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Cow genome map

           
Conread name:
           
Ss1.1-pigcb_1823.5
        

               
Conread position:
               
155-459
               

               
Cow position:
               
chr6:415850-416157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
176-501
               

               
Cow position:
               
chr6:24961925-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
291, 11
               

               
Conread position:
               
177-652
               

               
Cow position:
               
chr6:62324770-62325232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
180-329
               

               
Cow position:
               
chr6:89127-88978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
180-537
               

               
Cow position:
               
chr6:10459517-10459871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
219, 147
               

               
Conread position:
               
182-484
               

               
Cow position:
               
chr6:642794-642492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
149, 217
               

               
Conread position:
               
182-533
               

               
Cow position:
               
chr6:23248180-23247841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
162, 143
               

               
Conread position:
               
182-653
               

               
Cow position:
               
chr6:55282506-55282052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 30
               

               
Conread position:
               
183-561
               

               
Cow position:
               
chr6:53519839-53519471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
212, 108
               

               
Conread position:
               
183-684
               

               
Cow position:
               
chr6:37199762-37199260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 307
               

               
Conread position:
               
184-460
               

               
Cow position:
               
chr6:6614218-6614489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
88, 141
               

               
Conread position:
               
189-656
               

               
Cow position:
               
chr6:6400737-6401208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 123
               

               
Conread position:
               
191-671
               

               
Cow position:
               
chr6:32867414-32866963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
291, 86
               

               
Conread position:
               
191-680
               

               
Cow position:
               
chr6:31535778-31535308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
222, 23
               

               
Conread position:
               
192-341
               

               
Cow position:
               
chr6:64436537-64436390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
192-422
               

               
Cow position:
               
chr6:61575397-61575625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
192-545
               

               
Cow position:
               
chr6:47383794-47384143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 135
               

               
Conread position:
               
192-579
               

               
Cow position:
               
chr6:54867304-54867688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 46
               

               
Conread position:
               
192-678
               

               
Cow position:
               
chr6:48281788-48282263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
192-683
               

               
Cow position:
               
chr6:8562509-8562983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 133
               

               
Conread position:
               
192-683
               

               
Cow position:
               
chr6:64431732-64432204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 81
               

               
Conread position:
               
192-684
               

               
Cow position:
               
chr6:65676050-65676521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
459, 99
               

               
Conread position:
               
192-684
               

               
Cow position:
               
chr6:65711620-65712096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
427, 99
               

               
Conread position:
               
192-684
               

               
Cow position:
               
chr6:67214535-67215040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 20
               

               
Conread position:
               
193-373
               

               
Cow position:
               
chr6:16220231-16220056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
193-571
               

               
Cow position:
               
chr6:36652216-36652585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
219, 16
               

               
Conread position:
               
193-652
               

               
Cow position:
               
chr6:10400101-10399669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 90
               

               
Conread position:
               
194-338
               

               
Cow position:
               
chr6:22986195-22986055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
194-460
               

               
Cow position:
               
chr6:52025860-52025598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
194-475
               

               
Cow position:
               
chr6:34075815-34076096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
135, 18
               

               
Conread position:
               
194-521
               

               
Cow position:
               
chr6:456982-457288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
194-545
               

               
Cow position:
               
chr6:52408867-52408520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
194-552
               

               
Cow position:
               
chr6:1886868-1886523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
194-560
               

               
Cow position:
               
chr6:19681729-19681373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 56
               

               
Conread position:
               
194-560
               

               
Cow position:
               
chr6:55475041-55475407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
194-611
               

               
Cow position:
               
chr6:40713708-40713311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
194-629
               

               
Cow position:
               
chr6:35842452-35842876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
194-652
               

               
Cow position:
               
chr6:143601-143139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
194-652
               

               
Cow position:
               
chr6:55610444-55609989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
104, 91
               

               
Conread position:
               
194-663
               

               
Cow position:
               
chr6:323515-323052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 138
               

               
Conread position:
               
194-668
               

               
Cow position:
               
chr6:15938057-15937599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 41
               

               
Conread position:
               
194-674
               

               
Cow position:
               
chr6:6201236-6201697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
229, 85
               

               
Conread position:
               
195-338
               

               
Cow position:
               
chr6:20329817-20329959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
195-374
               

               
Cow position:
               
chr6:9375578-9375398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
195-419
               

               
Cow position:
               
chr6:66453597-66453812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
195-435
               

               
Cow position:
               
chr6:14839230-14838998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
195-561
               

               
Cow position:
               
chr6:9452973-9452616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
195-581
               

               
Cow position:
               
chr6:35103531-35103157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
224, 17
               

               
Conread position:
               
195-643
               

               
Cow position:
               
chr6:58732517-58732070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
195-654
               

               
Cow position:
               
chr6:28148046-28148505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
196-447
               

               
Cow position:
               
chr6:18968973-18968741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
196-541
               

               
Cow position:
               
chr6:28318206-28318529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
269, 98
               

               
Conread position:
               
197-307
               

               
Cow position:
               
chr6:65016092-65015982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-320
               

               
Cow position:
               
chr6:32024540-32024420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
197-333
               

               
Cow position:
               
chr6:58439766-58439901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 110
               

               
Conread position:
               
197-334
               

               
Cow position:
               
chr6:7253628-7253491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-336
               

               
Cow position:
               
chr6:45617642-45617503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
197-342
               

               
Cow position:
               
chr6:5329949-5330087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
197-342
               

               
Cow position:
               
chr6:51463818-51463676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
197-350
               

               
Cow position:
               
chr6:65862484-65862636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 144
               

               
Conread position:
               
197-351
               

               
Cow position:
               
chr6:17068021-17067873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-352
               

               
Cow position:
               
chr6:51398599-51398748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
197-364
               

               
Cow position:
               
chr6:7694555-7694390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-368
               

               
Cow position:
               
chr6:59302027-59301858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
197-369
               

               
Cow position:
               
chr6:28559213-28559387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
197-373
               

               
Cow position:
               
chr6:12623269-12623437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
197-377
               

               
Cow position:
               
chr6:40264399-40264229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
197-380
               

               
Cow position:
               
chr6:46666902-46667086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
131, 49
               

               
Conread position:
               
197-383
               

               
Cow position:
               
chr6:20605732-20605913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
197-399
               

               
Cow position:
               
chr6:32210828-32210635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-400
               

               
Cow position:
               
chr6:19427247-19427448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 66
               

               
Conread position:
               
197-411
               

               
Cow position:
               
chr6:24327337-24327136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
178, 22
               

               
Conread position:
               
197-412
               

               
Cow position:
               
chr6:388969-389180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
173, 42
               

               
Conread position:
               
197-413
               

               
Cow position:
               
chr6:2012817-2013026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
147, 94
               

               
Conread position:
               
197-414
               

               
Cow position:
               
chr6:39994663-39994454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
197-417
               

               
Cow position:
               
chr6:32916122-32915912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
212, 79
               

               
Conread position:
               
197-425
               

               
Cow position:
               
chr6:1907337-1907557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 132
               

               
Conread position:
               
197-438
               

               
Cow position:
               
chr6:61130684-61130447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr6:10254039-10254280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
200, 15
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr6:58076023-58076269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
197-451
               

               
Cow position:
               
chr6:49002926-49002689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
197-452
               

               
Cow position:
               
chr6:24515395-24515154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
197-456
               

               
Cow position:
               
chr6:48344126-48344381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
238, 131
               

               
Conread position:
               
197-458
               

               
Cow position:
               
chr6:45160493-45160248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr6:6460340-6460594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr6:13741494-13741753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr6:16737819-16738071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr6:54885115-54884853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
204, 82
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr6:67304600-67304857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-464
               

               
Cow position:
               
chr6:47540324-47540587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
76, 131
               

               
Conread position:
               
197-464
               

               
Cow position:
               
chr6:53710916-53711171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
197-464
               

               
Cow position:
               
chr6:54807021-54807283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
197-465
               

               
Cow position:
               
chr6:25773583-25773328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
197-466
               

               
Cow position:
               
chr6:12629823-12630079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
197-469
               

               
Cow position:
               
chr6:16410994-16411252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-469
               

               
Cow position:
               
chr6:50119989-50119721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 85
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr6:9322957-9323212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr6:61137163-61137438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chr6:5673027-5673313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
121, 230
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chr6:48425523-48425258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 76
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr6:24652385-24652127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr6:36928450-36928728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chr6:47988988-47989239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
197-487
               

               
Cow position:
               
chr6:21542118-21542402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
226, 94
               

               
Conread position:
               
197-492
               

               
Cow position:
               
chr6:14850917-14850630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
197-500
               

               
Cow position:
               
chr6:8804729-8804439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-500
               

               
Cow position:
               
chr6:52248335-52248040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
178, 13
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chr6:48169743-48170034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 67
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chr6:15782727-15782410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chr6:58073843-58074152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
218, 69
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chr6:130366-130050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
232, 15
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chr6:38614622-38614925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
215, 84
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chr6:56842958-56843267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
241, 16
               

               
Conread position:
               
197-522
               

               
Cow position:
               
chr6:54140612-54140911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
274, 15
               

               
Conread position:
               
197-530
               

               
Cow position:
               
chr6:7989615-7989293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
272, 27
               

               
Conread position:
               
197-531
               

               
Cow position:
               
chr6:28811196-28810875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
229, 64
               

               
Conread position:
               
197-532
               

               
Cow position:
               
chr6:58748008-58748342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
211, 106
               

               
Conread position:
               
197-544
               

               
Cow position:
               
chr6:7312389-7312729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
307, 130
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr6:55040419-55040077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
10, 132
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chr6:63272815-63272475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
197-551
               

               
Cow position:
               
chr6:20098166-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
226, 72
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr6:12551066-12551413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
212, 15
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr6:31525847-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
250, 15
               

               
Conread position:
               
197-553
               

               
Cow position:
               
chr6:37634587-37634940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
217, 92
               

               
Conread position:
               
197-557
               

               
Cow position:
               
chr6:12337783-12338148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
154, 15
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chr6:14696574-14696215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
265, 104
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chr6:57164228-57164575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr6:9008813-9008460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr6:35435801-35436146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr6:63197373-63197011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
156, 69
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr6:66874160-66874501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
197-561
               

               
Cow position:
               
chr6:6343224-6343583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
145, 77
               

               
Conread position:
               
197-561
               

               
Cow position:
               
chr6:14958551-14958187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
214, 128
               

               
Conread position:
               
197-561
               

               
Cow position:
               
chr6:21110767-21111105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
197-561
               

               
Cow position:
               
chr6:38218470-38218820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 80
               

               
Conread position:
               
197-564
               

               
Cow position:
               
chr6:63047374-63047748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
197-566
               

               
Cow position:
               
chr6:8637073-8637440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
197-566
               

               
Cow position:
               
chr6:42961569-42961205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
193, 175
               

               
Conread position:
               
197-566
               

               
Cow position:
               
chr6:60442217-60442565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
197-568
               

               
Cow position:
               
chr6:11829964-11830347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
108, 300
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr6:53651838-53652203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
197-574
               

               
Cow position:
               
chr6:528478-528117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
361, 16
               

               
Conread position:
               
197-577
               

               
Cow position:
               
chr6:68049234-68049587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
370, 15
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr6:36196012-36196378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
353, 80
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr6:36470764-36470391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr6:54864868-54864489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
215, 15
               

               
Conread position:
               
197-585
               

               
Cow position:
               
chr6:12500658-12501023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
309, 104
               

               
Conread position:
               
197-586
               

               
Cow position:
               
chr6:21869847-21869471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
212, 92
               

               
Conread position:
               
197-622
               

               
Cow position:
               
chr6:27851906-27851499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
272, 17
               

               
Conread position:
               
197-627
               

               
Cow position:
               
chr6:67187489-67187895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 59
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr6:28482813-28483233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 130
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr6:35990424-35990023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
290, 20
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr6:38641296-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 83
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chr6:54647724-54647283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
212, 56
               

               
Conread position:
               
197-638
               

               
Cow position:
               
chr6:51835198-51835623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
197-640
               

               
Cow position:
               
chr6:15305384-15305798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
197-640
               

               
Cow position:
               
chr6:54132616-54133038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
204, 67
               

               
Conread position:
               
197-641
               

               
Cow position:
               
chr6:38207697-38207258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
197-641
               

               
Cow position:
               
chr6:63286712-63286271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
371, 146
               

               
Conread position:
               
197-644
               

               
Cow position:
               
chr6:41375549-41376001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 217
               

               
Conread position:
               
197-646
               

               
Cow position:
               
chr6:39358542-39358110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
197-647
               

               
Cow position:
               
chr6:5302606-5302168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 62
               

               
Conread position:
               
197-647
               

               
Cow position:
               
chr6:49398818-49398395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr6:17997517-17997082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 80
               

               
Conread position:
               
197-649
               

               
Cow position:
               
chr6:61113548-61114001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 272
               

               
Conread position:
               
197-650
               

               
Cow position:
               
chr6:13688013-13687580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
147, 82
               

               
Conread position:
               
197-651
               

               
Cow position:
               
chr6:54490942-54490508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:1770397-1769955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
366, 45
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:6098484-6098010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
160, 92
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:8965888-8966327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 17
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:15242632-15243078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 51
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:16765594-16765159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:18988015-18988430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
185, 15
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:24902343-24901916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:31260785-31261241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
147, 185
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:35471728-35471274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
41, 131
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:38440980-38441419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
379, 80
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:51581460-51581016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:54980900-54981369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 132
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:60859508-60859059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 204
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:61631821-61631369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 136
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:65870822-65871270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
224, 131
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:66363446-66362993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 71
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chr6:66433746-66434193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 85
               

               
Conread position:
               
197-653
               

               
Cow position:
               
chr6:611359-611783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chr6:16746138-16746590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 62
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chr6:53460773-53460328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
209, 16
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chr6:54430617-54431080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 241
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chr6:4383291-4383721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chr6:56349969-56350421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
307, 142
               

               
Conread position:
               
197-661
               

               
Cow position:
               
chr6:10106198-10105736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 129
               

               
Conread position:
               
197-663
               

               
Cow position:
               
chr6:38853860-38853406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 128
               

               
Conread position:
               
197-664
               

               
Cow position:
               
chr6:50090438-50090896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
197-665
               

               
Cow position:
               
chr6:29210299-29210729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
197-665
               

               
Cow position:
               
chr6:44194747-44194305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr6:16103404-16102936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
129, 67
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr6:23695796-23696247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr6:24468594-24468146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chr6:32121709-32122150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
453, 76
               

               
Conread position:
               
197-667
               

               
Cow position:
               
chr6:66131106-66131573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 64
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr6:13040250-13040709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
9, 129
               

               
Conread position:
               
197-669
               

               
Cow position:
               
chr6:56849816-56850273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
216, 56
               

               
Conread position:
               
197-672
               

               
Cow position:
               
chr6:52478629-52478150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 372
               

               
Conread position:
               
197-673
               

               
Cow position:
               
chr6:18080716-18080259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 133
               

               
Conread position:
               
197-674
               

               
Cow position:
               
chr6:35181455-35180991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 72
               

               
Conread position:
               
197-674
               

               
Cow position:
               
chr6:38771094-38771536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
447, 15
               

               
Conread position:
               
197-677
               

               
Cow position:
               
chr6:6264442-6264911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
197-678
               

               
Cow position:
               
chr6:5095752-5095277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 82
               

               
Conread position:
               
197-678
               

               
Cow position:
               
chr6:17414655-17414186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
197-678
               

               
Cow position:
               
chr6:24781765-24781290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chr6:10176503-10176035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chr6:53178438-53178897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
454, 12
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr6:445109-445592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 208
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr6:7539371-7539845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chr6:40031992-40032453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 16
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr6:7103439-7102964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 204
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr6:14949683-14949221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 94
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr6:21587623-21587164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
446, 131
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chr6:46557854-46558324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 76
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr6:2607411-2607877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 89
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr6:6063481-6063023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr6:14201496-14201969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
221, 155
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr6:17557173-17557646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr6:22332600-22332126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
20, 133
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chr6:50746779-50747269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 44
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr6:2896549-2897012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr6:3952323-3952791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
469, 12
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr6:20157123-20157606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr6:35539701-35539224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
251, 35
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chr6:57384318-57384801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
211, 101
               

               
Conread position:
               
198-327
               

               
Cow position:
               
chr6:59597456-59597586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
198-368
               

               
Cow position:
               
chr6:46245524-46245355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
198-391
               

               
Cow position:
               
chr6:1783973-1783792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
198-447
               

               
Cow position:
               
chr6:20231026-20230787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
198-459
               

               
Cow position:
               
chr6:21311959-21311707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 164
               

               
Conread position:
               
198-472
               

               
Cow position:
               
chr6:50445960-50445702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
198-476
               

               
Cow position:
               
chr6:49685384-49685650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
198-512
               

               
Cow position:
               
chr6:55842361-55842059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
198-523
               

               
Cow position:
               
chr6:10695668-10695975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
198-553
               

               
Cow position:
               
chr6:21231335-21231670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
344, 83
               

               
Conread position:
               
198-553
               

               
Cow position:
               
chr6:60350500-60350147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 127
               

               
Conread position:
               
198-566
               

               
Cow position:
               
chr6:11169507-11169861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
198-572
               

               
Cow position:
               
chr6:59069829-59069456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 130
               

               
Conread position:
               
198-652
               

               
Cow position:
               
chr6:4468546-4469005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 112
               

               
Conread position:
               
198-652
               

               
Cow position:
               
chr6:48567543-48567121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
198-674
               

               
Cow position:
               
chr6:33302209-33302655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
198-676
               

               
Cow position:
               
chr6:36202627-36203085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
214, 70
               

               
Conread position:
               
198-684
               

               
Cow position:
               
chr6:10332297-10331827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
198-684
               

               
Cow position:
               
chr6:49442889-49443370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
121, 78
               

               
Conread position:
               
199-326
               

               
Cow position:
               
chr6:16492120-16491995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
199-350
               

               
Cow position:
               
chr6:44377066-44377216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
199-377
               

               
Cow position:
               
chr6:61978381-61978203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
133, 120
               

               
Conread position:
               
199-438
               

               
Cow position:
               
chr6:30826234-30826001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
199-460
               

               
Cow position:
               
chr6:62479365-62479108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
199-469
               

               
Cow position:
               
chr6:47150579-47150853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
199-475
               

               
Cow position:
               
chr6:9026317-9026591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
203, 81
               

               
Conread position:
               
199-523
               

               
Cow position:
               
chr6:7173964-7173635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 134
               

               
Conread position:
               
199-579
               

               
Cow position:
               
chr6:47339549-47339185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
10, 81
               

               
Conread position:
               
199-579
               

               
Cow position:
               
chr6:51674718-51675079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
366, 80
               

               
Conread position:
               
199-580
               

               
Cow position:
               
chr6:18049225-18048852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
144, 13
               

               
Conread position:
               
199-640
               

               
Cow position:
               
chr6:41733427-41733862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chr6:43345660-43345201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 214
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chr6:44078322-44078754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 13
               

               
Conread position:
               
199-656
               

               
Cow position:
               
chr6:59620469-59620900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
452, 92
               

               
Conread position:
               
199-657
               

               
Cow position:
               
chr6:46465628-46466060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
145, 90
               

               
Conread position:
               
199-662
               

               
Cow position:
               
chr6:19695607-19696055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 14
               

               
Conread position:
               
199-665
               

               
Cow position:
               
chr6:21004455-21004932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 183
               

               
Conread position:
               
199-666
               

               
Cow position:
               
chr6:15301017-15300587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
199-666
               

               
Cow position:
               
chr6:26728726-26728291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
199-671
               

               
Cow position:
               
chr6:52431232-52430760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 128
               

               
Conread position:
               
199-676
               

               
Cow position:
               
chr6:67456503-67457003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 183
               

               
Conread position:
               
199-677
               

               
Cow position:
               
chr6:67430089-67429602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
200, 127
               

               
Conread position:
               
199-679
               

               
Cow position:
               
chr6:54365522-54365062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 20
               

               
Conread position:
               
200-400
               

               
Cow position:
               
chr6:33276840-33277037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
144, 53
               

               
Conread position:
               
200-454
               

               
Cow position:
               
chr6:46400604-46400367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
200-501
               

               
Cow position:
               
chr6:57405323-57405032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
200-558
               

               
Cow position:
               
chr6:8788236-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
200-560
               

               
Cow position:
               
chr6:16706808-16707164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
200-560
               

               
Cow position:
               
chr6:31564534-31564186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
200-564
               

               
Cow position:
               
chr6:42565487-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
200-572
               

               
Cow position:
               
chr6:63299222-63298868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
202, 20
               

               
Conread position:
               
200-622
               

               
Cow position:
               
chr6:26915131-26915537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
200-629
               

               
Cow position:
               
chr6:7190318-7189913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
200-629
               

               
Cow position:
               
chr6:21737081-21736686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
173, 52
               

               
Conread position:
               
200-650
               

               
Cow position:
               
chr6:67950760-67951194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 83
               

               
Conread position:
               
200-652
               

               
Cow position:
               
chr6:32125868-32126291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
200-652
               

               
Cow position:
               
chr6:46860367-46859932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
226, 125
               

               
Conread position:
               
200-659
               

               
Cow position:
               
chr6:5609639-5609196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
200-659
               

               
Cow position:
               
chr6:23532464-23532892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
214, 73
               

               
Conread position:
               
200-659
               

               
Cow position:
               
chr6:65702600-65702162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
200-666
               

               
Cow position:
               
chr6:55546359-55545921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
217, 27
               

               
Conread position:
               
200-676
               

               
Cow position:
               
chr6:19401663-19402107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
279, 76
               

               
Conread position:
               
200-678
               

               
Cow position:
               
chr6:13367096-13367549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
228, 55
               

               
Conread position:
               
200-680
               

               
Cow position:
               
chr6:12927921-12928408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
201, 91
               

               
Conread position:
               
201-330
               

               
Cow position:
               
chr6:3719204-3719075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
201-412
               

               
Cow position:
               
chr6:54293913-54294114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
201-479
               

               
Cow position:
               
chr6:18961720-18961444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
201-521
               

               
Cow position:
               
chr6:22503120-22502798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
201-532
               

               
Cow position:
               
chr6:54974971-54974647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
321, 95
               

               
Conread position:
               
201-622
               

               
Cow position:
               
chr6:6060755-6060362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
201-638
               

               
Cow position:
               
chr6:12092182-12091761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
350, 70
               

               
Conread position:
               
201-648
               

               
Cow position:
               
chr6:24031177-24031598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
207, 124
               

               
Conread position:
               
201-652
               

               
Cow position:
               
chr6:48187779-48187335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
177, 73
               

               
Conread position:
               
201-652
               

               
Cow position:
               
chr6:53139127-53138699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 202
               

               
Conread position:
               
201-671
               

               
Cow position:
               
chr6:2547045-2547521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
201-683
               

               
Cow position:
               
chr6:7994668-7994187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
321, 88
               

               
Conread position:
               
202-399
               

               
Cow position:
               
chr6:10605489-10605681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
202-652
               

               
Cow position:
               
chr6:66087759-66088182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
224, 18
               

               
Conread position:
               
202-683
               

               
Cow position:
               
chr6:60473938-60474407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 91
               

               
Conread position:
               
203-378
               

               
Cow position:
               
chr6:33918047-33917879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
203-379
               

               
Cow position:
               
chr6:59015757-59015585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
118, 79
               

               
Conread position:
               
203-446
               

               
Cow position:
               
chr6:64449198-64449428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
203-466
               

               
Cow position:
               
chr6:53731325-53731582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
203-507
               

               
Cow position:
               
chr6:62925189-62924897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
141, 74
               

               
Conread position:
               
203-553
               

               
Cow position:
               
chr6:16423503-16423846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
138, 98
               

               
Conread position:
               
203-570
               

               
Cow position:
               
chr6:25407588-25407230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 79
               

               
Conread position:
               
203-577
               

               
Cow position:
               
chr6:16191471-16191840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 17
               

               
Conread position:
               
203-638
               

               
Cow position:
               
chr6:47305143-47305567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 78
               

               
Conread position:
               
203-648
               

               
Cow position:
               
chr6:32269066-32268652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
203-671
               

               
Cow position:
               
chr6:46865788-46865327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
203-679
               

               
Cow position:
               
chr6:16700063-16700521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
203-681
               

               
Cow position:
               
chr6:29239748-29240199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
203-683
               

               
Cow position:
               
chr6:240131-239647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
203-683
               

               
Cow position:
               
chr6:42518779-42519257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
204, 66
               

               
Conread position:
               
204-475
               

               
Cow position:
               
chr6:7824566-7824833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
204-500
               

               
Cow position:
               
chr6:44098889-44099178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
198, 73
               

               
Conread position:
               
204-635
               

               
Cow position:
               
chr6:63720004-63720414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
202, 57
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chr6:61515393-61514963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 77
               

               
Conread position:
               
204-652
               

               
Cow position:
               
chr6:18447704-18447276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 77
               

               
Conread position:
               
204-657
               

               
Cow position:
               
chr6:37467734-37467293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 73
               

               
Conread position:
               
204-668
               

               
Cow position:
               
chr6:21456885-21456423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
149, 97
               

               
Conread position:
               
205-512
               

               
Cow position:
               
chr6:17090401-17090703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
145, 120
               

               
Conread position:
               
205-675
               

               
Cow position:
               
chr6:47519852-47520315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
219, 120
               

               
Conread position:
               
206-477
               

               
Cow position:
               
chr6:60239585-60239326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
206-492
               

               
Cow position:
               
chr6:607069-607347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
257, 121
               

               
Conread position:
               
206-552
               

               
Cow position:
               
chr6:4864733-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
271, 65
               

               
Conread position:
               
206-646
               

               
Cow position:
               
chr6:21062076-21061658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
206-648
               

               
Cow position:
               
chr6:65903810-65903391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
206-681
               

               
Cow position:
               
chr6:9736835-9736377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
208-586
               

               
Cow position:
               
chr6:47799106-47799471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 55
               

               
Conread position:
               
209-652
               

               
Cow position:
               
chr6:47355634-47356065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
211, 83
               

               
Conread position:
               
209-672
               

               
Cow position:
               
chr6:63252113-63251665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
212-554
               

               
Cow position:
               
chr6:51893692-51893354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
157, 131
               

               
Conread position:
               
212-629
               

               
Cow position:
               
chr6:52412667-52413078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
212-652
               

               
Cow position:
               
chr6:50577333-50577754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
262, 113
               

               
Conread position:
               
213-460
               

               
Cow position:
               
chr6:5958207-5957976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
213-652
               

               
Cow position:
               
chr6:37246616-37246200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 164
               

               
Conread position:
               
213-659
               

               
Cow position:
               
chr6:6226838-6227254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
287, 40
               

               
Conread position:
               
214-458
               

               
Cow position:
               
chr6:8187704-8187470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
133, 96
               

               
Conread position:
               
214-560
               

               
Cow position:
               
chr6:24004363-24004688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
214-673
               

               
Cow position:
               
chr6:34475735-34475299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 29
               

               
Conread position:
               
214-682
               

               
Cow position:
               
chr6:53933034-53932581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 79
               

               
Conread position:
               
215-465
               

               
Cow position:
               
chr6:66304030-66303783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 12
               

               
Conread position:
               
215-519
               

               
Cow position:
               
chr6:25008530-25008830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
199, 59
               

               
Conread position:
               
215-552
               

               
Cow position:
               
chr6:1499454-1499784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
169, 85
               

               
Conread position:
               
215-579
               

               
Cow position:
               
chr6:37149009-37149358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
215-675
               

               
Cow position:
               
chr6:1703630-1704058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
435, 113
               

               
Conread position:
               
216-503
               

               
Cow position:
               
chr6:67968797-67968515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
203, 109
               

               
Conread position:
               
216-677
               

               
Cow position:
               
chr6:60057839-60057373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 65
               

               
Conread position:
               
217-550
               

               
Cow position:
               
chr6:26910051-26909731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
217-639
               

               
Cow position:
               
chr6:5114228-5113821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
348, 8
               

               
Conread position:
               
217-666
               

               
Cow position:
               
chr6:47574723-47575145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
142, 64
               

               
Conread position:
               
220-678
               

               
Cow position:
               
chr6:3978846-3978372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
221-534
               

               
Cow position:
               
chr6:54936399-54936705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
223-670
               

               
Cow position:
               
chr6:27888174-27888602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
197, 15
               

               
Conread position:
               
224-475
               

               
Cow position:
               
chr6:9838987-9839239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
224-523
               

               
Cow position:
               
chr6:30973866-30974157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
224-656
               

               
Cow position:
               
chr6:8125157-8125571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 55
               

               
Conread position:
               
224-675
               

               
Cow position:
               
chr6:44566237-44566687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
184, 119
               

               
Conread position:
               
224-683
               

               
Cow position:
               
chr6:59104433-59104874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
274, 51
               

               
Conread position:
               
227-613
               

               
Cow position:
               
chr6:17334229-17333850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 65
               

               
Conread position:
               
227-652
               

               
Cow position:
               
chr6:65264707-65264312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
227-659
               

               
Cow position:
               
chr6:12668935-12669344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
227-663
               

               
Cow position:
               
chr6:60819343-60819767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
420, 66
               

               
Conread position:
               
229-574
               

               
Cow position:
               
chr6:54991172-54990833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
204, 53
               

               
Conread position:
               
229-666
               

               
Cow position:
               
chr6:15447378-15446942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 100
               

               
Conread position:
               
230-579
               

               
Cow position:
               
chr6:35993408-35993752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 151
               

               
Conread position:
               
230-682
               

               
Cow position:
               
chr6:11246595-11247039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 34
               

               
Conread position:
               
232-479
               

               
Cow position:
               
chr6:19012902-19013142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
147, 65
               

               
Conread position:
               
232-553
               

               
Cow position:
               
chr6:47640604-47640288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
232-579
               

               
Cow position:
               
chr6:16764809-16764475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
230, 51
               

               
Conread position:
               
232-616
               

               
Cow position:
               
chr6:31854185-31854557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
264, 120
               

               
Conread position:
               
234-470
               

               
Cow position:
               
chr6:40834638-40834406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
234-666
               

               
Cow position:
               
chr6:60850555-60850126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 93
               

               
Conread position:
               
235-492
               

               
Cow position:
               
chr6:44984162-44984417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
235, 51
               

               
Conread position:
               
235-684
               

               
Cow position:
               
chr6:60783706-60784137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 47
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr6:59108779-59109041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
236-560
               

               
Cow position:
               
chr6:26450154-26450465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
305, 92
               

               
Conread position:
               
236-669
               

               
Cow position:
               
chr6:15243088-15243518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
237-460
               

               
Cow position:
               
chr6:54492621-54492404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
237-523
               

               
Cow position:
               
chr6:12543095-12542815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
186, 40
               

               
Conread position:
               
237-648
               

               
Cow position:
               
chr6:24934792-24934377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 77
               

               
Conread position:
               
237-651
               

               
Cow position:
               
chr6:47699985-47700403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
170, 44
               

               
Conread position:
               
238-399
               

               
Cow position:
               
chr6:50020369-50020530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
238-465
               

               
Cow position:
               
chr6:633522-633300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
238-475
               

               
Cow position:
               
chr6:5445462-5445690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
184, 40
               

               
Conread position:
               
239-534
               

               
Cow position:
               
chr6:55763694-55763979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
239-652
               

               
Cow position:
               
chr6:57546376-57545990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
239-667
               

               
Cow position:
               
chr6:31847380-31846989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
410, 53
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr6:78071-77809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
240-649
               

               
Cow position:
               
chr6:3595634-3596030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
6, 34
               

               
Conread position:
               
240-649
               

               
Cow position:
               
chr6:54036294-54035904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
240-664
               

               
Cow position:
               
chr6:34251446-34251046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
248, 41
               

               
Conread position:
               
241-560
               

               
Cow position:
               
chr6:58590116-58590425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
188, 87
               

               
Conread position:
               
241-648
               

               
Cow position:
               
chr6:19264658-19264266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
243-642
               

               
Cow position:
               
chr6:60739859-60740239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
243-666
               

               
Cow position:
               
chr6:50984068-50984472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
243-671
               

               
Cow position:
               
chr6:3464128-3464550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
244-573
               

               
Cow position:
               
chr6:67323161-67323474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
246-521
               

               
Cow position:
               
chr6:61608354-61608625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
177, 79
               

               
Conread position:
               
247-652
               

               
Cow position:
               
chr6:63094081-63093675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
247-655
               

               
Cow position:
               
chr6:4692136-4691722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 80
               

               
Conread position:
               
251-672
               

               
Cow position:
               
chr6:17313582-17313996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 86
               

               
Conread position:
               
254-664
               

               
Cow position:
               
chr6:19996475-19996866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
262-627
               

               
Cow position:
               
chr6:47833255-47832898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
262-652
               

               
Cow position:
               
chr6:21399894-21399515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
264-585
               

               
Cow position:
               
chr6:21234905-21235220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
138, 64
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr6:358028-357847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
154, 63
               

               
Conread position:
               
265-566
               

               
Cow position:
               
chr6:57571339-57571637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
265-646
               

               
Cow position:
               
chr6:48010659-48010291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
119, 78
               

               
Conread position:
               
265-666
               

               
Cow position:
               
chr6:60118012-60118392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
265-670
               

               
Cow position:
               
chr6:67574273-67574647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
106, 46
               

               
Conread position:
               
265-671
               

               
Cow position:
               
chr6:45388192-45388576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
265-683
               

               
Cow position:
               
chr6:19755211-19754810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 48
               

               
Conread position:
               
266-573
               

               
Cow position:
               
chr6:16316173-16316481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
266-666
               

               
Cow position:
               
chr6:38640094-38640485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
142, 62
               

               
Conread position:
               
266-679
               

               
Cow position:
               
chr6:9219136-9219530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 62
               

               
Conread position:
               
266-684
               

               
Cow position:
               
chr6:27605476-27605066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
275, 37
               

               
Conread position:
               
266-684
               

               
Cow position:
               
chr6:27658091-27658517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
39, 44
               

               
Conread position:
               
268-678
               

               
Cow position:
               
chr6:19446124-19446520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 60
               

               
Conread position:
               
268-682
               

               
Cow position:
               
chr6:1371362-1370955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
269-684
               

               
Cow position:
               
chr6:4559438-4559029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
271-577
               

               
Cow position:
               
chr6:582404-582104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
271-652
               

               
Cow position:
               
chr6:48988305-48988673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 130
               

               
Conread position:
               
271-656
               

               
Cow position:
               
chr6:53841631-53841260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
272-586
               

               
Cow position:
               
chr6:3081261-3080936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
129, 103
               

               
Conread position:
               
272-664
               

               
Cow position:
               
chr6:58370612-58370999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 139
               

               
Conread position:
               
272-676
               

               
Cow position:
               
chr6:14914375-14913969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
272-676
               

               
Cow position:
               
chr6:30123323-30122906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
121, 56
               

               
Conread position:
               
272-679
               

               
Cow position:
               
chr6:38609837-38610245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 68
               

               
Conread position:
               
273-559
               

               
Cow position:
               
chr6:60667291-60667561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
274-654
               

               
Cow position:
               
chr6:62669745-62670112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 19
               

               
Conread position:
               
275-679
               

               
Cow position:
               
chr6:62929368-62929759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
69, 73
               

               
Conread position:
               
276-665
               

               
Cow position:
               
chr6:50467008-50467391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
159, 52
               

               
Conread position:
               
277-475
               

               
Cow position:
               
chr6:38233834-38234026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
277-542
               

               
Cow position:
               
chr6:20206150-20206409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
277-675
               

               
Cow position:
               
chr6:16266597-16266988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
277-681
               

               
Cow position:
               
chr6:23402115-23401727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
280-616
               

               
Cow position:
               
chr6:36189574-36189903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
281-665
               

               
Cow position:
               
chr6:43135066-43134688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
281-673
               

               
Cow position:
               
chr6:35725973-35726350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
281-679
               

               
Cow position:
               
chr6:10225761-10225387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
284, 47
               

               
Conread position:
               
283-653
               

               
Cow position:
               
chr6:32287518-32287871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
162, 45
               

               
Conread position:
               
285-578
               

               
Cow position:
               
chr6:21590575-21590878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
287-616
               

               
Cow position:
               
chr6:21514735-21514403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
293-573
               

               
Cow position:
               
chr6:3592291-3592562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
126, 35
               

               
Conread position:
               
294-670
               

               
Cow position:
               
chr6:22850354-22849995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
269, 34
               

               
Conread position:
               
294-677
               

               
Cow position:
               
chr6:10039612-10039992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
294-679
               

               
Cow position:
               
chr6:54208248-54207871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
295-678
               

               
Cow position:
               
chr6:55209448-55209821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 104
               

               
Conread position:
               
298-579
               

               
Cow position:
               
chr6:66531926-66531651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
267, 30
               

               
Conread position:
               
298-665
               

               
Cow position:
               
chr6:62371286-62370935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
301-656
               

               
Cow position:
               
chr6:1429537-1429877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
301-682
               

               
Cow position:
               
chr6:17704717-17705103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
97, 287
               

               
Conread position:
               
305-629
               

               
Cow position:
               
chr6:9719021-9718701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
305-640
               

               
Cow position:
               
chr6:16261685-16262008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
305-657
               

               
Cow position:
               
chr6:27240104-27239761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
307-655
               

               
Cow position:
               
chr6:46173354-46173016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
307-679
               

               
Cow position:
               
chr6:51526395-51526756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
307-684
               

               
Cow position:
               
chr6:19292702-19293070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
308-650
               

               
Cow position:
               
chr6:44867636-44867309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
311-664
               

               
Cow position:
               
chr6:19045532-19045881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
269, 17
               

               
Conread position:
               
311-674
               

               
Cow position:
               
chr6:33509691-33510050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
312-579
               

               
Cow position:
               
chr6:55161374-55161641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
312-642
               

               
Cow position:
               
chr6:8161789-8161456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
315-570
               

               
Cow position:
               
chr6:58608533-58608282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chr6:24110196-24110548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 54
               

               
Conread position:
               
316-580
               

               
Cow position:
               
chr6:4389820-4390086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 12
               

               
Conread position:
               
322-578
               

               
Cow position:
               
chr6:67281813-67282064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
324-681
               

               
Cow position:
               
chr6:5330333-5330682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
325-648
               

               
Cow position:
               
chr6:22985939-22985627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 211
               

               
Conread position:
               
325-656
               

               
Cow position:
               
chr6:46274211-46273891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
327-652
               

               
Cow position:
               
chr6:60274087-60273772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
327-669
               

               
Cow position:
               
chr6:13565005-13565343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
86, 137
               

               
Conread position:
               
328-578
               

               
Cow position:
               
chr6:22525254-22525499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
328-669
               

               
Cow position:
               
chr6:8599927-8600259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
235, 75
               

               
Conread position:
               
329-614
               

               
Cow position:
               
chr6:2153668-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
329-645
               

               
Cow position:
               
chr6:60150788-60150471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
329-655
               

               
Cow position:
               
chr6:24339207-24339531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
330-630
               

               
Cow position:
               
chr6:55205388-55205090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
330-652
               

               
Cow position:
               
chr6:24536618-24536287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
330-675
               

               
Cow position:
               
chr6:37395483-37395141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
338-545
               

               
Cow position:
               
chr6:54600278-54600485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
338-662
               

               
Cow position:
               
chr6:581812-581491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
344-651
               

               
Cow position:
               
chr6:6195173-6194864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 182
               

               
Conread position:
               
346-680
               

               
Cow position:
               
chr6:60468177-60468497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 70
               

               
Conread position:
               
346-681
               

               
Cow position:
               
chr6:5845232-5844903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
347-671
               

               
Cow position:
               
chr6:55030256-55030593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
347-674
               

               
Cow position:
               
chr6:51530245-51529930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
347-682
               

               
Cow position:
               
chr6:23025172-23024827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 238
               

               
Conread position:
               
349-679
               

               
Cow position:
               
chr6:7627905-7628238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
356-678
               

               
Cow position:
               
chr6:47958766-47959070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
359-580
               

               
Cow position:
               
chr6:68652400-68652179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
200, 209
               

               
Conread position:
               
359-654
               

               
Cow position:
               
chr6:6724456-6724752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
359-664
               

               
Cow position:
               
chr6:60144246-60143948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
359-675
               

               
Cow position:
               
chr6:18608862-18608550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
359-683
               

               
Cow position:
               
chr6:53145730-53145410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
360-681
               

               
Cow position:
               
chr6:94236-93927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
290, 41
               

               
Conread position:
               
361-652
               

               
Cow position:
               
chr6:55417572-55417294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
361-664
               

               
Cow position:
               
chr6:28973080-28972781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
202, 66
               

               
Conread position:
               
361-666
               

               
Cow position:
               
chr6:56986691-56986394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
361-668
               

               
Cow position:
               
chr6:2078865-2078560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 204
               

               
Conread position:
               
362-666
               

               
Cow position:
               
chr6:62437370-62437670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
362-684
               

               
Cow position:
               
chr6:61884206-61883903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
363-579
               

               
Cow position:
               
chr6:55535792-55535581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
364-666
               

               
Cow position:
               
chr6:7801436-7801145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
57, 64
               

               
Conread position:
               
370-652
               

               
Cow position:
               
chr6:67728334-67728617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 214
               

               
Conread position:
               
370-683
               

               
Cow position:
               
chr6:51540972-51541278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
382-655
               

               
Cow position:
               
chr6:41015000-41014731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
270, 9
               

               
Conread position:
               
382-668
               

               
Cow position:
               
chr6:12964829-12965106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
166, 9
               

               
Conread position:
               
382-675
               

               
Cow position:
               
chr6:36809232-36808940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
383-652
               

               
Cow position:
               
chr6:59660971-59660698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 18
               

               
Conread position:
               
383-663
               

               
Cow position:
               
chr6:67451396-67451122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
383-668
               

               
Cow position:
               
chr6:56393749-56394026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
383-681
               

               
Cow position:
               
chr6:50504430-50504724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
385-680
               

               
Cow position:
               
chr6:50862920-50863210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
387-611
               

               
Cow position:
               
chr6:55502746-55502971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
170, 34
               

               
Conread position:
               
387-659
               

               
Cow position:
               
chr6:42567472-42567743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
387-668
               

               
Cow position:
               
chr6:57089177-57089456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
82, 180
               

               
Conread position:
               
389-681
               

               
Cow position:
               
chr6:32043829-32044123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
390-683
               

               
Cow position:
               
chr6:47778857-47779150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
393-629
               

               
Cow position:
               
chr6:12912024-12912256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
393-629
               

               
Cow position:
               
chr6:12914456-12914688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
393-668
               

               
Cow position:
               
chr6:32453373-32453648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
167, 10
               

               
Conread position:
               
393-680
               

               
Cow position:
               
chr6:62683353-62683638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
393-684
               

               
Cow position:
               
chr6:27219165-27219434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
394-656
               

               
Cow position:
               
chr6:47540861-47540597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
395-652
               

               
Cow position:
               
chr6:35319145-35318894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
395-654
               

               
Cow position:
               
chr6:37827968-37827706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
395-672
               

               
Cow position:
               
chr6:47790812-47790538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
397-652
               

               
Cow position:
               
chr6:52657936-52658194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 189
               

               
Conread position:
               
397-684
               

               
Cow position:
               
chr6:56799910-56799619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 172
               

               
Conread position:
               
398-638
               

               
Cow position:
               
chr6:61681065-61681303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
401-629
               

               
Cow position:
               
chr6:60121607-60121380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
162, 180
               

               
Conread position:
               
402-682
               

               
Cow position:
               
chr6:64380423-64380706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 175
               

               
Conread position:
               
403-578
               

               
Cow position:
               
chr6:1002267-1002093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
404-659
               

               
Cow position:
               
chr6:55297098-55296845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
246, 13
               

               
Conread position:
               
404-671
               

               
Cow position:
               
chr6:47642735-47642999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
404-677
               

               
Cow position:
               
chr6:47782855-47783137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 182
               

               
Conread position:
               
406-676
               

               
Cow position:
               
chr6:14063310-14063020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
407-670
               

               
Cow position:
               
chr6:48435834-48436089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
242, 24
               

               
Conread position:
               
408-681
               

               
Cow position:
               
chr6:54846278-54846010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
409-672
               

               
Cow position:
               
chr6:8688849-8688591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
409-680
               

               
Cow position:
               
chr6:26638381-26638653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
12, 175
               

               
Conread position:
               
409-682
               

               
Cow position:
               
chr6:4144642-4144913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
241, 135
               

               
Conread position:
               
410-648
               

               
Cow position:
               
chr6:43787907-43787673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
411-668
               

               
Cow position:
               
chr6:60850702-60850951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
413-652
               

               
Cow position:
               
chr6:51666333-51666096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
413-676
               

               
Cow position:
               
chr6:16380548-16380812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
413-679
               

               
Cow position:
               
chr6:68643993-68644259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 169
               

               
Conread position:
               
413-682
               

               
Cow position:
               
chr6:44961221-44960947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 138
               

               
Conread position:
               
414-668
               

               
Cow position:
               
chr6:21470422-21470178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
414-680
               

               
Cow position:
               
chr6:6227734-6227464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 157
               

               
Conread position:
               
416-629
               

               
Cow position:
               
chr6:23110192-23109975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 171
               

               
Conread position:
               
416-643
               

               
Cow position:
               
chr6:48379606-48379381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
416-681
               

               
Cow position:
               
chr6:46462374-46462111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
247, 62
               

               
Conread position:
               
417-560
               

               
Cow position:
               
chr6:20605969-20606111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
417-650
               

               
Cow position:
               
chr6:54127804-54127584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
417-667
               

               
Cow position:
               
chr6:51542901-51543156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
417-668
               

               
Cow position:
               
chr6:55404915-55405170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
46, 170
               

               
Conread position:
               
417-671
               

               
Cow position:
               
chr6:14166698-14166433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
417-680
               

               
Cow position:
               
chr6:54854249-54854516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
417-683
               

               
Cow position:
               
chr6:5486678-5486414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
233, 60
               

               
Conread position:
               
417-684
               

               
Cow position:
               
chr6:50269675-50269414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 59
               

               
Conread position:
               
418-619
               

               
Cow position:
               
chr6:69153423-69153618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
418-652
               

               
Cow position:
               
chr6:21535047-21535279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 151
               

               
Conread position:
               
418-665
               

               
Cow position:
               
chr6:50810662-50810421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 165
               

               
Conread position:
               
419-684
               

               
Cow position:
               
chr6:22205016-22204753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
134, 128
               

               
Conread position:
               
420-684
               

               
Cow position:
               
chr6:30502112-30501853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
210, 58
               

               
Conread position:
               
421-640
               

               
Cow position:
               
chr6:61556840-61557059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
421-666
               

               
Cow position:
               
chr6:6229714-6229940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
230, 59
               

               
Conread position:
               
421-666
               

               
Cow position:
               
chr6:48157387-48157138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 143
               

               
Conread position:
               
421-666
               

               
Cow position:
               
chr6:57079436-57079680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
232, 154
               

               
Conread position:
               
421-668
               

               
Cow position:
               
chr6:63426679-63426916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
421-672
               

               
Cow position:
               
chr6:1941819-1941575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
79, 62
               

               
Conread position:
               
421-672
               

               
Cow position:
               
chr6:42483428-42483673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
421-675
               

               
Cow position:
               
chr6:68376309-68376054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
421-684
               

               
Cow position:
               
chr6:18139480-18139222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
229, 85
               

               
Conread position:
               
422-555
               

               
Cow position:
               
chr6:314850-314980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
422-618
               

               
Cow position:
               
chr6:31865112-31865300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
422-638
               

               
Cow position:
               
chr6:65535157-65534943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
423-579
               

               
Cow position:
               
chr6:23610957-23611108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
423-649
               

               
Cow position:
               
chr6:55376163-55375938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
424-627
               

               
Cow position:
               
chr6:66947802-66947609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
424-648
               

               
Cow position:
               
chr6:20371309-20371540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
121, 153
               

               
Conread position:
               
424-652
               

               
Cow position:
               
chr6:54831492-54831717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
73, 64
               

               
Conread position:
               
425-649
               

               
Cow position:
               
chr6:68628874-68628643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
425-666
               

               
Cow position:
               
chr6:21184207-21183968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
425-670
               

               
Cow position:
               
chr6:45094583-45094836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
425-680
               

               
Cow position:
               
chr6:28851990-28852243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
425-684
               

               
Cow position:
               
chr6:21715065-21715319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
50, 42
               

               
Conread position:
               
427-655
               

               
Cow position:
               
chr6:50771340-50771119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
431-580
               

               
Cow position:
               
chr6:61128934-61128785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
431-650
               

               
Cow position:
               
chr6:33150269-33150057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
431-670
               

               
Cow position:
               
chr6:28089025-28088788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
220, 110
               

               
Conread position:
               
433-663
               

               
Cow position:
               
chr6:39414844-39415074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
433-679
               

               
Cow position:
               
chr6:57115100-57115343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
433-684
               

               
Cow position:
               
chr6:8365836-8366085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
434-628
               

               
Cow position:
               
chr6:67538304-67538114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
434-652
               

               
Cow position:
               
chr6:47648210-47647995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
434-652
               

               
Cow position:
               
chr6:54848954-54849170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
434-667
               

               
Cow position:
               
chr6:36643466-36643233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
434-672
               

               
Cow position:
               
chr6:58304440-58304670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
434-679
               

               
Cow position:
               
chr6:42728671-42728911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
434-681
               

               
Cow position:
               
chr6:14056444-14056200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 148
               

               
Conread position:
               
434-682
               

               
Cow position:
               
chr6:1090606-1090853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
217, 152
               

               
Conread position:
               
434-682
               

               
Cow position:
               
chr6:64429170-64428929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
435-652
               

               
Cow position:
               
chr6:55054063-55054278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
435-677
               

               
Cow position:
               
chr6:55548507-55548266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
213, 144
               

               
Conread position:
               
436-618
               

               
Cow position:
               
chr6:21467236-21467060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
440-653
               

               
Cow position:
               
chr6:34569439-34569656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 107
               

               
Conread position:
               
440-670
               

               
Cow position:
               
chr6:22876899-22876667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
208, 141
               

               
Conread position:
               
440-675
               

               
Cow position:
               
chr6:62707695-62707457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
203, 131
               

               
Conread position:
               
441-672
               

               
Cow position:
               
chr6:8369457-8369681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
441-673
               

               
Cow position:
               
chr6:51553174-51553409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
159, 116
               

               
Conread position:
               
445-682
               

               
Cow position:
               
chr6:56061697-56061930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
446-652
               

               
Cow position:
               
chr6:56022517-56022313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
446-677
               

               
Cow position:
               
chr6:45921176-45920956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
447-586
               

               
Cow position:
               
chr6:19508149-19508010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
449-656
               

               
Cow position:
               
chr6:55044601-55044398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
449-670
               

               
Cow position:
               
chr6:49685859-49686080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
449-674
               

               
Cow position:
               
chr6:58363671-58363444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
202, 133
               

               
Conread position:
               
450-652
               

               
Cow position:
               
chr6:62724597-62724797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
450-656
               

               
Cow position:
               
chr6:20075835-20076040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
450-668
               

               
Cow position:
               
chr6:57072464-57072678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
450-669
               

               
Cow position:
               
chr6:15058418-15058631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
204, 125
               

               
Conread position:
               
450-677
               

               
Cow position:
               
chr6:8315424-8315649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
450-682
               

               
Cow position:
               
chr6:15587553-15587326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
450-682
               

               
Cow position:
               
chr6:59015528-59015309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
173, 31
               

               
Conread position:
               
450-684
               

               
Cow position:
               
chr6:40029938-40030169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
451-663
               

               
Cow position:
               
chr6:13742031-13742237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
451-667
               

               
Cow position:
               
chr6:36225151-36225364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
451-671
               

               
Cow position:
               
chr6:6614665-6614884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
199, 20
               

               
Conread position:
               
451-671
               

               
Cow position:
               
chr6:46206340-46206550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
451-674
               

               
Cow position:
               
chr6:36163786-36164006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
451-675
               

               
Cow position:
               
chr6:15974477-15974263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
452-640
               

               
Cow position:
               
chr6:47022604-47022786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
452-650
               

               
Cow position:
               
chr6:24903534-24903338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
452-656
               

               
Cow position:
               
chr6:23058255-23058458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
199, 130
               

               
Conread position:
               
452-679
               

               
Cow position:
               
chr6:26408463-26408235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 131
               

               
Conread position:
               
453-677
               

               
Cow position:
               
chr6:43906638-43906414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
194, 18
               

               
Conread position:
               
453-677
               

               
Cow position:
               
chr6:55517920-55518144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
195, 121
               

               
Conread position:
               
454-589
               

               
Cow position:
               
chr6:16738406-16738539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
454-652
               

               
Cow position:
               
chr6:50883632-50883440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 110
               

               
Conread position:
               
454-671
               

               
Cow position:
               
chr6:68246788-68246573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
454-679
               

               
Cow position:
               
chr6:69374787-69374569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
454-682
               

               
Cow position:
               
chr6:8187144-8186919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
455-640
               

               
Cow position:
               
chr6:14471410-14471592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
456-640
               

               
Cow position:
               
chr6:47450874-47450692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 88
               

               
Conread position:
               
456-656
               

               
Cow position:
               
chr6:1173909-1173704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
456-681
               

               
Cow position:
               
chr6:44544102-44543878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
7, 108
               

               
Conread position:
               
456-684
               

               
Cow position:
               
chr6:27636362-27636585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 88
               

               
Conread position:
               
457-640
               

               
Cow position:
               
chr6:34380766-34380589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
457-661
               

               
Cow position:
               
chr6:54820880-54821082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
457-668
               

               
Cow position:
               
chr6:57248564-57248772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
457-682
               

               
Cow position:
               
chr6:48893883-48893657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
194, 123
               

               
Conread position:
               
457-684
               

               
Cow position:
               
chr6:633204-632973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 198
               

               
Conread position:
               
458-652
               

               
Cow position:
               
chr6:26054855-26054661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
105, 126
               

               
Conread position:
               
458-655
               

               
Cow position:
               
chr6:34722055-34721869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
161, 56
               

               
Conread position:
               
458-656
               

               
Cow position:
               
chr6:45160008-45159812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
459-622
               

               
Cow position:
               
chr6:30895940-30895781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
459-668
               

               
Cow position:
               
chr6:50451893-50452101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
459-671
               

               
Cow position:
               
chr6:63020395-63020601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
191, 12
               

               
Conread position:
               
459-672
               

               
Cow position:
               
chr6:35985086-35984875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
461-667
               

               
Cow position:
               
chr6:57299810-57300024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
461-683
               

               
Cow position:
               
chr6:55014931-55015154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 123
               

               
Conread position:
               
462-652
               

               
Cow position:
               
chr6:57467650-57467838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
462-672
               

               
Cow position:
               
chr6:18776304-18776504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
462-677
               

               
Cow position:
               
chr6:62805696-62805910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
188, 119
               

               
Conread position:
               
463-679
               

               
Cow position:
               
chr6:19052671-19052883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
463-683
               

               
Cow position:
               
chr6:54679582-54679802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
154, 119
               

               
Conread position:
               
464-635
               

               
Cow position:
               
chr6:32336086-32336261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
464-653
               

               
Cow position:
               
chr6:68272658-68272843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
464-669
               

               
Cow position:
               
chr6:58697576-58697371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
184, 124
               

               
Conread position:
               
464-669
               

               
Cow position:
               
chr6:60186607-60186395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
465-652
               

               
Cow position:
               
chr6:50682241-50682060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
465-671
               

               
Cow position:
               
chr6:28562112-28561910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
465-675
               

               
Cow position:
               
chr6:21052393-21052184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
96, 117
               

               
Conread position:
               
465-675
               

               
Cow position:
               
chr6:34076218-34076422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
465-682
               

               
Cow position:
               
chr6:18440421-18440207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
183, 116
               

               
Conread position:
               
465-683
               

               
Cow position:
               
chr6:66293541-66293753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
188, 116
               

               
Conread position:
               
466-640
               

               
Cow position:
               
chr6:61644801-61644629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
467-654
               

               
Cow position:
               
chr6:17404619-17404804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 44
               

               
Conread position:
               
471-663
               

               
Cow position:
               
chr6:55919872-55919681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
179, 111
               

               
Conread position:
               
471-665
               

               
Cow position:
               
chr6:54889662-54889856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr6:28559610-28559801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 83
               

               
Conread position:
               
482-655
               

               
Cow position:
               
chr6:56581985-56581812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
483-652
               

               
Cow position:
               
chr6:19936495-19936329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
483-675
               

               
Cow position:
               
chr6:55060937-55061132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
484-659
               

               
Cow position:
               
chr6:5445743-5445914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
484-672
               

               
Cow position:
               
chr6:16137695-16137510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 93
               

               
Conread position:
               
484-672
               

               
Cow position:
               
chr6:53732057-53732245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
169, 90
               

               
Conread position:
               
484-674
               

               
Cow position:
               
chr6:16411686-16411873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
486-673
               

               
Cow position:
               
chr6:54840430-54840239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
489-649
               

               
Cow position:
               
chr6:10163746-10163910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
489-652
               

               
Cow position:
               
chr6:21175418-21175573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
489-677
               

               
Cow position:
               
chr6:16627815-16627992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
491-672
               

               
Cow position:
               
chr6:16357519-16357700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 53
               

               
Conread position:
               
491-682
               

               
Cow position:
               
chr6:59687730-59687542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
492-671
               

               
Cow position:
               
chr6:3936866-3937048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
495-662
               

               
Cow position:
               
chr6:50445031-50444866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
495-664
               

               
Cow position:
               
chr6:67374590-67374426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
496-673
               

               
Cow position:
               
chr6:31928724-31928898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr6:26764740-26764555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
497-678
               

               
Cow position:
               
chr6:57935484-57935311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
497-679
               

               
Cow position:
               
chr6:13097312-13097133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
497-680
               

               
Cow position:
               
chr6:54828234-54828052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
154, 85
               

               
Conread position:
               
498-675
               

               
Cow position:
               
chr6:16016123-16016296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
500-679
               

               
Cow position:
               
chr6:15111750-15111569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
508-652
               

               
Cow position:
               
chr6:23381569-23381427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
508-673
               

               
Cow position:
               
chr6:55196312-55196477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 75
               

               
Conread position:
               
517-655
               

               
Cow position:
               
chr6:65831469-65831605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
536-666
               

               
Cow position:
               
chr6:16738740-16738868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               
Show alignments to all cow chromosomes.