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Cow genome map

           
Conread name:
           
Ss1.1-pigcb_1823.5
        

               
Conread position:
               
171-544
               

               
Cow position:
               
chrX:45089205-45089568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
178-598
               

               
Cow position:
               
chrX:45174608-45175022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
11, 151
               

               
Conread position:
               
180-654
               

               
Cow position:
               
chrX:32329928-32330403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 56
               

               
Conread position:
               
182-326
               

               
Cow position:
               
chrX:46430089-46429948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
182-576
               

               
Cow position:
               
chrX:11073421-11073036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
182-579
               

               
Cow position:
               
chrX:6690478-6690102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
182-579
               

               
Cow position:
               
chrX:13382094-13382483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 159
               

               
Conread position:
               
182-652
               

               
Cow position:
               
chrX:38852964-38853439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
182-669
               

               
Cow position:
               
chrX:16762541-16763012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
183-400
               

               
Cow position:
               
chrX:38840658-38840870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
184-648
               

               
Cow position:
               
chrX:22074572-22075019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
228, 93
               

               
Conread position:
               
185-400
               

               
Cow position:
               
chrX:46315606-46315396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
188-678
               

               
Cow position:
               
chrX:20677140-20677616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 39
               

               
Conread position:
               
191-491
               

               
Cow position:
               
chrX:20792039-20791745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
210, 86
               

               
Conread position:
               
191-504
               

               
Cow position:
               
chrX:7497024-7497326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
242, 12
               

               
Conread position:
               
192-412
               

               
Cow position:
               
chrX:37048801-37048584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 136
               

               
Conread position:
               
192-499
               

               
Cow position:
               
chrX:24105406-24105702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
227, 90
               

               
Conread position:
               
192-560
               

               
Cow position:
               
chrX:35288440-35288794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
228, 72
               

               
Conread position:
               
192-574
               

               
Cow position:
               
chrX:15007371-15006997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
192-665
               

               
Cow position:
               
chrX:45501928-45502375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 136
               

               
Conread position:
               
192-680
               

               
Cow position:
               
chrX:15147406-15146942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
456, 21
               

               
Conread position:
               
192-682
               

               
Cow position:
               
chrX:17231514-17231991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
356, 99
               

               
Conread position:
               
193-368
               

               
Cow position:
               
chrX:32978475-32978308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
193-476
               

               
Cow position:
               
chrX:28105702-28105973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
193-521
               

               
Cow position:
               
chrX:11939143-11938833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
259, 26
               

               
Conread position:
               
193-538
               

               
Cow position:
               
chrX:37416294-37415959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
261, 88
               

               
Conread position:
               
193-669
               

               
Cow position:
               
chrX:31250173-31250637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
424, 19
               

               
Conread position:
               
193-674
               

               
Cow position:
               
chrX:4269287-4268820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
194-317
               

               
Cow position:
               
chrX:5856545-5856422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-324
               

               
Cow position:
               
chrX:23017783-23017914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
194-342
               

               
Cow position:
               
chrX:2186040-2186185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 65
               

               
Conread position:
               
194-412
               

               
Cow position:
               
chrX:42282214-42282421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chrX:20752041-20752280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
194-545
               

               
Cow position:
               
chrX:14221861-14222199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
194-572
               

               
Cow position:
               
chrX:30543504-30543134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
237, 18
               

               
Conread position:
               
194-579
               

               
Cow position:
               
chrX:14599311-14599690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 131
               

               
Conread position:
               
194-614
               

               
Cow position:
               
chrX:34532309-34532708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
194-617
               

               
Cow position:
               
chrX:34663061-34662653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 14
               

               
Conread position:
               
194-628
               

               
Cow position:
               
chrX:24317844-24318270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
183, 18
               

               
Conread position:
               
194-675
               

               
Cow position:
               
chrX:41790662-41790177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 18
               

               
Conread position:
               
194-677
               

               
Cow position:
               
chrX:34554508-34554979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
194-678
               

               
Cow position:
               
chrX:33466395-33466875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 79
               

               
Conread position:
               
194-684
               

               
Cow position:
               
chrX:42492732-42492264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
195-397
               

               
Cow position:
               
chrX:11806234-11806035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
195-684
               

               
Cow position:
               
chrX:34454452-34454921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 58
               

               
Conread position:
               
195-684
               

               
Cow position:
               
chrX:38935064-38935544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 157
               

               
Conread position:
               
196-412
               

               
Cow position:
               
chrX:35284406-35284613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
197-290
               

               
Cow position:
               
chrX:33519402-33519495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-302
               

               
Cow position:
               
chrX:616621-616515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
197-308
               

               
Cow position:
               
chrX:2523945-2523834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-323
               

               
Cow position:
               
chrX:32871001-32870876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
197-331
               

               
Cow position:
               
chrX:42086646-42086780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-334
               

               
Cow position:
               
chrX:19930441-19930573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-334
               

               
Cow position:
               
chrX:26619578-26619443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-336
               

               
Cow position:
               
chrX:45787439-45787571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
197-342
               

               
Cow position:
               
chrX:16531784-16531924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
197-344
               

               
Cow position:
               
chrX:7382108-7382250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
197-351
               

               
Cow position:
               
chrX:48370881-48371032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
197-352
               

               
Cow position:
               
chrX:48536880-48536729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
197-368
               

               
Cow position:
               
chrX:42855193-42855364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-371
               

               
Cow position:
               
chrX:6639909-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
197-373
               

               
Cow position:
               
chrX:35388122-35387948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
197-377
               

               
Cow position:
               
chrX:36840658-36840834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
197-380
               

               
Cow position:
               
chrX:11581719-11581906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 108
               

               
Conread position:
               
197-398
               

               
Cow position:
               
chrX:41403757-41403958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-398
               

               
Cow position:
               
chrX:41410305-41410506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-399
               

               
Cow position:
               
chrX:33020271-33020464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-399
               

               
Cow position:
               
chrX:38967435-38967628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
197-400
               

               
Cow position:
               
chrX:11746627-11746828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
197-400
               

               
Cow position:
               
chrX:25419376-25419176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
197-401
               

               
Cow position:
               
chrX:7425250-7425451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
197-411
               

               
Cow position:
               
chrX:21665808-21665602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-411
               

               
Cow position:
               
chrX:42339151-42338954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
197-421
               

               
Cow position:
               
chrX:19019327-19019103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
13, 109
               

               
Conread position:
               
197-424
               

               
Cow position:
               
chrX:35609771-35609993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
197-426
               

               
Cow position:
               
chrX:10437880-10437662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 83
               

               
Conread position:
               
197-435
               

               
Cow position:
               
chrX:13265835-13265608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
153, 85
               

               
Conread position:
               
197-443
               

               
Cow position:
               
chrX:4750513-4750281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
216, 15
               

               
Conread position:
               
197-443
               

               
Cow position:
               
chrX:20582815-20583044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
197-446
               

               
Cow position:
               
chrX:23497878-23497642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
197-446
               

               
Cow position:
               
chrX:47232622-47232857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
227, 91
               

               
Conread position:
               
197-451
               

               
Cow position:
               
chrX:10095811-10096062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
170, 92
               

               
Conread position:
               
197-459
               

               
Cow position:
               
chrX:40567384-40567636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 169
               

               
Conread position:
               
197-459
               

               
Cow position:
               
chrX:41743698-41743952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
183, 15
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chrX:12115823-12116086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 77
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chrX:14924785-14925039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chrX:25237962-25238218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
200, 15
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chrX:29509659-29509399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
205, 98
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chrX:47379682-47379428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
197-463
               

               
Cow position:
               
chrX:47757144-47756886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
197-464
               

               
Cow position:
               
chrX:40647763-40648029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
197-466
               

               
Cow position:
               
chrX:28157270-28157543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
62, 115
               

               
Conread position:
               
197-468
               

               
Cow position:
               
chrX:42994399-42994660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
197-469
               

               
Cow position:
               
chrX:40452428-40452170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chrX:10306455-10306725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 109
               

               
Conread position:
               
197-472
               

               
Cow position:
               
chrX:35681130-35681393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
197-472
               

               
Cow position:
               
chrX:43049127-43049394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 131
               

               
Conread position:
               
197-473
               

               
Cow position:
               
chrX:42461961-42461692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
182, 100
               

               
Conread position:
               
197-473
               

               
Cow position:
               
chrX:42874763-42875035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chrX:9953926-9954192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chrX:18456177-18456459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
142, 131
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chrX:40788989-40789265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
118, 132
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chrX:9855085-9855352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chrX:24132366-24132096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chrX:28845631-28845887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
209, 13
               

               
Conread position:
               
197-475
               

               
Cow position:
               
chrX:35042004-35042272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
114, 131
               

               
Conread position:
               
197-478
               

               
Cow position:
               
chrX:8070915-8070642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chrX:1810376-1810102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
197-479
               

               
Cow position:
               
chrX:41167179-41166904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
180, 15
               

               
Conread position:
               
197-486
               

               
Cow position:
               
chrX:19188721-19188996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
197-487
               

               
Cow position:
               
chrX:14900936-14900667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-488
               

               
Cow position:
               
chrX:7718638-7718915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
197-490
               

               
Cow position:
               
chrX:26876096-26875812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
197-500
               

               
Cow position:
               
chrX:11589807-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
197-500
               

               
Cow position:
               
chrX:37843505-37843798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
197-502
               

               
Cow position:
               
chrX:46044829-46045126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 109
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chrX:20709856-20710157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chrX:42011065-42011364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chrX:42507862-42507565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
96, 72
               

               
Conread position:
               
197-505
               

               
Cow position:
               
chrX:13785582-13785279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chrX:25337964-25338279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
55, 66
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chrX:27176535-27176221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 149
               

               
Conread position:
               
197-515
               

               
Cow position:
               
chrX:15814882-15815178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
197-517
               

               
Cow position:
               
chrX:41198889-41199204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
197-519
               

               
Cow position:
               
chrX:22624266-22624574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
210, 43
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chrX:26625892-26625571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
95, 131
               

               
Conread position:
               
197-523
               

               
Cow position:
               
chrX:38936486-38936802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
226, 15
               

               
Conread position:
               
197-529
               

               
Cow position:
               
chrX:23264652-23264325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
209, 129
               

               
Conread position:
               
197-531
               

               
Cow position:
               
chrX:2467664-2467994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 190
               

               
Conread position:
               
197-536
               

               
Cow position:
               
chrX:26440995-26440673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 95
               

               
Conread position:
               
197-539
               

               
Cow position:
               
chrX:27498553-27498890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
197-542
               

               
Cow position:
               
chrX:11856214-11856551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 30
               

               
Conread position:
               
197-544
               

               
Cow position:
               
chrX:20030038-20030377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
197-544
               

               
Cow position:
               
chrX:46722956-46722612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 151
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chrX:754743-755088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
285, 130
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chrX:35258947-35258607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chrX:38102659-38102322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
320, 11
               

               
Conread position:
               
197-545
               

               
Cow position:
               
chrX:39704485-39704836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
197, 72
               

               
Conread position:
               
197-551
               

               
Cow position:
               
chrX:1105019-1104666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
310, 130
               

               
Conread position:
               
197-551
               

               
Cow position:
               
chrX:19690003-19690345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chrX:42470152-42469810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
156, 82
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chrX:42587644-42587290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
229, 58
               

               
Conread position:
               
197-553
               

               
Cow position:
               
chrX:39558563-39558217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 95
               

               
Conread position:
               
197-557
               

               
Cow position:
               
chrX:917584-917232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
197-557
               

               
Cow position:
               
chrX:11082828-11082486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chrX:10412201-10411847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 20
               

               
Conread position:
               
197-559
               

               
Cow position:
               
chrX:47054743-47054387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chrX:1503124-1503466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chrX:17042475-17042823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 66
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chrX:17541749-17542098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chrX:17662812-17662459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chrX:32309891-32310245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chrX:37119384-37119731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
197-565
               

               
Cow position:
               
chrX:43527288-43527652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
129, 84
               

               
Conread position:
               
197-568
               

               
Cow position:
               
chrX:17964737-17964374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chrX:29289361-29289728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
197-572
               

               
Cow position:
               
chrX:23583343-23583712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
106, 116
               

               
Conread position:
               
197-574
               

               
Cow position:
               
chrX:23091666-23092026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
222, 85
               

               
Conread position:
               
197-574
               

               
Cow position:
               
chrX:45430232-45429868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
360, 94
               

               
Conread position:
               
197-576
               

               
Cow position:
               
chrX:20801564-20801926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
345, 67
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chrX:6265801-6265442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
343, 73
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chrX:11717995-11717626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 12
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chrX:37836371-37836735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chrX:619223-618850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 128
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chrX:4044065-4043709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chrX:27516317-27516676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chrX:40269261-40269652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
45, 136
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chrX:42171514-42171142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
209, 15
               

               
Conread position:
               
197-580
               

               
Cow position:
               
chrX:6278721-6278339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
197-580
               

               
Cow position:
               
chrX:28134131-28134497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
197-580
               

               
Cow position:
               
chrX:38006983-38006613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
197-585
               

               
Cow position:
               
chrX:33639756-33640139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 57
               

               
Conread position:
               
197-586
               

               
Cow position:
               
chrX:9416908-9416521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
215, 76
               

               
Conread position:
               
197-586
               

               
Cow position:
               
chrX:33493560-33493938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
197-586
               

               
Cow position:
               
chrX:41884633-41884247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 136
               

               
Conread position:
               
197-607
               

               
Cow position:
               
chrX:8797033-8797436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
197-615
               

               
Cow position:
               
chrX:34502705-34503119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 12
               

               
Conread position:
               
197-617
               

               
Cow position:
               
chrX:6413831-6414231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
127, 51
               

               
Conread position:
               
197-627
               

               
Cow position:
               
chrX:1055603-1055178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 12
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chrX:15596823-15597233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chrX:22821832-22822260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 129
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chrX:23514233-23513802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chrX:30921970-30922377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chrX:32623367-32623779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
391, 128
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chrX:34238506-34238928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 17
               

               
Conread position:
               
197-629
               

               
Cow position:
               
chrX:35542676-35543089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 62
               

               
Conread position:
               
197-632
               

               
Cow position:
               
chrX:13647999-13647577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
197-638
               

               
Cow position:
               
chrX:47344079-47344513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
197-639
               

               
Cow position:
               
chrX:4768535-4768943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
209, 69
               

               
Conread position:
               
197-640
               

               
Cow position:
               
chrX:1616263-1615842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
197-642
               

               
Cow position:
               
chrX:8899809-8900237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
353, 125
               

               
Conread position:
               
197-643
               

               
Cow position:
               
chrX:27514653-27515078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 162
               

               
Conread position:
               
197-644
               

               
Cow position:
               
chrX:34543572-34544006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 50
               

               
Conread position:
               
197-647
               

               
Cow position:
               
chrX:29602048-29601606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chrX:6544041-6544469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
211, 72
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chrX:22482904-22482465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
250, 95
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chrX:38642045-38642466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
197-649
               

               
Cow position:
               
chrX:15485843-15485408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
197-649
               

               
Cow position:
               
chrX:35268675-35269081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
197-651
               

               
Cow position:
               
chrX:48236596-48237044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
63, 129
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:3654389-3654831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
186, 130
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:9360668-9361110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 59
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:12249590-12250043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:12290520-12290946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 93
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:21642693-21642253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:24280720-24281184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 137
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:27106043-27106500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
209, 130
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:27394229-27393790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
395, 86
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:31443036-31442611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:34441665-34441225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 15
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:34565082-34565513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
219, 22
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:37489515-37489957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 81
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:40557891-40557430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
357, 57
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:44054586-44055031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
197-652
               

               
Cow position:
               
chrX:48010379-48010833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 202
               

               
Conread position:
               
197-653
               

               
Cow position:
               
chrX:42381315-42380883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
197-654
               

               
Cow position:
               
chrX:38963894-38964327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 12
               

               
Conread position:
               
197-655
               

               
Cow position:
               
chrX:9201332-9201774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
421, 15
               

               
Conread position:
               
197-655
               

               
Cow position:
               
chrX:36197752-36198207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chrX:13177680-13177252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
250, 83
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chrX:25035602-25035149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 17
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chrX:31949146-31948701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 88
               

               
Conread position:
               
197-658
               

               
Cow position:
               
chrX:36283130-36283574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 185
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chrX:38094740-38094291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 15
               

               
Conread position:
               
197-659
               

               
Cow position:
               
chrX:47211065-47210601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 108
               

               
Conread position:
               
197-663
               

               
Cow position:
               
chrX:28847094-28846654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 84
               

               
Conread position:
               
197-665
               

               
Cow position:
               
chrX:45448672-45449153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 154
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chrX:7351084-7351544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 39
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chrX:27442770-27442296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 39
               

               
Conread position:
               
197-666
               

               
Cow position:
               
chrX:46532724-46532249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chrX:17794770-17795224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
213, 94
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chrX:40826962-40826501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 62
               

               
Conread position:
               
197-670
               

               
Cow position:
               
chrX:11633463-11633931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
453, 95
               

               
Conread position:
               
197-670
               

               
Cow position:
               
chrX:21626166-21625702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
169, 129
               

               
Conread position:
               
197-671
               

               
Cow position:
               
chrX:9635396-9634945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
197-671
               

               
Cow position:
               
chrX:9651261-9650780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 148
               

               
Conread position:
               
197-672
               

               
Cow position:
               
chrX:32020337-32019886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
197-673
               

               
Cow position:
               
chrX:10866082-10865621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 11
               

               
Conread position:
               
197-673
               

               
Cow position:
               
chrX:44192658-44192190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
302, 45
               

               
Conread position:
               
197-674
               

               
Cow position:
               
chrX:27705378-27705836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
197-677
               

               
Cow position:
               
chrX:41238578-41238112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 12
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chrX:16541891-16541400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 12
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chrX:21064071-21064543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 56
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chrX:22812847-22813320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 12
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chrX:28013655-28013187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
262, 76
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chrX:31436265-31436730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
197-680
               

               
Cow position:
               
chrX:41673888-41674353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chrX:151686-152161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
389, 59
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chrX:5638384-5637919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chrX:5872098-5872588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 191
               

               
Conread position:
               
197-681
               

               
Cow position:
               
chrX:46073037-46072573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chrX:7721769-7722233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chrX:23564012-23563537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
197-682
               

               
Cow position:
               
chrX:31489297-31489782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chrX:11844456-11843974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 16
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chrX:20340106-20339637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chrX:21672336-21672825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 130
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chrX:34754407-34753922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
272, 146
               

               
Conread position:
               
197-683
               

               
Cow position:
               
chrX:47588486-47588969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chrX:20887859-20887389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 15
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chrX:21663094-21663558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 30
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chrX:30133539-30133060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chrX:44961532-44962016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 106
               

               
Conread position:
               
197-684
               

               
Cow position:
               
chrX:47873556-47873076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 44
               

               
Conread position:
               
198-451
               

               
Cow position:
               
chrX:19015228-19015467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
222, 66
               

               
Conread position:
               
198-451
               

               
Cow position:
               
chrX:38439259-38439511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 128
               

               
Conread position:
               
198-460
               

               
Cow position:
               
chrX:32128194-32127953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
198-521
               

               
Cow position:
               
chrX:47481585-47481896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
181, 82
               

               
Conread position:
               
198-544
               

               
Cow position:
               
chrX:44835030-44834674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
98, 88
               

               
Conread position:
               
198-552
               

               
Cow position:
               
chrX:1514615-1514288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
198-560
               

               
Cow position:
               
chrX:38071985-38071633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
198-560
               

               
Cow position:
               
chrX:41122858-41123198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
198-573
               

               
Cow position:
               
chrX:45414514-45414155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
144, 79
               

               
Conread position:
               
198-578
               

               
Cow position:
               
chrX:20697822-20697454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 72
               

               
Conread position:
               
198-620
               

               
Cow position:
               
chrX:45373506-45373088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
154, 37
               

               
Conread position:
               
198-629
               

               
Cow position:
               
chrX:46771186-46770757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
198-641
               

               
Cow position:
               
chrX:13868480-13868921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 14
               

               
Conread position:
               
198-669
               

               
Cow position:
               
chrX:42247398-42246936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 95
               

               
Conread position:
               
198-677
               

               
Cow position:
               
chrX:27432133-27431675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 127
               

               
Conread position:
               
198-684
               

               
Cow position:
               
chrX:12980045-12979579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 130
               

               
Conread position:
               
199-336
               

               
Cow position:
               
chrX:8492971-8492834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
199-356
               

               
Cow position:
               
chrX:42499242-42499089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 83
               

               
Conread position:
               
199-374
               

               
Cow position:
               
chrX:877236-877071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
199-399
               

               
Cow position:
               
chrX:48684436-48684244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
193, 79
               

               
Conread position:
               
199-400
               

               
Cow position:
               
chrX:2029177-2029373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
199-455
               

               
Cow position:
               
chrX:44053045-44053294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
220, 78
               

               
Conread position:
               
199-458
               

               
Cow position:
               
chrX:9997546-9997297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
206, 13
               

               
Conread position:
               
199-462
               

               
Cow position:
               
chrX:23970176-23970420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
212, 13
               

               
Conread position:
               
199-485
               

               
Cow position:
               
chrX:45043344-45043640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
7, 212
               

               
Conread position:
               
199-500
               

               
Cow position:
               
chrX:28111293-28111589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
55, 66
               

               
Conread position:
               
199-519
               

               
Cow position:
               
chrX:27680190-27680496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
220, 10
               

               
Conread position:
               
199-533
               

               
Cow position:
               
chrX:7571693-7572017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
213, 94
               

               
Conread position:
               
199-544
               

               
Cow position:
               
chrX:48195254-48194913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
217, 81
               

               
Conread position:
               
199-545
               

               
Cow position:
               
chrX:16289775-16289437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
325, 128
               

               
Conread position:
               
199-560
               

               
Cow position:
               
chrX:10959616-10959256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 150
               

               
Conread position:
               
199-576
               

               
Cow position:
               
chrX:37910239-37910597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
220, 55
               

               
Conread position:
               
199-586
               

               
Cow position:
               
chrX:27772169-27771803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
199-608
               

               
Cow position:
               
chrX:16416295-16416687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
366, 23
               

               
Conread position:
               
199-625
               

               
Cow position:
               
chrX:32171095-32170685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
210, 60
               

               
Conread position:
               
199-635
               

               
Cow position:
               
chrX:12309602-12309174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chrX:9252391-9251935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 63
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chrX:14884175-14883729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
199-652
               

               
Cow position:
               
chrX:40183563-40183126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
199-662
               

               
Cow position:
               
chrX:26492789-26493243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 129
               

               
Conread position:
               
199-669
               

               
Cow position:
               
chrX:21593070-21593535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 128
               

               
Conread position:
               
199-672
               

               
Cow position:
               
chrX:25816109-25815650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 77
               

               
Conread position:
               
200-378
               

               
Cow position:
               
chrX:31260842-31260668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
200-412
               

               
Cow position:
               
chrX:17271501-17271292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
132, 142
               

               
Conread position:
               
200-449
               

               
Cow position:
               
chrX:678780-678541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
229, 112
               

               
Conread position:
               
200-465
               

               
Cow position:
               
chrX:36250074-36249817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
200-502
               

               
Cow position:
               
chrX:17631014-17630722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
212, 12
               

               
Conread position:
               
200-533
               

               
Cow position:
               
chrX:47967387-47967719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
203, 86
               

               
Conread position:
               
200-544
               

               
Cow position:
               
chrX:48652939-48652599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
200-553
               

               
Cow position:
               
chrX:37232197-37232539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
142, 128
               

               
Conread position:
               
200-560
               

               
Cow position:
               
chrX:630520-630171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
200-568
               

               
Cow position:
               
chrX:3130369-3130718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
200-570
               

               
Cow position:
               
chrX:41192475-41192853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
200-579
               

               
Cow position:
               
chrX:17888618-17888265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
200-614
               

               
Cow position:
               
chrX:28866205-28865814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
235, 54
               

               
Conread position:
               
200-627
               

               
Cow position:
               
chrX:28878372-28877963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
200-659
               

               
Cow position:
               
chrX:38549236-38549682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 126
               

               
Conread position:
               
200-668
               

               
Cow position:
               
chrX:27509232-27508779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 82
               

               
Conread position:
               
201-373
               

               
Cow position:
               
chrX:16324175-16324010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chrX:34401786-34402083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
225, 58
               

               
Conread position:
               
201-551
               

               
Cow position:
               
chrX:13245380-13245728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
238, 58
               

               
Conread position:
               
201-620
               

               
Cow position:
               
chrX:5017619-5017215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
213, 81
               

               
Conread position:
               
201-640
               

               
Cow position:
               
chrX:8730868-8731310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 142
               

               
Conread position:
               
201-644
               

               
Cow position:
               
chrX:20151639-20152068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
201-651
               

               
Cow position:
               
chrX:29542430-29542001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
201-672
               

               
Cow position:
               
chrX:4633062-4632606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 71
               

               
Conread position:
               
201-675
               

               
Cow position:
               
chrX:27446477-27446935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 93
               

               
Conread position:
               
201-684
               

               
Cow position:
               
chrX:3579735-3580205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
202-464
               

               
Cow position:
               
chrX:28836112-28835859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
202-485
               

               
Cow position:
               
chrX:12018065-12018356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
202-672
               

               
Cow position:
               
chrX:27174785-27175249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 53
               

               
Conread position:
               
202-677
               

               
Cow position:
               
chrX:30963081-30962622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 10
               

               
Conread position:
               
203-468
               

               
Cow position:
               
chrX:47453917-47454180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
137, 100
               

               
Conread position:
               
203-484
               

               
Cow position:
               
chrX:15139753-15139484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
203-494
               

               
Cow position:
               
chrX:6234659-6234376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
203-533
               

               
Cow position:
               
chrX:45845886-45846213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
210, 122
               

               
Conread position:
               
203-544
               

               
Cow position:
               
chrX:45404042-45403703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
203-560
               

               
Cow position:
               
chrX:7646051-7646395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
311, 55
               

               
Conread position:
               
203-579
               

               
Cow position:
               
chrX:18695129-18694774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
327, 75
               

               
Conread position:
               
203-629
               

               
Cow position:
               
chrX:31294753-31294364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
363, 27
               

               
Conread position:
               
203-651
               

               
Cow position:
               
chrX:8925496-8925907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
203-652
               

               
Cow position:
               
chrX:11655879-11656306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
203-652
               

               
Cow position:
               
chrX:40035655-40035214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
203-660
               

               
Cow position:
               
chrX:9425951-9425526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
203-664
               

               
Cow position:
               
chrX:28632689-28632242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
204, 51
               

               
Conread position:
               
203-673
               

               
Cow position:
               
chrX:45598812-45598357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 9
               

               
Conread position:
               
203-675
               

               
Cow position:
               
chrX:47046728-47046265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
203-681
               

               
Cow position:
               
chrX:34411631-34412105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 107
               

               
Conread position:
               
203-684
               

               
Cow position:
               
chrX:40481081-40480587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 17
               

               
Conread position:
               
204-532
               

               
Cow position:
               
chrX:35224093-35224407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
204-555
               

               
Cow position:
               
chrX:36778199-36778532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
204-652
               

               
Cow position:
               
chrX:24366040-24365594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
204-672
               

               
Cow position:
               
chrX:45110447-45110898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
267, 110
               

               
Conread position:
               
205-457
               

               
Cow position:
               
chrX:26285772-26286017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
222, 72
               

               
Conread position:
               
205-533
               

               
Cow position:
               
chrX:21004474-21004796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
214, 93
               

               
Conread position:
               
205-628
               

               
Cow position:
               
chrX:35273144-35273576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
205-640
               

               
Cow position:
               
chrX:10831704-10831265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 119
               

               
Conread position:
               
205-659
               

               
Cow position:
               
chrX:44396807-44397247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
205-668
               

               
Cow position:
               
chrX:46032929-46032485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 93
               

               
Conread position:
               
205-672
               

               
Cow position:
               
chrX:32420011-32420458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
206-554
               

               
Cow position:
               
chrX:7277713-7278044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
206-667
               

               
Cow position:
               
chrX:36975744-36976193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 6
               

               
Conread position:
               
206-680
               

               
Cow position:
               
chrX:46587611-46588074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 52
               

               
Conread position:
               
209-456
               

               
Cow position:
               
chrX:17908487-17908253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
209-648
               

               
Cow position:
               
chrX:39938726-39938314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
193, 86
               

               
Conread position:
               
210-474
               

               
Cow position:
               
chrX:25713594-25713849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
210-580
               

               
Cow position:
               
chrX:36067817-36068178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
345, 83
               

               
Conread position:
               
212-565
               

               
Cow position:
               
chrX:43780053-43779708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
212-579
               

               
Cow position:
               
chrX:4515467-4515849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
212-586
               

               
Cow position:
               
chrX:17725774-17726141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 57
               

               
Conread position:
               
212-648
               

               
Cow position:
               
chrX:1499469-1499878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
212-681
               

               
Cow position:
               
chrX:1176183-1175736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
212-684
               

               
Cow position:
               
chrX:15545694-15546146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
436, 42
               

               
Conread position:
               
213-412
               

               
Cow position:
               
chrX:30833045-30832856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
213-460
               

               
Cow position:
               
chrX:4091448-4091679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
213-544
               

               
Cow position:
               
chrX:47303079-47302755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
213-674
               

               
Cow position:
               
chrX:41879134-41878688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
214-368
               

               
Cow position:
               
chrX:29770377-29770224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
214-578
               

               
Cow position:
               
chrX:29545078-29544720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 51
               

               
Conread position:
               
215-469
               

               
Cow position:
               
chrX:34270209-34270450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
215-475
               

               
Cow position:
               
chrX:36961438-36961695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
110, 200
               

               
Conread position:
               
215-573
               

               
Cow position:
               
chrX:40809489-40809845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
196, 58
               

               
Conread position:
               
215-647
               

               
Cow position:
               
chrX:37781315-37780889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
87, 112
               

               
Conread position:
               
215-679
               

               
Cow position:
               
chrX:33000706-33001155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 92
               

               
Conread position:
               
216-652
               

               
Cow position:
               
chrX:16996310-16996722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
202, 57
               

               
Conread position:
               
217-447
               

               
Cow position:
               
chrX:40116226-40116443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
217-668
               

               
Cow position:
               
chrX:47484467-47484011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
417, 187
               

               
Conread position:
               
219-502
               

               
Cow position:
               
chrX:37540931-37541198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
219-580
               

               
Cow position:
               
chrX:3489078-3488732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
198, 54
               

               
Conread position:
               
220-459
               

               
Cow position:
               
chrX:45874806-45875036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
220-666
               

               
Cow position:
               
chrX:8869601-8869162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
220-666
               

               
Cow position:
               
chrX:41526716-41526292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
221-579
               

               
Cow position:
               
chrX:43730406-43730066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
222-570
               

               
Cow position:
               
chrX:44657155-44656808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
180, 80
               

               
Conread position:
               
222-576
               

               
Cow position:
               
chrX:31311835-31312184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 106
               

               
Conread position:
               
222-579
               

               
Cow position:
               
chrX:23785463-23785806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
104, 155
               

               
Conread position:
               
224-570
               

               
Cow position:
               
chrX:42235722-42235376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 106
               

               
Conread position:
               
224-652
               

               
Cow position:
               
chrX:36355934-36356332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
225-679
               

               
Cow position:
               
chrX:14955954-14955521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
425, 5
               

               
Conread position:
               
227-648
               

               
Cow position:
               
chrX:35383205-35382818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
227-657
               

               
Cow position:
               
chrX:161236-161633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
227-680
               

               
Cow position:
               
chrX:38218522-38218969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
180, 100
               

               
Conread position:
               
230-641
               

               
Cow position:
               
chrX:32820847-32821257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 11
               

               
Conread position:
               
233-579
               

               
Cow position:
               
chrX:45098932-45099286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
234-600
               

               
Cow position:
               
chrX:24288111-24287752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 99
               

               
Conread position:
               
234-615
               

               
Cow position:
               
chrX:31252239-31252599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
234-652
               

               
Cow position:
               
chrX:36060973-36061387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 166
               

               
Conread position:
               
234-678
               

               
Cow position:
               
chrX:9770863-9770436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 169
               

               
Conread position:
               
235-663
               

               
Cow position:
               
chrX:47186498-47186086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
105, 42
               

               
Conread position:
               
236-629
               

               
Cow position:
               
chrX:47166061-47165679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
318, 18
               

               
Conread position:
               
237-539
               

               
Cow position:
               
chrX:30221951-30222245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
285, 89
               

               
Conread position:
               
237-639
               

               
Cow position:
               
chrX:4279290-4278904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
372, 90
               

               
Conread position:
               
237-664
               

               
Cow position:
               
chrX:23122210-23122637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
237-675
               

               
Cow position:
               
chrX:18485619-18486054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 91
               

               
Conread position:
               
238-666
               

               
Cow position:
               
chrX:15231832-15231416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
412, 65
               

               
Conread position:
               
239-666
               

               
Cow position:
               
chrX:22387421-22387001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
239-684
               

               
Cow position:
               
chrX:35885903-35885471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 34
               

               
Conread position:
               
240-589
               

               
Cow position:
               
chrX:46433310-46433658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 166
               

               
Conread position:
               
240-663
               

               
Cow position:
               
chrX:6407376-6407780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
241-653
               

               
Cow position:
               
chrX:34792482-34792094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
241-668
               

               
Cow position:
               
chrX:4398954-4399360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
170, 87
               

               
Conread position:
               
242-665
               

               
Cow position:
               
chrX:25208017-25207619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 86
               

               
Conread position:
               
242-684
               

               
Cow position:
               
chrX:22921143-22921578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
246-678
               

               
Cow position:
               
chrX:8917226-8917648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
247-504
               

               
Cow position:
               
chrX:48385529-48385280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
97, 101
               

               
Conread position:
               
255-544
               

               
Cow position:
               
chrX:48571150-48570866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
260-511
               

               
Cow position:
               
chrX:12405543-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
262-574
               

               
Cow position:
               
chrX:11614546-11614845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
124, 12
               

               
Conread position:
               
262-666
               

               
Cow position:
               
chrX:5118656-5118255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
152, 66
               

               
Conread position:
               
265-620
               

               
Cow position:
               
chrX:27301718-27302073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
265-679
               

               
Cow position:
               
chrX:870313-869932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
266-648
               

               
Cow position:
               
chrX:21986443-21986077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
267-666
               

               
Cow position:
               
chrX:5305191-5305587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
280, 22
               

               
Conread position:
               
268-579
               

               
Cow position:
               
chrX:29680409-29680102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
268-640
               

               
Cow position:
               
chrX:27227974-27228345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 151
               

               
Conread position:
               
268-673
               

               
Cow position:
               
chrX:23561728-23562122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
229, 59
               

               
Conread position:
               
272-574
               

               
Cow position:
               
chrX:42873249-42873538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 5
               

               
Conread position:
               
272-579
               

               
Cow position:
               
chrX:11085201-11084905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
288, 68
               

               
Conread position:
               
272-652
               

               
Cow position:
               
chrX:34313889-34314249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
144, 39
               

               
Conread position:
               
272-652
               

               
Cow position:
               
chrX:47280076-47279708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
194, 56
               

               
Conread position:
               
272-676
               

               
Cow position:
               
chrX:5919352-5919739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
152, 56
               

               
Conread position:
               
272-681
               

               
Cow position:
               
chrX:29723597-29724007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 55
               

               
Conread position:
               
273-641
               

               
Cow position:
               
chrX:48646743-48646392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
273-666
               

               
Cow position:
               
chrX:43049916-43050313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
274-545
               

               
Cow position:
               
chrX:22454234-22453974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
275-579
               

               
Cow position:
               
chrX:9365815-9365518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
276-522
               

               
Cow position:
               
chrX:27685107-27685350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
227, 50
               

               
Conread position:
               
277-579
               

               
Cow position:
               
chrX:616401-616100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 51
               

               
Conread position:
               
277-656
               

               
Cow position:
               
chrX:18204602-18204234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
204, 51
               

               
Conread position:
               
277-676
               

               
Cow position:
               
chrX:37955694-37956099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 51
               

               
Conread position:
               
279-655
               

               
Cow position:
               
chrX:21327765-21328145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
280-579
               

               
Cow position:
               
chrX:7710679-7710380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
280-651
               

               
Cow position:
               
chrX:36393483-36393114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
121, 183
               

               
Conread position:
               
280-665
               

               
Cow position:
               
chrX:41870937-41871298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
139, 46
               

               
Conread position:
               
281-666
               

               
Cow position:
               
chrX:31729308-31729681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
367, 47
               

               
Conread position:
               
281-672
               

               
Cow position:
               
chrX:41027022-41027408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 45
               

               
Conread position:
               
287-573
               

               
Cow position:
               
chrX:38728608-38728886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
287-652
               

               
Cow position:
               
chrX:46547006-46546645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
293-675
               

               
Cow position:
               
chrX:4403191-4403570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
294-629
               

               
Cow position:
               
chrX:27946181-27945848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
287, 0
               

               
Conread position:
               
294-649
               

               
Cow position:
               
chrX:48262484-48262830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
294-653
               

               
Cow position:
               
chrX:40320283-40320637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
354, 96
               

               
Conread position:
               
294-680
               

               
Cow position:
               
chrX:18111268-18111632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
295-652
               

               
Cow position:
               
chrX:43115030-43115378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
297-572
               

               
Cow position:
               
chrX:5679685-5679421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
300-586
               

               
Cow position:
               
chrX:29194118-29194397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
232, 28
               

               
Conread position:
               
301-648
               

               
Cow position:
               
chrX:26881683-26881338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
301-649
               

               
Cow position:
               
chrX:46022673-46023000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
301-652
               

               
Cow position:
               
chrX:4296943-4296596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
301-666
               

               
Cow position:
               
chrX:24331663-24332019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
304-666
               

               
Cow position:
               
chrX:13923759-13924102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
305-622
               

               
Cow position:
               
chrX:34222599-34222911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 112
               

               
Conread position:
               
305-629
               

               
Cow position:
               
chrX:4992127-4991819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
305-656
               

               
Cow position:
               
chrX:17949601-17949260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 96
               

               
Conread position:
               
305-684
               

               
Cow position:
               
chrX:33654958-33654582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
307-652
               

               
Cow position:
               
chrX:40175058-40175404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
236, 21
               

               
Conread position:
               
311-559
               

               
Cow position:
               
chrX:48044619-48044378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
312-673
               

               
Cow position:
               
chrX:4512130-4512494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
314-681
               

               
Cow position:
               
chrX:22283729-22284096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
106, 24
               

               
Conread position:
               
315-579
               

               
Cow position:
               
chrX:16348671-16348413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
315-579
               

               
Cow position:
               
chrX:27119598-27119850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
315-580
               

               
Cow position:
               
chrX:37129163-37129428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
317-586
               

               
Cow position:
               
chrX:45884079-45883806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
324-560
               

               
Cow position:
               
chrX:46429920-46429680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
325-652
               

               
Cow position:
               
chrX:42855360-42855691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
326-646
               

               
Cow position:
               
chrX:1466068-1466385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
283, 77
               

               
Conread position:
               
327-649
               

               
Cow position:
               
chrX:10516164-10516479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
327-654
               

               
Cow position:
               
chrX:34837146-34836842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
328-653
               

               
Cow position:
               
chrX:29050156-29050471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 75
               

               
Conread position:
               
328-658
               

               
Cow position:
               
chrX:20168467-20168789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
328-682
               

               
Cow position:
               
chrX:12095864-12095512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 76
               

               
Conread position:
               
329-618
               

               
Cow position:
               
chrX:40283036-40283317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
223, 74
               

               
Conread position:
               
330-590
               

               
Cow position:
               
chrX:33205053-33204802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
330-652
               

               
Cow position:
               
chrX:48071072-48071390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
331-655
               

               
Cow position:
               
chrX:40680523-40680846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 239
               

               
Conread position:
               
332-659
               

               
Cow position:
               
chrX:39219994-39220323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
335-678
               

               
Cow position:
               
chrX:35590841-35590500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
337-578
               

               
Cow position:
               
chrX:11318049-11317811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
160, 66
               

               
Conread position:
               
338-605
               

               
Cow position:
               
chrX:16575042-16575294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
338-680
               

               
Cow position:
               
chrX:33800242-33800577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
346-650
               

               
Cow position:
               
chrX:10829360-10829661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
200, 60
               

               
Conread position:
               
346-652
               

               
Cow position:
               
chrX:36866098-36866401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
346-652
               

               
Cow position:
               
chrX:48003774-48004074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
346-664
               

               
Cow position:
               
chrX:6559518-6559215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
306, 57
               

               
Conread position:
               
347-629
               

               
Cow position:
               
chrX:19965474-19965190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 238
               

               
Conread position:
               
347-671
               

               
Cow position:
               
chrX:45413697-45413365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
107, 40
               

               
Conread position:
               
351-682
               

               
Cow position:
               
chrX:27459788-27460122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
358-652
               

               
Cow position:
               
chrX:13146920-13147212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
276, 43
               

               
Conread position:
               
359-640
               

               
Cow position:
               
chrX:44703132-44702849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
137, 62
               

               
Conread position:
               
359-652
               

               
Cow position:
               
chrX:25036927-25037220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
227, 57
               

               
Conread position:
               
359-652
               

               
Cow position:
               
chrX:27380293-27380588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
359-665
               

               
Cow position:
               
chrX:22115376-22115073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
262, 44
               

               
Conread position:
               
359-684
               

               
Cow position:
               
chrX:2675017-2674697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
361-572
               

               
Cow position:
               
chrX:22915094-22914891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
361-629
               

               
Cow position:
               
chrX:1360028-1360287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
99, 41
               

               
Conread position:
               
361-652
               

               
Cow position:
               
chrX:296337-296620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
361-666
               

               
Cow position:
               
chrX:38321445-38321142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
362-580
               

               
Cow position:
               
chrX:31627038-31626822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
362-622
               

               
Cow position:
               
chrX:169602-169343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
203, 41
               

               
Conread position:
               
363-648
               

               
Cow position:
               
chrX:1088198-1087924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
363-653
               

               
Cow position:
               
chrX:4109134-4109414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
364-673
               

               
Cow position:
               
chrX:6541791-6541488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
364-677
               

               
Cow position:
               
chrX:5134420-5134724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
365-678
               

               
Cow position:
               
chrX:35985764-35986069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
370-683
               

               
Cow position:
               
chrX:11825689-11825389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
376-649
               

               
Cow position:
               
chrX:4645955-4645689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
376-682
               

               
Cow position:
               
chrX:36367985-36367678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
380-652
               

               
Cow position:
               
chrX:36392227-36391960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
383-669
               

               
Cow position:
               
chrX:19394516-19394798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
160, 20
               

               
Conread position:
               
383-678
               

               
Cow position:
               
chrX:6599820-6599520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
387-616
               

               
Cow position:
               
chrX:18964857-18964633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
174, 89
               

               
Conread position:
               
387-664
               

               
Cow position:
               
chrX:48558715-48558986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
387-666
               

               
Cow position:
               
chrX:41941594-41941865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
387-666
               

               
Cow position:
               
chrX:42893885-42894164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
387-672
               

               
Cow position:
               
chrX:47609756-47610041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
387-676
               

               
Cow position:
               
chrX:35431276-35430988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
387-683
               

               
Cow position:
               
chrX:17956663-17956948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
390-579
               

               
Cow position:
               
chrX:23498707-23498522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
390-652
               

               
Cow position:
               
chrX:1397597-1397857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
390-680
               

               
Cow position:
               
chrX:43152186-43151896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
244, 13
               

               
Conread position:
               
390-682
               

               
Cow position:
               
chrX:34540650-34540937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
391-626
               

               
Cow position:
               
chrX:44660616-44660386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
149, 10
               

               
Conread position:
               
391-635
               

               
Cow position:
               
chrX:44736884-44736644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-649
               

               
Cow position:
               
chrX:48574618-48574872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chrX:44090894-44091151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chrX:44202075-44201817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chrX:44238793-44238530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
246, 11
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chrX:44859891-44859634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chrX:45254611-45254354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chrX:46722618-46722361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-675
               

               
Cow position:
               
chrX:44591090-44590814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-678
               

               
Cow position:
               
chrX:45488890-45489170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
239, 11
               

               
Conread position:
               
391-678
               

               
Cow position:
               
chrX:48198675-48198399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-679
               

               
Cow position:
               
chrX:45391742-45391454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
252, 12
               

               
Conread position:
               
391-679
               

               
Cow position:
               
chrX:48473879-48474161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
179, 11
               

               
Conread position:
               
391-679
               

               
Cow position:
               
chrX:48532286-48532571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
391-683
               

               
Cow position:
               
chrX:44837236-44837530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
239, 11
               

               
Conread position:
               
391-683
               

               
Cow position:
               
chrX:45447227-45447512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
172, 11
               

               
Conread position:
               
391-683
               

               
Cow position:
               
chrX:46793774-46793493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-683
               

               
Cow position:
               
chrX:48141792-48142081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
260, 7
               

               
Conread position:
               
391-683
               

               
Cow position:
               
chrX:48194919-48194632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
391-684
               

               
Cow position:
               
chrX:45005403-45005118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-684
               

               
Cow position:
               
chrX:47013431-47013142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 11
               

               
Conread position:
               
391-684
               

               
Cow position:
               
chrX:48570872-48570588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
392-563
               

               
Cow position:
               
chrX:20743575-20743746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
392-617
               

               
Cow position:
               
chrX:32318276-32318494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
84, 184
               

               
Conread position:
               
393-560
               

               
Cow position:
               
chrX:29553258-29553424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
393-652
               

               
Cow position:
               
chrX:45403572-45403317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
162, 10
               

               
Conread position:
               
398-655
               

               
Cow position:
               
chrX:29451565-29451314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
137, 56
               

               
Conread position:
               
403-678
               

               
Cow position:
               
chrX:16836304-16836041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
404-652
               

               
Cow position:
               
chrX:25411892-25412147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
172, 13
               

               
Conread position:
               
404-666
               

               
Cow position:
               
chrX:35275970-35276232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
244, 17
               

               
Conread position:
               
404-681
               

               
Cow position:
               
chrX:42450031-42449754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
407-675
               

               
Cow position:
               
chrX:24170743-24170470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
152, 109
               

               
Conread position:
               
408-678
               

               
Cow position:
               
chrX:32574302-32574575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 187
               

               
Conread position:
               
409-625
               

               
Cow position:
               
chrX:11859548-11859335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
149, 12
               

               
Conread position:
               
410-649
               

               
Cow position:
               
chrX:29478713-29478947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
413-652
               

               
Cow position:
               
chrX:10859321-10859085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
414-684
               

               
Cow position:
               
chrX:43008601-43008872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 168
               

               
Conread position:
               
416-683
               

               
Cow position:
               
chrX:1552964-1553229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
417-595
               

               
Cow position:
               
chrX:42244481-42244303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
417-648
               

               
Cow position:
               
chrX:11653760-11653991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 156
               

               
Conread position:
               
417-653
               

               
Cow position:
               
chrX:48118457-48118222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
417-663
               

               
Cow position:
               
chrX:17292951-17293195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 127
               

               
Conread position:
               
417-664
               

               
Cow position:
               
chrX:13121934-13122184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
119, 170
               

               
Conread position:
               
417-671
               

               
Cow position:
               
chrX:3806678-3806926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
232, 146
               

               
Conread position:
               
417-673
               

               
Cow position:
               
chrX:16409598-16409865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
135, 124
               

               
Conread position:
               
417-676
               

               
Cow position:
               
chrX:43321057-43320800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
234, 164
               

               
Conread position:
               
417-680
               

               
Cow position:
               
chrX:26843274-26843012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 244
               

               
Conread position:
               
417-683
               

               
Cow position:
               
chrX:12219143-12219405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
417-683
               

               
Cow position:
               
chrX:30672400-30672124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
417-684
               

               
Cow position:
               
chrX:8493062-8493324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
417-684
               

               
Cow position:
               
chrX:36109622-36109358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
7, 158
               

               
Conread position:
               
418-648
               

               
Cow position:
               
chrX:27075054-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
418-654
               

               
Cow position:
               
chrX:23335975-23335745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
418-658
               

               
Cow position:
               
chrX:42836178-42836414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
418-669
               

               
Cow position:
               
chrX:39290356-39290600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
200, 125
               

               
Conread position:
               
418-678
               

               
Cow position:
               
chrX:26205451-26205204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
418-683
               

               
Cow position:
               
chrX:26979792-26979534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
133, 88
               

               
Conread position:
               
420-684
               

               
Cow position:
               
chrX:18873271-18872999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 163
               

               
Conread position:
               
421-667
               

               
Cow position:
               
chrX:40108519-40108269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
421-668
               

               
Cow position:
               
chrX:5063251-5063478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
421-671
               

               
Cow position:
               
chrX:34420734-34420983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
422-615
               

               
Cow position:
               
chrX:29733591-29733391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
422-651
               

               
Cow position:
               
chrX:32910105-32910324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
422-668
               

               
Cow position:
               
chrX:7648409-7648170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 113
               

               
Conread position:
               
422-676
               

               
Cow position:
               
chrX:4328182-4327930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
208, 122
               

               
Conread position:
               
422-684
               

               
Cow position:
               
chrX:40336912-40337173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 61
               

               
Conread position:
               
423-673
               

               
Cow position:
               
chrX:44040183-44040427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
227, 52
               

               
Conread position:
               
423-676
               

               
Cow position:
               
chrX:45139930-45139684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
424-654
               

               
Cow position:
               
chrX:17524381-17524153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
424-680
               

               
Cow position:
               
chrX:24336074-24335822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
424-680
               

               
Cow position:
               
chrX:25049279-25049029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
424-682
               

               
Cow position:
               
chrX:39180230-39179975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
424-683
               

               
Cow position:
               
chrX:38967891-38968150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
425-648
               

               
Cow position:
               
chrX:37856356-37856585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
425-652
               

               
Cow position:
               
chrX:43150431-43150659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 126
               

               
Conread position:
               
426-648
               

               
Cow position:
               
chrX:1122538-1122323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
426-666
               

               
Cow position:
               
chrX:19761759-19761991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
428-640
               

               
Cow position:
               
chrX:28836901-28837100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
431-665
               

               
Cow position:
               
chrX:19018821-19018588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
223, 0
               

               
Conread position:
               
431-673
               

               
Cow position:
               
chrX:35285183-35285420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
432-652
               

               
Cow position:
               
chrX:19356480-19356692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
432-670
               

               
Cow position:
               
chrX:35392283-35392058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
219, 51
               

               
Conread position:
               
434-649
               

               
Cow position:
               
chrX:3494809-3494596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
434-672
               

               
Cow position:
               
chrX:40574929-40574692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
217, 43
               

               
Conread position:
               
434-681
               

               
Cow position:
               
chrX:20957251-20957494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
435-586
               

               
Cow position:
               
chrX:47342130-47342280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
435-629
               

               
Cow position:
               
chrX:35620718-35620910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
435-648
               

               
Cow position:
               
chrX:38301823-38302038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
85, 76
               

               
Conread position:
               
435-673
               

               
Cow position:
               
chrX:8759638-8759871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
436-679
               

               
Cow position:
               
chrX:24104854-24105093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
441-652
               

               
Cow position:
               
chrX:28067870-28068079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
441-666
               

               
Cow position:
               
chrX:24425982-24425759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
441-666
               

               
Cow position:
               
chrX:41454934-41454711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 106
               

               
Conread position:
               
441-683
               

               
Cow position:
               
chrX:20345473-20345706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
443-652
               

               
Cow position:
               
chrX:34398762-34398555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
443-656
               

               
Cow position:
               
chrX:42050247-42050036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
208, 10
               

               
Conread position:
               
443-678
               

               
Cow position:
               
chrX:32877353-32877126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
445-667
               

               
Cow position:
               
chrX:51872-51659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
445-671
               

               
Cow position:
               
chrX:16763903-16763686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
445-674
               

               
Cow position:
               
chrX:8642070-8642295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
445-680
               

               
Cow position:
               
chrX:19717545-19717762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
446-666
               

               
Cow position:
               
chrX:31983560-31983336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
449-657
               

               
Cow position:
               
chrX:33020465-33020671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
449-664
               

               
Cow position:
               
chrX:23359083-23358877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
449-684
               

               
Cow position:
               
chrX:2314591-2314355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
202, 132
               

               
Conread position:
               
450-675
               

               
Cow position:
               
chrX:46909844-46910060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
201, 119
               

               
Conread position:
               
450-683
               

               
Cow position:
               
chrX:44995527-44995760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
450-684
               

               
Cow position:
               
chrX:32191144-32190917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
451-652
               

               
Cow position:
               
chrX:40648926-40649130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
451-659
               

               
Cow position:
               
chrX:36922112-36921907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
451-667
               

               
Cow position:
               
chrX:37749953-37749751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
451-672
               

               
Cow position:
               
chrX:11454216-11454424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
197, 63
               

               
Conread position:
               
451-673
               

               
Cow position:
               
chrX:4091954-4092170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
451-683
               

               
Cow position:
               
chrX:47601293-47601060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
453-681
               

               
Cow position:
               
chrX:48186508-48186277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
454-648
               

               
Cow position:
               
chrX:8326937-8327129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
454-652
               

               
Cow position:
               
chrX:48822309-48822114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
454-679
               

               
Cow position:
               
chrX:14925309-14925528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
197, 27
               

               
Conread position:
               
454-682
               

               
Cow position:
               
chrX:17498355-17498580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
455-659
               

               
Cow position:
               
chrX:28850761-28850948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
455-663
               

               
Cow position:
               
chrX:27416126-27416335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
455-678
               

               
Cow position:
               
chrX:1960391-1960169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
196, 126
               

               
Conread position:
               
456-652
               

               
Cow position:
               
chrX:18439031-18439225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
456-664
               

               
Cow position:
               
chrX:35681601-35681806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 107
               

               
Conread position:
               
456-676
               

               
Cow position:
               
chrX:27270410-27270618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 126
               

               
Conread position:
               
457-662
               

               
Cow position:
               
chrX:876806-876609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
457-677
               

               
Cow position:
               
chrX:30958762-30958980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 129
               

               
Conread position:
               
457-684
               

               
Cow position:
               
chrX:15545227-15545007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 27
               

               
Conread position:
               
458-640
               

               
Cow position:
               
chrX:31986537-31986356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
458-652
               

               
Cow position:
               
chrX:42760289-42760481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
458-653
               

               
Cow position:
               
chrX:16556180-16555994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
459-656
               

               
Cow position:
               
chrX:597435-597246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
459-684
               

               
Cow position:
               
chrX:1121329-1121104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
192, 123
               

               
Conread position:
               
459-684
               

               
Cow position:
               
chrX:21839621-21839851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 107
               

               
Conread position:
               
460-652
               

               
Cow position:
               
chrX:18030378-18030188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
461-652
               

               
Cow position:
               
chrX:32215270-32215457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
461-672
               

               
Cow position:
               
chrX:11517940-11517729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
205, 109
               

               
Conread position:
               
462-666
               

               
Cow position:
               
chrX:14951312-14951110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
91, 85
               

               
Conread position:
               
462-666
               

               
Cow position:
               
chrX:19203305-19203102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
188, 120
               

               
Conread position:
               
462-672
               

               
Cow position:
               
chrX:16412241-16412033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
462-672
               

               
Cow position:
               
chrX:35409793-35410000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
462-684
               

               
Cow position:
               
chrX:48495038-48495262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
189, 22
               

               
Conread position:
               
463-652
               

               
Cow position:
               
chrX:46068717-46068536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
463-664
               

               
Cow position:
               
chrX:22864226-22864021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
464-648
               

               
Cow position:
               
chrX:34270604-34270785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
464-652
               

               
Cow position:
               
chrX:5097756-5097566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
465-649
               

               
Cow position:
               
chrX:13347317-13347494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
465-653
               

               
Cow position:
               
chrX:41991090-41990894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
465-664
               

               
Cow position:
               
chrX:6634388-6634587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
185, 110
               

               
Conread position:
               
465-679
               

               
Cow position:
               
chrX:41435505-41435292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 192
               

               
Conread position:
               
465-680
               

               
Cow position:
               
chrX:36468324-36468109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
186, 19
               

               
Conread position:
               
465-680
               

               
Cow position:
               
chrX:44225687-44225472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
192, 120
               

               
Conread position:
               
466-666
               

               
Cow position:
               
chrX:1101602-1101793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
185, 87
               

               
Conread position:
               
467-649
               

               
Cow position:
               
chrX:37867477-37867658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
467-684
               

               
Cow position:
               
chrX:10415207-10414994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
471-652
               

               
Cow position:
               
chrX:37867303-37867482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
471-667
               

               
Cow position:
               
chrX:4602888-4602694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
184, 30
               

               
Conread position:
               
471-673
               

               
Cow position:
               
chrX:36351708-36351905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
471-681
               

               
Cow position:
               
chrX:47100547-47100337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
118, 86
               

               
Conread position:
               
477-658
               

               
Cow position:
               
chrX:6480540-6480361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
483-665
               

               
Cow position:
               
chrX:16801201-16801026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
483-665
               

               
Cow position:
               
chrX:28106909-28107087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
483-675
               

               
Cow position:
               
chrX:41010960-41011141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
484-640
               

               
Cow position:
               
chrX:10237850-10237697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
484-652
               

               
Cow position:
               
chrX:1396179-1396349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
150, 98
               

               
Conread position:
               
484-655
               

               
Cow position:
               
chrX:22552916-22552748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
484-672
               

               
Cow position:
               
chrX:26882017-26881829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
169, 83
               

               
Conread position:
               
484-674
               

               
Cow position:
               
chrX:41199287-41199471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
484-679
               

               
Cow position:
               
chrX:1938077-1938267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
485-663
               

               
Cow position:
               
chrX:9451409-9451580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
485-672
               

               
Cow position:
               
chrX:4559797-4559983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
165, 96
               

               
Conread position:
               
489-665
               

               
Cow position:
               
chrX:48574289-48574113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
490-675
               

               
Cow position:
               
chrX:11674178-11674362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 94
               

               
Conread position:
               
491-640
               

               
Cow position:
               
chrX:11813143-11813290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
491-659
               

               
Cow position:
               
chrX:33678403-33678235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 93
               

               
Conread position:
               
491-665
               

               
Cow position:
               
chrX:30789461-30789288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
491-676
               

               
Cow position:
               
chrX:19000196-19000382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
166, 74
               

               
Conread position:
               
493-666
               

               
Cow position:
               
chrX:16770136-16770307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
493-672
               

               
Cow position:
               
chrX:34194009-34193832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
496-659
               

               
Cow position:
               
chrX:3542931-3543100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
496-671
               

               
Cow position:
               
chrX:42506874-42506699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
67, 88
               

               
Conread position:
               
498-674
               

               
Cow position:
               
chrX:26720605-26720441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
501-684
               

               
Cow position:
               
chrX:17929081-17929257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
508-652
               

               
Cow position:
               
chrX:1996365-1996223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
508-672
               

               
Cow position:
               
chrX:42314805-42314641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
137, 79
               

               
Conread position:
               
509-652
               

               
Cow position:
               
chrX:11670774-11670915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
509-666
               

               
Cow position:
               
chrX:37717809-37717963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
509-674
               

               
Cow position:
               
chrX:21409189-21409027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
510-664
               

               
Cow position:
               
chrX:39887125-39886972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
513-648
               

               
Cow position:
               
chrX:10479841-10479974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
516-669
               

               
Cow position:
               
chrX:42159036-42159185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
519-678
               

               
Cow position:
               
chrX:36962848-36963006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
526-674
               

               
Cow position:
               
chrX:41194010-41194153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
527-682
               

               
Cow position:
               
chrX:6855965-6856117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
528-671
               

               
Cow position:
               
chrX:42220595-42220454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
536-663
               

               
Cow position:
               
chrX:19162016-19161892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
536-682
               

               
Cow position:
               
chrX:783559-783705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
539-677
               

               
Cow position:
               
chrX:18196116-18196254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
539-678
               

               
Cow position:
               
chrX:32590288-32590154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               
Show alignments to all cow chromosomes.