Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-380 |
| Cow position: | chr10:9031521-9031891 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 303, 87 |
| Conread position: | 1-460 |
| Cow position: | chr10:9031437-9031887 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 1-479 |
| Cow position: | chr10:8996488-8996001 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 1-514 |
| Cow position: | chr10:8996572-8996050 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 1-514 |
| Cow position: | chr10:8996656-8996134 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-516 |
| Cow position: | chr10:8996740-8996216 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 41-512 |
| Cow position: | chr10:9010512-9010032 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 73-346 |
| Cow position: | chr10:9010135-9009862 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 73-471 |
| Cow position: | chr10:9031266-9031664 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 73-511 |
| Cow position: | chr10:8996743-8996305 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 78-512 |
| Cow position: | chr10:21939222-21938788 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 79-524 |
| Cow position: | chr10:21939137-21938694 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 111-514 |
| Cow position: | chr10:8996873-8996470 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 117-516 |
| Cow position: | chr10:8996783-8996384 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-517 |
| Cow position: | chr10:9010511-9010111 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 117-524 |
| Cow position: | chr10:9010259-9009852 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 122-504 |
| Cow position: | chr10:9031231-9031613 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 74 |
| Conread position: | 129-420 |
| Cow position: | chr10:21938919-21938631 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 130 |
| Conread position: | 162-514 |
| Cow position: | chr10:9010550-9010198 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 162-524 |
| Cow position: | chr10:21939222-21938860 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 183-513 |
| Cow position: | chr10:8996885-8996555 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 206-511 |
| Cow position: | chr10:9031231-9031536 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-515 |
| Cow position: | chr10:8996895-8996637 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-521 |
| Cow position: | chr10:9031613-9031865 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 303-514 |
| Cow position: | chr10:9031244-9031455 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 66 |
Show alignments to all cow chromosomes.