Cow genome map

Conread name: Ss1.1-raor029_h22.5

Conread position: 42-465
Cow position: chr13:56317409-56317833 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 268
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 41, 70

Conread position: 42-467
Cow position: chr13:39984466-39984900 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 274
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 79

Conread position: 42-515
Cow position: chr13:39984382-39984864 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 79

Conread position: 42-526
Cow position: chr13:56333778-56334280 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 318
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 30, 69

Conread position: 54-420
Cow position: chr13:56333958-56334341 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 246
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 151

Conread position: 71-524
Cow position: chr13:56292339-56291897 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 27

Conread position: 73-469
Cow position: chr13:56317365-56317753 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 251
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 24

Conread position: 73-478
Cow position: chr13:56292177-56291772 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 17

Conread position: 73-513
Cow position: chr13:39984002-39984442 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 39

Conread position: 74-469
Cow position: chr13:29183637-29183243 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 248
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 61, 111

Conread position: 74-526
Cow position: chr13:56292426-56291979 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 293
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 85, 120

Conread position: 75-454
Cow position: chr13:22125537-22125916 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 234
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 21

Conread position: 75-476
Cow position: chr13:22124865-22125268 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 238
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 232, 225

Conread position: 75-501
Cow position: chr13:39930752-39931176 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 279
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 11, 22

Conread position: 75-512
Cow position: chr13:22125201-22125638 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 263
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 22

Conread position: 75-512
Cow position: chr13:24162927-24163364 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 262
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 22

Conread position: 75-528
Cow position: chr13:39930584-39931037 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 102

Conread position: 75-528
Cow position: chr13:39930668-39931121 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 22

Conread position: 78-503
Cow position: chr13:24162510-24162935 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 261
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 11, 24

Conread position: 78-513
Cow position: chr13:39984259-39984694 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 34

Conread position: 81-524
Cow position: chr13:56292834-56292396 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 269
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 286, 66

Conread position: 91-511
Cow position: chr13:56333500-56333920 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 250
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 83, 96

Conread position: 96-482
Cow position: chr13:56333674-56334059 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 254
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 155, 21

Conread position: 111-511
Cow position: chr13:56333604-56334004 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 256
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 81, 91

Conread position: 114-516
Cow position: chr13:39984127-39984529 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 67

Conread position: 115-513
Cow position: chr13:39984380-39984778 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 148

Conread position: 115-515
Cow position: chr13:39983960-39984360 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 257
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 116-315
Cow position: chr13:56334122-56334321 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 116-386
Cow position: chr13:39984633-39984903 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 170, 149

Conread position: 116-467
Cow position: chr13:56333945-56334305 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 222
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 117-526
Cow position: chr13:24162465-24162874 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 251
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 85, 66

Conread position: 128-515
Cow position: chr13:39983805-39984192 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 245
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 122, 129

Conread position: 129-523
Cow position: chr13:24163065-24163459 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 233
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 136-514
Cow position: chr13:56292198-56291822 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 43

Conread position: 141-516
Cow position: chr13:39984238-39984613 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 109, 116

Conread position: 141-526
Cow position: chr13:22124763-22125148 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 238
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 61

Conread position: 201-429
Cow position: chr13:56317930-56318158 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 151
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 71

Conread position: 201-503
Cow position: chr13:22124907-22125209 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 191
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 190, 183

Conread position: 235-509
Cow position: chr13:56292848-56292579 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 178
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 284-514
Cow position: chr13:56317929-56318159 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 152, 134

Conread position: 287-512
Cow position: chr13:56292879-56292660 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.