Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 42-465 |
| Cow position: | chr13:56317409-56317833 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 42-467 |
| Cow position: | chr13:39984466-39984900 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 42-515 |
| Cow position: | chr13:39984382-39984864 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 42-526 |
| Cow position: | chr13:56333778-56334280 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 54-420 |
| Cow position: | chr13:56333958-56334341 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 151 |
| Conread position: | 71-524 |
| Cow position: | chr13:56292339-56291897 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 73-469 |
| Cow position: | chr13:56317365-56317753 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 73-478 |
| Cow position: | chr13:56292177-56291772 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 17 |
| Conread position: | 73-513 |
| Cow position: | chr13:39984002-39984442 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 74-469 |
| Cow position: | chr13:29183637-29183243 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 61, 111 |
| Conread position: | 74-526 |
| Cow position: | chr13:56292426-56291979 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 75-454 |
| Cow position: | chr13:22125537-22125916 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 75-476 |
| Cow position: | chr13:22124865-22125268 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 232, 225 |
| Conread position: | 75-501 |
| Cow position: | chr13:39930752-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 75-512 |
| Cow position: | chr13:22125201-22125638 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 75-512 |
| Cow position: | chr13:24162927-24163364 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 75-528 |
| Cow position: | chr13:39930584-39931037 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 102 |
| Conread position: | 75-528 |
| Cow position: | chr13:39930668-39931121 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 78-503 |
| Cow position: | chr13:24162510-24162935 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 78-513 |
| Cow position: | chr13:39984259-39984694 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 81-524 |
| Cow position: | chr13:56292834-56292396 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 286, 66 |
| Conread position: | 91-511 |
| Cow position: | chr13:56333500-56333920 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 83, 96 |
| Conread position: | 96-482 |
| Cow position: | chr13:56333674-56334059 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 155, 21 |
| Conread position: | 111-511 |
| Cow position: | chr13:56333604-56334004 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 81, 91 |
| Conread position: | 114-516 |
| Cow position: | chr13:39984127-39984529 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 115-513 |
| Cow position: | chr13:39984380-39984778 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 148 |
| Conread position: | 115-515 |
| Cow position: | chr13:39983960-39984360 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-315 |
| Cow position: | chr13:56334122-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-386 |
| Cow position: | chr13:39984633-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 170, 149 |
| Conread position: | 116-467 |
| Cow position: | chr13:56333945-56334305 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 117-526 |
| Cow position: | chr13:24162465-24162874 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 85, 66 |
| Conread position: | 128-515 |
| Cow position: | chr13:39983805-39984192 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 129-523 |
| Cow position: | chr13:24163065-24163459 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 136-514 |
| Cow position: | chr13:56292198-56291822 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 43 |
| Conread position: | 141-516 |
| Cow position: | chr13:39984238-39984613 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 109, 116 |
| Conread position: | 141-526 |
| Cow position: | chr13:22124763-22125148 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 201-429 |
| Cow position: | chr13:56317930-56318158 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 201-503 |
| Cow position: | chr13:22124907-22125209 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 190, 183 |
| Conread position: | 235-509 |
| Cow position: | chr13:56292848-56292579 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 284-514 |
| Cow position: | chr13:56317929-56318159 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 152, 134 |
| Conread position: | 287-512 |
| Cow position: | chr13:56292879-56292660 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.