Cow genome map

Conread name: Ss1.1-raor029_h22.5

Conread position: 1-348
Cow position:
Alignm length: 360
Alignm identity: 236
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 82, 108

Conread position: 1-475
Cow position:
Alignm length: 485
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 126

Conread position: 1-511
Cow position:
Alignm length: 524
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 21

Conread position: 1-513
Cow position:
Alignm length: 525
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 42

Conread position: 1-514
Cow position:
Alignm length: 528
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 35

Conread position: 1-514
Cow position:
Alignm length: 526
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 126

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 106

Conread position: 2-430
Cow position:
Alignm length: 442
Alignm identity: 285
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 21

Conread position: 2-515
Cow position:
Alignm length: 524
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 119

Conread position: 3-409
Cow position:
Alignm length: 420
Alignm identity: 270
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 40

Conread position: 3-466
Cow position:
Alignm length: 475
Alignm identity: 294
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 69, 119

Conread position: 3-475
Cow position:
Alignm length: 488
Alignm identity: 305
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 71, 103

Conread position: 3-511
Cow position:
Alignm length: 520
Alignm identity: 323
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 80, 106

Conread position: 3-512
Cow position:
Alignm length: 521
Alignm identity: 306
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 102

Conread position: 3-514
Cow position:
Alignm length: 521
Alignm identity: 326
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 77, 129

Conread position: 3-514
Cow position:
Alignm length: 527
Alignm identity: 332
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 71, 99

Conread position: 3-518
Cow position:
Alignm length: 526
Alignm identity: 322
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 78, 398

Conread position: 3-525
Cow position:
Alignm length: 539
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 136

Conread position: 29-528
Cow position:
Alignm length: 513
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 98

Conread position: 42-431
Cow position:
Alignm length: 402
Alignm identity: 254
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 33, 64

Conread position: 42-511
Cow position:
Alignm length: 480
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 65

Conread position: 42-511
Cow position:
Alignm length: 482
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 79

Conread position: 42-512
Cow position:
Alignm length: 479
Alignm identity: 291
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 45, 400

Conread position: 42-515
Cow position:
Alignm length: 486
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 68

Conread position: 42-515
Cow position:
Alignm length: 485
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 65

Conread position: 42-515
Cow position:
Alignm length: 486
Alignm identity: 312
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 65

Conread position: 42-516
Cow position:
Alignm length: 485
Alignm identity: 309
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 42, 114

Conread position: 42-527
Cow position:
Alignm length: 496
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 417

Conread position: 42-528
Cow position:
Alignm length: 500
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 81

Conread position: 48-513
Cow position:
Alignm length: 472
Alignm identity: 295
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 326

Conread position: 73-469
Cow position:
Alignm length: 398
Alignm identity: 255
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 200, 191

Conread position: 73-475
Cow position:
Alignm length: 406
Alignm identity: 261
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 32, 27

Conread position: 73-514
Cow position:
Alignm length: 444
Alignm identity: 276
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 31

Conread position: 73-514
Cow position:
Alignm length: 443
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 73-515
Cow position:
Alignm length: 444
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 39

Conread position: 73-515
Cow position:
Alignm length: 447
Alignm identity: 268
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 35

Conread position: 73-524
Cow position:
Alignm length: 455
Alignm identity: 287
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 30, 45

Conread position: 74-458
Cow position:
Alignm length: 386
Alignm identity: 242
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 16, 23

Conread position: 74-466
Cow position:
Alignm length: 400
Alignm identity: 255
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 16, 23

Conread position: 74-513
Cow position:
Alignm length: 442
Alignm identity: 278
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 16, 23

Conread position: 74-514
Cow position:
Alignm length: 443
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 30

Conread position: 74-514
Cow position:
Alignm length: 442
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 74-514
Cow position:
Alignm length: 443
Alignm identity: 280
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 29

Conread position: 74-515
Cow position:
Alignm length: 443
Alignm identity: 269
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 23

Conread position: 74-519
Cow position:
Alignm length: 450
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 37

Conread position: 74-528
Cow position:
Alignm length: 460
Alignm identity: 290
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 14, 44

Conread position: 75-348
Cow position:
Alignm length: 274
Alignm identity: 173
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 75-394
Cow position:
Alignm length: 320
Alignm identity: 193
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 75-511
Cow position:
Alignm length: 439
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 75-511
Cow position:
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 37

Conread position: 75-511
Cow position:
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 75-512
Cow position:
Alignm length: 440
Alignm identity: 263
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 14, 22

Conread position: 75-512
Cow position:
Alignm length: 439
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 194

Conread position: 75-513
Cow position:
Alignm length: 440
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 22

Conread position: 75-514
Cow position:
Alignm length: 441
Alignm identity: 269
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 21

Conread position: 75-514
Cow position:
Alignm length: 441
Alignm identity: 279
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 391, 383

Conread position: 75-515
Cow position:
Alignm length: 445
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 117

Conread position: 75-515
Cow position:
Alignm length: 442
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 189

Conread position: 75-515
Cow position:
Alignm length: 443
Alignm identity: 282
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 43

Conread position: 75-515
Cow position:
Alignm length: 444
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 22

Conread position: 75-515
Cow position:
Alignm length: 444
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 22

Conread position: 75-516
Cow position:
Alignm length: 444
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 38

Conread position: 75-523
Cow position:
Alignm length: 453
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 43

Conread position: 75-524
Cow position:
Alignm length: 453
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 108

Conread position: 75-524
Cow position:
Alignm length: 459
Alignm identity: 290
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 13, 29

Conread position: 75-528
Cow position:
Alignm length: 457
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 44

Conread position: 75-528
Cow position:
Alignm length: 457
Alignm identity: 284
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 96, 102

Conread position: 75-528
Cow position:
Alignm length: 459
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 43

Conread position: 75-528
Cow position:
Alignm length: 458
Alignm identity: 288
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 14, 22

Conread position: 76-514
Cow position:
Alignm length: 442
Alignm identity: 284
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 23, 42

Conread position: 76-528
Cow position:
Alignm length: 455
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 20

Conread position: 77-512
Cow position:
Alignm length: 439
Alignm identity: 264
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 20

Conread position: 77-517
Cow position:
Alignm length: 446
Alignm identity: 284
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 124, 118

Conread position: 77-528
Cow position:
Alignm length: 457
Alignm identity: 280
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 22

Conread position: 78-511
Cow position:
Alignm length: 438
Alignm identity: 269
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 11, 26

Conread position: 78-513
Cow position:
Alignm length: 438
Alignm identity: 260
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 26, 19

Conread position: 78-517
Cow position:
Alignm length: 447
Alignm identity: 289
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 11, 19

Conread position: 84-514
Cow position:
Alignm length: 433
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 103

Conread position: 84-516
Cow position:
Alignm length: 435
Alignm identity: 269
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 25, 34

Conread position: 109-511
Cow position:
Alignm length: 404
Alignm identity: 251
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 149, 145

Conread position: 109-512
Cow position:
Alignm length: 404
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 109-513
Cow position:
Alignm length: 406
Alignm identity: 256
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 149, 145

Conread position: 109-526
Cow position:
Alignm length: 418
Alignm identity: 265
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 111-511
Cow position:
Alignm length: 402
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 150

Conread position: 114-514
Cow position:
Alignm length: 402
Alignm identity: 254
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 354, 359

Conread position: 114-514
Cow position:
Alignm length: 403
Alignm identity: 253
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 158, 152

Conread position: 114-518
Cow position:
Alignm length: 406
Alignm identity: 240
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 170, 153

Conread position: 115-525
Cow position:
Alignm length: 412
Alignm identity: 255
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 160, 154

Conread position: 117-513
Cow position:
Alignm length: 397
Alignm identity: 245
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 117-514
Cow position:
Alignm length: 398
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 117-515
Cow position:
Alignm length: 399
Alignm identity: 239
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 117-527
Cow position:
Alignm length: 411
Alignm identity: 259
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 120-514
Cow position:
Alignm length: 395
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 123-515
Cow position:
Alignm length: 395
Alignm identity: 257
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 80, 73

Conread position: 123-515
Cow position:
Alignm length: 394
Alignm identity: 253
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 129, 140

Conread position: 123-528
Cow position:
Alignm length: 406
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 128-512
Cow position:
Alignm length: 387
Alignm identity: 237
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 338, 328

Conread position: 128-515
Cow position:
Alignm length: 390
Alignm identity: 247
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 124, 47

Conread position: 129-373
Cow position:
Alignm length: 248
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 20

Conread position: 129-514
Cow position:
Alignm length: 388
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 333

Conread position: 129-515
Cow position:
Alignm length: 387
Alignm identity: 228
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 134-514
Cow position:
Alignm length: 381
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 135-514
Cow position:
Alignm length: 381
Alignm identity: 247
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 142, 134

Conread position: 135-523
Cow position:
Alignm length: 390
Alignm identity: 233
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 300, 315

Conread position: 135-524
Cow position:
Alignm length: 391
Alignm identity: 249
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 37, 44

Conread position: 137-528
Cow position:
Alignm length: 393
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 231

Conread position: 141-514
Cow position:
Alignm length: 374
Alignm identity: 241
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 141-526
Cow position:
Alignm length: 389
Alignm identity: 241
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 126

Conread position: 141-528
Cow position:
Alignm length: 388
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 157-511
Cow position:
Alignm length: 355
Alignm identity: 226
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 159-524
Cow position:
Alignm length: 368
Alignm identity: 234
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 202, 191

Conread position: 188-514
Cow position:
Alignm length: 328
Alignm identity: 215
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 62, 87

Conread position: 188-515
Cow position:
Alignm length: 330
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 90

Conread position: 207-483
Cow position:
Alignm length: 280
Alignm identity: 187
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 45, 52

Conread position: 209-525
Cow position:
Alignm length: 319
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 233, 241

Conread position: 210-524
Cow position:
Alignm length: 320
Alignm identity: 205
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 53

Conread position: 211-527
Cow position:
Alignm length: 318
Alignm identity: 201
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 229, 48

Conread position: 212-514
Cow position:
Alignm length: 303
Alignm identity: 183
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 271-525
Cow position:
Alignm length: 257
Alignm identity: 171
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 174, 158

Conread position: 274-515
Cow position:
Alignm length: 242
Alignm identity: 161
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 275-511
Cow position:
Alignm length: 237
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.