Cow genome map


           Conread name:
           Ss1.1-raor029_h22.5
        

               Conread position:
               1-331
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               32, 37
               

               Conread position:
               1-460
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 121
               

               Conread position:
               1-508
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 104
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 42
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 105
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 37
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 112
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 22
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 344
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 42
               

               Conread position:
               1-517
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 105
               

               Conread position:
               1-523
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 192
               

               Conread position:
               1-524
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 105
               

               Conread position:
               1-524
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               1-528
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               348
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               71, 119
               

               Conread position:
               2-479
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               313
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               48, 53
               

               Conread position:
               3-351
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               72, 119
               

               Conread position:
               3-395
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 132
               

               Conread position:
               3-511
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 282
               

               Conread position:
               3-511
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 112
               

               Conread position:
               3-514
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 115
               

               Conread position:
               3-514
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 270
               

               Conread position:
               3-514
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 118
               

               Conread position:
               3-524
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 40
               

               Conread position:
               3-524
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 41
               

               Conread position:
               8-513
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 34
               

               Conread position:
               37-512
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 69
               

               Conread position:
               42-392
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               236
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               41, 217
               

               Conread position:
               42-397
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               39, 64
               

               Conread position:
               42-475
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 66
               

               Conread position:
               42-480
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 29
               

               Conread position:
               42-513
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               42-514
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 50
               

               Conread position:
               42-515
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 263
               

               Conread position:
               42-527
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               47-514
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 394
               

               Conread position:
               73-373
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               17, 39
               

               Conread position:
               73-447
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               15, 25
               

               Conread position:
               73-477
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 202
               

               Conread position:
               73-513
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               73-514
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 27
               

               Conread position:
               73-514
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               73-515
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 122
               

               Conread position:
               73-524
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               74-514
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 38
               

               Conread position:
               74-514
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               74-525
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               191, 204
               

               Conread position:
               74-528
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               75-511
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 182
               

               Conread position:
               75-511
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               75-511
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 21
               

               Conread position:
               75-512
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 17
               

               Conread position:
               75-513
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               75-513
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 21
               

               Conread position:
               75-514
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 22
               

               Conread position:
               75-514
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 193
               

               Conread position:
               75-515
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 23
               

               Conread position:
               75-515
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 37
               

               Conread position:
               75-515
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 67
               

               Conread position:
               75-516
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 29
               

               Conread position:
               75-516
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 17
               

               Conread position:
               75-516
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 193
               

               Conread position:
               77-528
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 21
               

               Conread position:
               78-528
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               109-515
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               114-514
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               114-518
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               116-473
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               117-527
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               122-524
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               258
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               80, 75
               

               Conread position:
               123-514
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 175
               

               Conread position:
               123-514
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               260
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               156, 118
               

               Conread position:
               126-511
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 15
               

               Conread position:
               128-515
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               135-514
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               245
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-526
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               147-514
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               148-497
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               22, 32
               

               Conread position:
               152-516
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 44
               

               Conread position:
               159-513
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               114, 60
               

               Conread position:
               201-515
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               211
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               206-514
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               46, 53
               

               Conread position:
               217-513
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 34
               

               Conread position:
               219-478
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               219-524
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               221-514
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               301-528
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               303-528
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               136, 131
               
Show alignments to all cow chromosomes.