Cow genome map

Conread name: Ss1.1-raor029_h22.5

Conread position: 1-331
Cow position: chr19:23597390-23597730 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 230
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 37

Conread position: 1-460
Cow position: chr19:14940601-14941069 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 121

Conread position: 1-508
Cow position: chr19:23649663-23650179 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 104

Conread position: 1-511
Cow position: chr19:14940013-14940532 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-513
Cow position: chr19:23613709-23614230 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 42

Conread position: 1-513
Cow position: chr19:23649747-23650268 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 105

Conread position: 1-513
Cow position: chr19:23649915-23650436 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 37

Conread position: 1-514
Cow position: chr19:14940265-14940787 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 112

Conread position: 1-514
Cow position: chr19:14960366-14959846 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 22

Conread position: 1-514
Cow position: chr19:23614297-23614819 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 344

Conread position: 1-514
Cow position: chr19:23614549-23615071 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 42

Conread position: 1-517
Cow position: chr19:14960282-14959761 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 105

Conread position: 1-523
Cow position: chr19:14940349-14940880 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 192

Conread position: 1-524
Cow position: chr19:14940181-14940713 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 105

Conread position: 1-524
Cow position: chr19:23614045-23614577 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 1-528
Cow position: chr19:14959544-14959023 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 348
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 71, 119

Conread position: 2-479
Cow position: chr19:23650000-23650486 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 313
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 53

Conread position: 3-351
Cow position: chr19:14948356-14947999 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 227
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 72, 119

Conread position: 3-395
Cow position: chr19:23614719-23615118 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 132

Conread position: 3-511
Cow position: chr19:23613627-23614144 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 282

Conread position: 3-511
Cow position: chr19:23613879-23614396 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 112

Conread position: 3-514
Cow position: chr19:14940435-14940955 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 115

Conread position: 3-514
Cow position: chr19:20635522-20635002 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 270

Conread position: 3-514
Cow position: chr19:23614467-23614987 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 118

Conread position: 3-524
Cow position: chr19:23613795-23614325 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 40

Conread position: 3-524
Cow position: chr19:43570355-43569835 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 41

Conread position: 8-513
Cow position: chr19:23597061-23597575 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 34

Conread position: 37-512
Cow position: chr19:23649447-23649931 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 69

Conread position: 42-392
Cow position: chr19:14959176-14958823 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 236
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 41, 217

Conread position: 42-397
Cow position: chr19:23597347-23597711 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 241
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 39, 64

Conread position: 42-475
Cow position: chr19:23597263-23597705 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 66

Conread position: 42-480
Cow position: chr19:14959741-14959308 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 29

Conread position: 42-513
Cow position: chr19:20677513-20677993 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 42-514
Cow position: chr19:14959335-14958869 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 50

Conread position: 42-515
Cow position: chr19:20678101-20678583 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 263

Conread position: 42-527
Cow position: chr19:23613582-23614076 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 47-514
Cow position: chr19:20635646-20635170 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 394

Conread position: 73-373
Cow position: chr19:43569950-43569654 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 17, 39

Conread position: 73-447
Cow position: chr19:14916069-14916438 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 242
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 25

Conread position: 73-477
Cow position: chr19:23614714-23615118 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 202

Conread position: 73-513
Cow position: chr19:23613454-23613894 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 23

Conread position: 73-514
Cow position: chr19:23614294-23614735 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 27

Conread position: 73-514
Cow position: chr19:23649576-23650017 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 73-515
Cow position: chr19:14940598-14941040 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 122

Conread position: 73-524
Cow position: chr19:23614210-23614661 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-514
Cow position: chr19:14948443-14948004 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 38

Conread position: 74-514
Cow position: chr19:23614043-23614483 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-525
Cow position: chr19:43570117-43569670 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 292
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 191, 204

Conread position: 74-528
Cow position: chr19:23613539-23613993 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 75-511
Cow position: chr19:14940180-14940616 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 182

Conread position: 75-511
Cow position: chr19:20678059-20678495 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 20

Conread position: 75-511
Cow position: chr19:20678227-20678663 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 21

Conread position: 75-512
Cow position: chr19:20677639-20678076 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 17

Conread position: 75-513
Cow position: chr19:14940012-14940450 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 75-513
Cow position: chr19:20677891-20678329 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 21

Conread position: 75-514
Cow position: chr19:23649662-23650101 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 75-514
Cow position: chr19:23649914-23650353 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 193

Conread position: 75-515
Cow position: chr19:14960367-14959929 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 75-515
Cow position: chr19:20677807-20678247 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 37

Conread position: 75-515
Cow position: chr19:23596972-23597409 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 67

Conread position: 75-516
Cow position: chr19:20677471-20677912 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 29

Conread position: 75-516
Cow position: chr19:20678311-20678749 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 75-516
Cow position: chr19:23597221-23597663 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 193

Conread position: 77-528
Cow position: chr19:23613374-23613825 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 78-528
Cow position: chr19:14960448-14960000 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 19

Conread position: 109-515
Cow position: chr19:23649444-23649850 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 114-514
Cow position: chr19:14939968-14940367 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 114-518
Cow position: chr19:20677762-20678166 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 116-473
Cow position: chr19:14959177-14958826 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 59, 0

Conread position: 117-527
Cow position: chr19:23597095-23597505 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 122-524
Cow position: chr19:14959582-14959189 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 258
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 80, 75

Conread position: 123-514
Cow position: chr19:20635477-20635086 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 175

Conread position: 123-514
Cow position: chr19:43570394-43570013 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 260
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 156, 118

Conread position: 126-511
Cow position: chr19:14915953-14916335 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 15

Conread position: 128-515
Cow position: chr19:20677440-20677827 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 135-514
Cow position: chr19:23649302-23649681 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 245
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 141-526
Cow position: chr19:23613354-23613739 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 147-514
Cow position: chr19:23649398-23649765 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 148-497
Cow position: chr19:43570615-43570271 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 220
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 32

Conread position: 152-516
Cow position: chr19:20635700-20635336 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 44

Conread position: 159-513
Cow position: chr19:14959711-14959359 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 229
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 114, 60

Conread position: 201-515
Cow position: chr19:14948484-14948171 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 81, 0

Conread position: 206-514
Cow position: chr19:23649289-23649597 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 53

Conread position: 217-513
Cow position: chr19:14960477-14960181 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 219-478
Cow position: chr19:20636116-20635860 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 169
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 219-524
Cow position: chr19:14939988-14940293 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 221-514
Cow position: chr19:23613350-23613643 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 301-528
Cow position: chr19:14939985-14940213 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 303-528
Cow position: chr19:14960475-14960250 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 136, 131

Show alignments to all cow chromosomes.