Cow genome map


           Conread name:
           Ss1.1-raor029_h22.5
        

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 37
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               320
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               36, 393
               

               Conread position:
               1-524
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 37
               

               Conread position:
               1-524
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 146
               

               Conread position:
               1-526
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 106
               

               Conread position:
               2-524
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 117
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 118
               

               Conread position:
               3-524
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 41
               

               Conread position:
               31-387
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               51, 75
               

               Conread position:
               53-524
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 103
               

               Conread position:
               73-461
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               73-511
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               202, 181
               

               Conread position:
               73-514
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 24
               

               Conread position:
               73-522
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 61
               

               Conread position:
               73-524
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               291
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               29, 23
               

               Conread position:
               73-524
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               288
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               31, 22
               

               Conread position:
               74-502
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               13, 23
               

               Conread position:
               74-514
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               273
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               12, 22
               

               Conread position:
               74-522
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               75-502
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               264
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               75-511
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               278
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               13, 22
               

               Conread position:
               75-513
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               287
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               14, 23
               

               Conread position:
               75-514
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 22
               

               Conread position:
               75-516
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 36
               

               Conread position:
               77-516
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               282
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               12, 34
               

               Conread position:
               78-503
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               257
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               62, 55
               

               Conread position:
               78-528
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 187
               

               Conread position:
               105-520
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 331
               

               Conread position:
               108-480
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               248
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               101, 54
               

               Conread position:
               108-514
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               65, 85
               

               Conread position:
               109-508
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               187, 154
               

               Conread position:
               116-512
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               253
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               192, 186
               

               Conread position:
               117-502
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               51, 76
               

               Conread position:
               120-511
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 188
               

               Conread position:
               122-526
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               258
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               80, 76
               

               Conread position:
               129-523
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               311, 303
               

               Conread position:
               131-521
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               254
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               333, 73
               

               Conread position:
               141-511
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               143-523
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               237
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               90, 74
               

               Conread position:
               149-524
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               240
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               251, 0
               

               Conread position:
               207-513
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               45, 68
               

               Conread position:
               236-505
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               123, 114
               

               Conread position:
               317-506
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               123, 117
               
Show alignments to all cow chromosomes.