Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-511 |
| Cow position: | chr2:78755775-78756295 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 1-514 |
| Cow position: | chr2:86465541-86466063 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 320 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 36, 393 |
| Conread position: | 1-524 |
| Cow position: | chr2:78754451-78754967 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 1-524 |
| Cow position: | chr2:78755358-78755887 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 146 |
| Conread position: | 1-526 |
| Cow position: | chr2:78754855-78755388 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 106 |
| Conread position: | 2-524 |
| Cow position: | chr2:78755443-78755971 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 117 |
| Conread position: | 3-515 |
| Cow position: | chr2:82799467-82799988 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 118 |
| Conread position: | 3-524 |
| Cow position: | chr2:78755025-78755553 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 31-387 |
| Cow position: | chr2:82800083-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 53-524 |
| Cow position: | chr2:78754587-78755051 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 73-461 |
| Cow position: | chr2:82800050-82800438 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 73-511 |
| Cow position: | chr2:86465202-86465640 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 202, 181 |
| Conread position: | 73-514 |
| Cow position: | chr2:82799966-82800407 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 73-522 |
| Cow position: | chr2:78755606-78756054 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 61 |
| Conread position: | 73-524 |
| Cow position: | chr2:78754117-78754563 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 73-524 |
| Cow position: | chr2:82799630-82800081 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 74-502 |
| Cow position: | chr2:5874657-5874229 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 74-514 |
| Cow position: | chr2:5875161-5874721 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 74-522 |
| Cow position: | chr2:78754853-78755301 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-502 |
| Cow position: | chr2:5874824-5874397 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 75-511 |
| Cow position: | chr2:82799800-82800237 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 278 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 75-513 |
| Cow position: | chr2:82799884-82800322 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 75-514 |
| Cow position: | chr2:82799716-82800155 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 75-516 |
| Cow position: | chr2:86465372-86465813 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 77-516 |
| Cow position: | chr2:78754286-78754722 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 78-503 |
| Cow position: | chr2:5874905-5874480 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 78-528 |
| Cow position: | chr2:82799467-82799917 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 187 |
| Conread position: | 105-520 |
| Cow position: | chr2:78754800-78755215 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 331 |
| Conread position: | 108-480 |
| Cow position: | chr2:78756060-78756428 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 101, 54 |
| Conread position: | 108-514 |
| Cow position: | chr2:5874959-5874553 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 109-508 |
| Cow position: | chr2:86464986-86465385 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 187, 154 |
| Conread position: | 116-512 |
| Cow position: | chr2:5875035-5874638 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 192, 186 |
| Conread position: | 117-502 |
| Cow position: | chr2:5874530-5874145 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 120-511 |
| Cow position: | chr2:78754245-78754634 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 188 |
| Conread position: | 122-526 |
| Cow position: | chr2:86465167-86465571 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 80, 76 |
| Conread position: | 129-523 |
| Cow position: | chr2:86465762-86466156 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 311, 303 |
| Conread position: | 131-521 |
| Cow position: | chr2:78754091-78754476 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 333, 73 |
| Conread position: | 141-511 |
| Cow position: | chr2:5874674-5874303 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 52 |
| Conread position: | 143-523 |
| Cow position: | chr2:86465860-86466238 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 149-524 |
| Cow position: | chr2:78754440-78754811 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 207-513 |
| Cow position: | chr2:48689471-48689166 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 236-505 |
| Cow position: | chr2:82799457-82799726 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 123, 114 |
| Conread position: | 317-506 |
| Cow position: | chr2:82799454-82799643 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 117 |
Show alignments to all cow chromosomes.