Cow genome map

Conread name: Ss1.1-raor029_h22.5

Conread position: 1-476
Cow position:
Alignm length: 486
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 105

Conread position: 1-478
Cow position:
Alignm length: 489
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 42

Conread position: 1-479
Cow position:
Alignm length: 490
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 42

Conread position: 1-511
Cow position:
Alignm length: 522
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 103

Conread position: 1-512
Cow position:
Alignm length: 515
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 1-513
Cow position:
Alignm length: 523
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 1-513
Cow position:
Alignm length: 524
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 106

Conread position: 1-514
Cow position:
Alignm length: 525
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 189

Conread position: 1-514
Cow position:
Alignm length: 528
Alignm identity: 327
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 41

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 25

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 105

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 105

Conread position: 1-524
Cow position:
Alignm length: 538
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 106

Conread position: 1-524
Cow position:
Alignm length: 534
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 444

Conread position: 1-526
Cow position:
Alignm length: 536
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 119

Conread position: 1-528
Cow position:
Alignm length: 538
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 442

Conread position: 1-528
Cow position:
Alignm length: 538
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 120

Conread position: 2-386
Cow position:
Alignm length: 395
Alignm identity: 249
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 70, 385

Conread position: 2-511
Cow position:
Alignm length: 520
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 360

Conread position: 3-462
Cow position:
Alignm length: 471
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 117

Conread position: 3-478
Cow position:
Alignm length: 487
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 40

Conread position: 3-510
Cow position:
Alignm length: 518
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 184

Conread position: 3-513
Cow position:
Alignm length: 522
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 118

Conread position: 3-513
Cow position:
Alignm length: 521
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 272

Conread position: 3-513
Cow position:
Alignm length: 520
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 3-513
Cow position:
Alignm length: 521
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 105

Conread position: 3-514
Cow position:
Alignm length: 525
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 116

Conread position: 3-515
Cow position:
Alignm length: 540
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 119

Conread position: 3-515
Cow position:
Alignm length: 523
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 117

Conread position: 3-528
Cow position:
Alignm length: 535
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 3-528
Cow position:
Alignm length: 537
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 118

Conread position: 6-512
Cow position:
Alignm length: 518
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 42-511
Cow position:
Alignm length: 481
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 75

Conread position: 42-511
Cow position:
Alignm length: 484
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 64

Conread position: 42-513
Cow position:
Alignm length: 483
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 64

Conread position: 42-513
Cow position:
Alignm length: 484
Alignm identity: 309
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 64

Conread position: 60-514
Cow position:
Alignm length: 458
Alignm identity: 292
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 154, 21

Conread position: 66-512
Cow position:
Alignm length: 450
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 45

Conread position: 73-395
Cow position:
Alignm length: 325
Alignm identity: 217
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 17, 45

Conread position: 73-511
Cow position:
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 38

Conread position: 73-511
Cow position:
Alignm length: 440
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 186

Conread position: 73-512
Cow position:
Alignm length: 440
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-513
Cow position:
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 38

Conread position: 73-513
Cow position:
Alignm length: 443
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 73-513
Cow position:
Alignm length: 445
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 48

Conread position: 73-515
Cow position:
Alignm length: 446
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 38

Conread position: 73-515
Cow position:
Alignm length: 444
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 38

Conread position: 73-516
Cow position:
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 73-524
Cow position:
Alignm length: 453
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 73-526
Cow position:
Alignm length: 457
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 25

Conread position: 73-528
Cow position:
Alignm length: 456
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-528
Cow position:
Alignm length: 457
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 357

Conread position: 74-506
Cow position:
Alignm length: 433
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-511
Cow position:
Alignm length: 441
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 202

Conread position: 74-513
Cow position:
Alignm length: 443
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 74-513
Cow position:
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 74-513
Cow position:
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 74-514
Cow position:
Alignm length: 442
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 200

Conread position: 74-515
Cow position:
Alignm length: 443
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 39

Conread position: 75-314
Cow position:
Alignm length: 243
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 25

Conread position: 75-314
Cow position:
Alignm length: 244
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 120

Conread position: 75-466
Cow position:
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 25

Conread position: 75-477
Cow position:
Alignm length: 408
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 37

Conread position: 75-481
Cow position:
Alignm length: 412
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 30

Conread position: 75-507
Cow position:
Alignm length: 434
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 75-507
Cow position:
Alignm length: 434
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 49

Conread position: 75-511
Cow position:
Alignm length: 437
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 75-512
Cow position:
Alignm length: 438
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 75-513
Cow position:
Alignm length: 440
Alignm identity: 272
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 14, 23

Conread position: 75-514
Cow position:
Alignm length: 443
Alignm identity: 279
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 12, 23

Conread position: 75-514
Cow position:
Alignm length: 442
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 147

Conread position: 75-514
Cow position:
Alignm length: 441
Alignm identity: 277
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 105, 113

Conread position: 75-515
Cow position:
Alignm length: 443
Alignm identity: 283
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 37

Conread position: 75-517
Cow position:
Alignm length: 447
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 75-517
Cow position:
Alignm length: 448
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 34

Conread position: 75-524
Cow position:
Alignm length: 452
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 126

Conread position: 76-513
Cow position:
Alignm length: 442
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 126

Conread position: 76-515
Cow position:
Alignm length: 442
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 38

Conread position: 76-515
Cow position:
Alignm length: 444
Alignm identity: 278
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 22

Conread position: 76-525
Cow position:
Alignm length: 451
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 26

Conread position: 77-511
Cow position:
Alignm length: 438
Alignm identity: 272
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 13, 38

Conread position: 78-482
Cow position:
Alignm length: 408
Alignm identity: 245
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 28

Conread position: 78-493
Cow position:
Alignm length: 420
Alignm identity: 264
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 12, 40

Conread position: 78-513
Cow position:
Alignm length: 440
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 110-515
Cow position:
Alignm length: 409
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 242

Conread position: 112-513
Cow position:
Alignm length: 420
Alignm identity: 252
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 158, 163

Conread position: 114-515
Cow position:
Alignm length: 403
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 143

Conread position: 114-515
Cow position:
Alignm length: 403
Alignm identity: 253
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 249, 257

Conread position: 115-520
Cow position:
Alignm length: 407
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 142

Conread position: 116-511
Cow position:
Alignm length: 400
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 67

Conread position: 116-514
Cow position:
Alignm length: 401
Alignm identity: 240
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 71

Conread position: 116-515
Cow position:
Alignm length: 403
Alignm identity: 257
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 156, 147

Conread position: 117-394
Cow position:
Alignm length: 279
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 162, 154

Conread position: 117-512
Cow position:
Alignm length: 397
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 319

Conread position: 117-522
Cow position:
Alignm length: 406
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 0

Conread position: 121-528
Cow position:
Alignm length: 408
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 122-514
Cow position:
Alignm length: 395
Alignm identity: 239
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 152, 142

Conread position: 123-513
Cow position:
Alignm length: 392
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 144

Conread position: 123-516
Cow position:
Alignm length: 399
Alignm identity: 240
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 148

Conread position: 128-515
Cow position:
Alignm length: 391
Alignm identity: 258
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 74

Conread position: 134-514
Cow position:
Alignm length: 381
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 135-515
Cow position:
Alignm length: 383
Alignm identity: 243
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 56, 67

Conread position: 140-418
Cow position:
Alignm length: 281
Alignm identity: 184
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 119

Conread position: 141-513
Cow position:
Alignm length: 374
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 134

Conread position: 152-507
Cow position:
Alignm length: 358
Alignm identity: 227
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 127, 117

Conread position: 152-515
Cow position:
Alignm length: 365
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 121, 85

Conread position: 159-511
Cow position:
Alignm length: 356
Alignm identity: 237
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 36, 41

Conread position: 186-511
Cow position:
Alignm length: 326
Alignm identity: 201
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 190-526
Cow position:
Alignm length: 338
Alignm identity: 216
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 117, 112

Conread position: 191-513
Cow position:
Alignm length: 324
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 232, 242

Conread position: 191-513
Cow position:
Alignm length: 324
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 240

Conread position: 202-515
Cow position:
Alignm length: 315
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 73

Conread position: 216-462
Cow position:
Alignm length: 249
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 136, 124

Conread position: 218-512
Cow position:
Alignm length: 295
Alignm identity: 203
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 235-520
Cow position:
Alignm length: 287
Alignm identity: 180
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 17, 24

Conread position: 278-513
Cow position:
Alignm length: 236
Alignm identity: 173
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 286-523
Cow position:
Alignm length: 238
Alignm identity: 169
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 309-521
Cow position:
Alignm length: 214
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 133, 117

Show alignments to all cow chromosomes.