Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-405 |
| Cow position: | chr23:25724104-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 1-479 |
| Cow position: | chr23:25626557-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 1-480 |
| Cow position: | chr23:25660258-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 107 |
| Conread position: | 1-514 |
| Cow position: | chr23:24547307-24546785 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 113 |
| Conread position: | 1-514 |
| Cow position: | chr23:25698633-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 1-517 |
| Cow position: | chr23:25626305-25626827 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 1-526 |
| Cow position: | chr23:24536022-24535488 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 2-443 |
| Cow position: | chr23:25626639-25627090 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 3-330 |
| Cow position: | chr23:24639745-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 3-462 |
| Cow position: | chr23:24547137-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-515 |
| Cow position: | chr23:25660176-25660697 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 3-524 |
| Cow position: | chr23:25626223-25626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 3-528 |
| Cow position: | chr23:24560697-24560163 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 271 |
| Conread position: | 42-463 |
| Cow position: | chr23:24639700-24640129 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 42-515 |
| Cow position: | chr23:24626216-24626686 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 73-406 |
| Cow position: | chr23:24546974-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 73-460 |
| Cow position: | chr23:25724107-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-465 |
| Cow position: | chr23:24654053-24654444 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 73-497 |
| Cow position: | chr23:24626328-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 73-511 |
| Cow position: | chr23:25626050-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-511 |
| Cow position: | chr23:25626218-25626653 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 203 |
| Conread position: | 73-512 |
| Cow position: | chr23:24639488-24639927 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-512 |
| Cow position: | chr23:24639572-24640011 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-512 |
| Cow position: | chr23:25698636-25698197 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 73-513 |
| Cow position: | chr23:24535857-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 105 |
| Conread position: | 73-514 |
| Cow position: | chr23:24639320-24639761 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 73-515 |
| Cow position: | chr23:24560534-24560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 410 |
| Conread position: | 73-515 |
| Cow position: | chr23:24639404-24639846 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 73-524 |
| Cow position: | chr23:24560786-24560335 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 73-525 |
| Cow position: | chr23:24522713-24522264 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 112 |
| Conread position: | 73-528 |
| Cow position: | chr23:24547142-24546687 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-528 |
| Cow position: | chr23:24560870-24560415 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 73-528 |
| Cow position: | chr23:24639236-24639691 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 74-458 |
| Cow position: | chr23:24522547-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 74-514 |
| Cow position: | chr23:25626471-25626908 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 74-524 |
| Cow position: | chr23:24547309-24546859 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-481 |
| Cow position: | chr23:24639658-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 75-503 |
| Cow position: | chr23:25626556-25626981 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 75-515 |
| Cow position: | chr23:25626136-25626576 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 385 |
| Conread position: | 75-517 |
| Cow position: | chr23:24536023-24535581 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 143 |
| Conread position: | 75-520 |
| Cow position: | chr23:24560700-24560255 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 75-521 |
| Cow position: | chr23:25660173-25660620 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 79-514 |
| Cow position: | chr23:24522791-24522359 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 115-528 |
| Cow position: | chr23:25626008-25626421 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 154 |
| Conread position: | 117-515 |
| Cow position: | chr23:24560910-24560512 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 135-514 |
| Cow position: | chr23:25625946-25626323 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 136-515 |
| Cow position: | chr23:24522569-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 142 |
| Conread position: | 141-513 |
| Cow position: | chr23:24522811-24522444 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 143-462 |
| Cow position: | chr23:24521972-24521658 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 201, 244 |
| Conread position: | 146-480 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 127, 121 |
| Conread position: | 147-516 |
| Cow position: | chr23:24547320-24546951 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 117 |
| Conread position: | 153-511 |
| Cow position: | chr23:24639232-24639590 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 281 |
| Conread position: | 153-513 |
| Cow position: | chr23:24536029-24535669 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 153-515 |
| Cow position: | chr23:25660167-25660529 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 153-524 |
| Cow position: | chr23:25698640-25698269 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 159-528 |
| Cow position: | chr23:25724105-25723736 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 98 |
| Conread position: | 162-528 |
| Cow position: | chr23:24626177-24626531 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 191-515 |
| Cow position: | chr23:25698686-25698362 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 70, 74 |
| Conread position: | 201-516 |
| Cow position: | chr23:24547350-24547035 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 216-511 |
| Cow position: | chr23:25660146-25660441 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 216-528 |
| Cow position: | chr23:24536050-24535738 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-466 |
| Cow position: | chr23:24521982-24521732 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 222-514 |
| Cow position: | chr23:24522814-24522527 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 234, 21 |
| Conread position: | 235-516 |
| Cow position: | chr23:24654047-24654328 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-528 |
| Cow position: | chr23:24522118-24521839 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 241-514 |
| Cow position: | chr23:25724107-25723834 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 272-520 |
| Cow position: | chr23:24542374-24542130 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 136, 147 |
| Conread position: | 296-517 |
| Cow position: | chr23:24654024-24654245 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 311-510 |
| Cow position: | chr23:24521972-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 318-511 |
| Cow position: | chr23:24639229-24639422 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-519 |
| Cow position: | chr23:25660164-25660365 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 325-526 |
| Cow position: | chr23:25724107-25723906 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 14 |
Show alignments to all cow chromosomes.