Cow genome map


           Conread name:
           Ss1.1-raor029_h22.5
        

               Conread position:
               1-405
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               1-479
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 30
               

               Conread position:
               1-480
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 107
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 113
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               323
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               31, 18
               

               Conread position:
               1-517
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 35
               

               Conread position:
               1-526
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 37
               

               Conread position:
               2-443
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               284
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               3-330
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               39, 33
               

               Conread position:
               3-462
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               3-524
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               3-528
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 271
               

               Conread position:
               42-463
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               42-515
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 45
               

               Conread position:
               73-406
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               16, 26
               

               Conread position:
               73-460
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-465
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               15, 24
               

               Conread position:
               73-497
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               397, 0
               

               Conread position:
               73-511
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-511
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 203
               

               Conread position:
               73-512
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-512
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-512
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 40
               

               Conread position:
               73-513
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 105
               

               Conread position:
               73-514
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 39
               

               Conread position:
               73-515
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               429, 410
               

               Conread position:
               73-515
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 25
               

               Conread position:
               73-524
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 25
               

               Conread position:
               73-525
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 112
               

               Conread position:
               73-528
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-528
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               73-528
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 21
               

               Conread position:
               74-458
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               74-514
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 50
               

               Conread position:
               74-524
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               75-481
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 21
               

               Conread position:
               75-503
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 22
               

               Conread position:
               75-515
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               397, 385
               

               Conread position:
               75-517
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 143
               

               Conread position:
               75-520
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 22
               

               Conread position:
               75-521
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 18
               

               Conread position:
               79-514
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 18
               

               Conread position:
               115-528
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 154
               

               Conread position:
               117-515
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 67
               

               Conread position:
               135-514
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               136-515
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 142
               

               Conread position:
               141-513
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               249
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               128, 21
               

               Conread position:
               143-462
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               201, 244
               

               Conread position:
               146-480
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               127, 121
               

               Conread position:
               147-516
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 117
               

               Conread position:
               153-511
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 281
               

               Conread position:
               153-513
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 277
               

               Conread position:
               153-515
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 25
               

               Conread position:
               153-524
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               21, 31
               

               Conread position:
               159-528
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 98
               

               Conread position:
               162-528
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 63
               

               Conread position:
               191-515
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               222
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               70, 74
               

               Conread position:
               201-516
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 15
               

               Conread position:
               216-511
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               205
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               22, 14
               

               Conread position:
               216-528
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               217-466
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               222-514
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               234, 21
               

               Conread position:
               235-516
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               198
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               236-528
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               16, 21
               

               Conread position:
               241-514
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               24, 13
               

               Conread position:
               272-520
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               136, 147
               

               Conread position:
               296-517
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               16, 7
               

               Conread position:
               311-510
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 68
               

               Conread position:
               318-511
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               318-519
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               325-526
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               24, 14
               
Show alignments to all cow chromosomes.