Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-328 |
| Cow position: | chr24:17013186-17013521 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 104 |
| Conread position: | 1-396 |
| Cow position: | chr24:17070649-17071053 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 76, 197 |
| Conread position: | 1-515 |
| Cow position: | chr24:17035684-17035161 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 121 |
| Conread position: | 1-515 |
| Cow position: | chr24:17035936-17035413 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 1-524 |
| Cow position: | chr24:17078071-17077539 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 105 |
| Conread position: | 1-528 |
| Cow position: | chr24:17036356-17035820 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 3-434 |
| Cow position: | chr24:17077901-17077462 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 79, 208 |
| Conread position: | 3-514 |
| Cow position: | chr24:17070483-17071003 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 354 |
| Conread position: | 3-515 |
| Cow position: | chr24:17036102-17035581 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 103 |
| Conread position: | 3-524 |
| Cow position: | chr24:17036270-17035740 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 439 |
| Conread position: | 3-524 |
| Cow position: | chr24:17036522-17035992 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 103 |
| Conread position: | 42-317 |
| Cow position: | chr24:17070774-17071058 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 42-514 |
| Cow position: | chr24:17035559-17035078 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 65-513 |
| Cow position: | chr24:17078081-17077634 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 9 |
| Conread position: | 73-407 |
| Cow position: | chr24:17035267-17034934 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 202, 192 |
| Conread position: | 73-461 |
| Cow position: | chr24:17077906-17077518 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-492 |
| Cow position: | chr24:17036608-17036192 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 73-493 |
| Cow position: | chr24:17035939-17035519 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 73-511 |
| Cow position: | chr24:17036359-17035921 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 73-515 |
| Cow position: | chr24:17035687-17035245 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 194 |
| Conread position: | 73-515 |
| Cow position: | chr24:17070394-17070836 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 73-526 |
| Cow position: | chr24:17036107-17035654 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 74-474 |
| Cow position: | chr24:17070647-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 75-407 |
| Cow position: | chr24:17013185-17013516 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 75-524 |
| Cow position: | chr24:17070480-17070929 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 78-481 |
| Cow position: | chr24:17035430-17035027 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 78-514 |
| Cow position: | chr24:17078153-17077717 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-514 |
| Cow position: | chr24:17078237-17077801 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 104-351 |
| Cow position: | chr24:16986397-16986643 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 169, 16 |
| Conread position: | 111-524 |
| Cow position: | chr24:17035733-17035320 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-528 |
| Cow position: | chr24:17036483-17036072 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 152 |
| Conread position: | 121-480 |
| Cow position: | chr24:17013147-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 155 |
| Conread position: | 165-515 |
| Cow position: | chr24:17078317-17077968 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 205-528 |
| Cow position: | chr24:17013147-17013470 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 216-524 |
| Cow position: | chr24:17070369-17070677 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-445 |
| Cow position: | chr24:16986445-16986653 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 114 |
| Conread position: | 237-515 |
| Cow position: | chr24:17036612-17036337 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 304-515 |
| Cow position: | chr24:16986428-16986639 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 136, 127 |
Show alignments to all cow chromosomes.