Cow genome map


           Conread name:
           Ss1.1-raor029_h22.5
        

               Conread position:
               1-466
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 111
               

               Conread position:
               1-475
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 104
               

               Conread position:
               1-502
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 105
               

               Conread position:
               1-505
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 267
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 62
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               1-528
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               336
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               77, 128
               

               Conread position:
               2-512
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 103
               

               Conread position:
               2-523
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 209
               

               Conread position:
               2-524
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 104
               

               Conread position:
               3-392
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               3-459
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               288
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               44, 51
               

               Conread position:
               3-505
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 102
               

               Conread position:
               3-512
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 40
               

               Conread position:
               3-512
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 52
               

               Conread position:
               3-512
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               3-514
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 110
               

               Conread position:
               3-522
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 103
               

               Conread position:
               3-524
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 103
               

               Conread position:
               3-526
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               3-528
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 52
               

               Conread position:
               38-514
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 60
               

               Conread position:
               42-312
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               42-515
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               45-515
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               304
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               29, 139
               

               Conread position:
               63-514
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 35
               

               Conread position:
               72-310
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               17, 25
               

               Conread position:
               72-449
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               17, 25
               

               Conread position:
               73-505
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               73-512
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 22
               

               Conread position:
               73-514
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               73-514
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               73-514
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-524
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 39
               

               Conread position:
               73-524
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-525
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               73-525
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 39
               

               Conread position:
               74-512
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               74-515
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 193
               

               Conread position:
               74-523
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               75-308
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               12, 22
               

               Conread position:
               75-383
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               13, 29
               

               Conread position:
               75-440
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 21
               

               Conread position:
               75-458
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               238
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               75-459
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               13, 29
               

               Conread position:
               75-475
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 20
               

               Conread position:
               75-506
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 24
               

               Conread position:
               75-512
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 58
               

               Conread position:
               75-512
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               75-513
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 22
               

               Conread position:
               75-513
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 273
               

               Conread position:
               75-514
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               75-515
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 22
               

               Conread position:
               75-524
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               75-525
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 66
               

               Conread position:
               76-471
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               127, 121
               

               Conread position:
               76-512
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               281
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               14, 77
               

               Conread position:
               77-506
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 21
               

               Conread position:
               77-523
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 35
               

               Conread position:
               77-528
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 18
               

               Conread position:
               78-429
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               10, 19
               

               Conread position:
               78-465
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 180
               

               Conread position:
               78-512
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               10, 19
               

               Conread position:
               78-514
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 24
               

               Conread position:
               78-524
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               78, 68
               

               Conread position:
               81-503
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               85, 15
               

               Conread position:
               81-528
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               290
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               20, 12
               

               Conread position:
               83-467
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               171, 9
               

               Conread position:
               96-524
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               103-443
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               79, 104
               

               Conread position:
               107-512
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-524
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 244
               

               Conread position:
               111-519
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 30
               

               Conread position:
               117-492
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               248
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               134, 141
               

               Conread position:
               117-505
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               252
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               336, 95
               

               Conread position:
               120-512
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               310, 61
               

               Conread position:
               120-515
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               256
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               189, 182
               

               Conread position:
               126-511
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               135-511
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               36, 43
               

               Conread position:
               135-524
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-528
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               256
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               31, 40
               

               Conread position:
               138-483
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               16, 11
               

               Conread position:
               141-467
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               110, 117
               

               Conread position:
               144-484
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               30, 40
               

               Conread position:
               155-528
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               120, 25
               

               Conread position:
               162-512
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               261, 265
               

               Conread position:
               178-515
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               9, 192
               

               Conread position:
               196-512
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               200-525
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               61, 75
               

               Conread position:
               201-515
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               203-422
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               207-513
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               215, 220
               

               Conread position:
               213-512
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               96, 89
               

               Conread position:
               216-511
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               36, 46
               

               Conread position:
               217-513
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               58, 52
               

               Conread position:
               217-513
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               21, 43
               

               Conread position:
               223-511
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               52, 46
               

               Conread position:
               235-513
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               249-528
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               41, 20
               

               Conread position:
               274-510
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               274-524
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               276-528
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               32, 157
               

               Conread position:
               277-514
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               303-515
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               193, 0
               

               Conread position:
               307-528
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               116, 123
               

               Conread position:
               309-514
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               9, 41
               
Show alignments to all cow chromosomes.