Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-473 |
| Cow position: | chr28:7758430-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 1-479 |
| Cow position: | chr28:9253125-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 1-486 |
| Cow position: | chr28:9299089-9299569 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 91 |
| Conread position: | 1-493 |
| Cow position: | chr28:7810454-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 1-506 |
| Cow position: | chr28:7758278-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-512 |
| Cow position: | chr28:7757438-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 106 |
| Conread position: | 1-513 |
| Cow position: | chr28:34673377-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 1-515 |
| Cow position: | chr28:9253041-9253564 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 1-525 |
| Cow position: | chr28:7757606-7758139 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 1-526 |
| Cow position: | chr28:7810370-7810895 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 167 |
| Conread position: | 1-528 |
| Cow position: | chr28:9299006-9299527 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 2-523 |
| Cow position: | chr28:7757691-7758221 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 3-462 |
| Cow position: | chr28:9299245-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 3-463 |
| Cow position: | chr28:34673463-34673932 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 3-490 |
| Cow position: | chr28:34696104-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 121 |
| Conread position: | 3-514 |
| Cow position: | chr28:34696020-34696540 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 324 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 31-528 |
| Cow position: | chr28:9290141-9290640 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 42-512 |
| Cow position: | chr28:7757815-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 42-528 |
| Cow position: | chr28:7810252-7810729 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 43-524 |
| Cow position: | chr28:9289664-9290138 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 66-512 |
| Cow position: | chr28:34679548-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 298 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 71-350 |
| Cow position: | chr28:9290435-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 72-410 |
| Cow position: | chr28:7810609-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 72-524 |
| Cow position: | chr28:7758022-7758458 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 73-398 |
| Cow position: | chr28:9253290-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 73-515 |
| Cow position: | chr28:7810367-7810800 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 73-524 |
| Cow position: | chr28:7757939-7758391 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 0 |
| Conread position: | 73-526 |
| Cow position: | chr28:9252788-9253239 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 73-526 |
| Cow position: | chr28:9252954-9253407 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-528 |
| Cow position: | chr28:7757435-7757890 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-447 |
| Cow position: | chr28:33210248-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 74-511 |
| Cow position: | chr28:7757604-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 74-512 |
| Cow position: | chr28:9290272-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 74-524 |
| Cow position: | chr28:9253039-9253489 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 75-477 |
| Cow position: | chr28:7758429-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 349 |
| Conread position: | 75-505 |
| Cow position: | chr28:34673376-34673806 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 77-506 |
| Cow position: | chr28:9298590-9299016 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 78-500 |
| Cow position: | chr28:11333945-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 265 |
| Conread position: | 78-506 |
| Cow position: | chr28:11334113-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 100 |
| Conread position: | 109-512 |
| Cow position: | chr28:9252905-9253309 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 110-520 |
| Cow position: | chr28:9289812-9290216 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 249, 71 |
| Conread position: | 116-526 |
| Cow position: | chr28:7757150-7757552 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 116-528 |
| Cow position: | chr28:9252747-9253157 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 202, 144 |
| Conread position: | 117-526 |
| Cow position: | chr28:34695891-34696300 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 79 |
| Conread position: | 120-511 |
| Cow position: | chr28:34695726-34696117 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 120-524 |
| Cow position: | chr28:7757398-7757802 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-514 |
| Cow position: | chr28:34679572-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 133-514 |
| Cow position: | chr28:33210222-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 141-511 |
| Cow position: | chr28:7757335-7757705 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-515 |
| Cow position: | chr28:34673362-34673732 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 148-526 |
| Cow position: | chr28:7758334-7758712 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-526 |
| Cow position: | chr28:9298582-9298953 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 159-514 |
| Cow position: | chr28:11334200-11333845 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 182-511 |
| Cow position: | chr28:34679598-34679268 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 92, 48 |
| Conread position: | 220-514 |
| Cow position: | chr28:34673353-34673647 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 201, 210 |
| Conread position: | 222-502 |
| Cow position: | chr28:33210228-33210508 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 224-524 |
| Cow position: | chr28:7757334-7757634 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-515 |
| Cow position: | chr28:34673348-34673564 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 150 |
Show alignments to all cow chromosomes.