Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-469 |
| Cow position: | chr3:62722051-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 1-477 |
| Cow position: | chr3:68045875-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 467 |
| Conread position: | 1-506 |
| Cow position: | chr3:62742968-62743460 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 25 |
| Conread position: | 1-514 |
| Cow position: | chr3:68027114-68027636 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 104 |
| Conread position: | 1-514 |
| Cow position: | chr3:68045707-68046229 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 202 |
| Conread position: | 1-515 |
| Cow position: | chr3:62722219-62721696 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 1-528 |
| Cow position: | chr3:62722135-62721599 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 358 |
| Conread position: | 42-436 |
| Cow position: | chr3:62743076-62743474 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 42-516 |
| Cow position: | chr3:62742258-62742737 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 377 |
| Conread position: | 42-526 |
| Cow position: | chr3:62742674-62743144 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 66-506 |
| Cow position: | chr3:77351061-77350631 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 83, 31 |
| Conread position: | 72-525 |
| Cow position: | chr3:77351306-77350861 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 73-407 |
| Cow position: | chr3:77350893-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 100, 111 |
| Conread position: | 73-514 |
| Cow position: | chr3:62742965-62743384 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 33 |
| Conread position: | 73-514 |
| Cow position: | chr3:68045872-68046313 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 200 |
| Conread position: | 73-524 |
| Cow position: | chr3:62722222-62721771 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 73-524 |
| Cow position: | chr3:62722306-62721855 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 277 |
| Conread position: | 74-395 |
| Cow position: | chr3:62721885-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 74-514 |
| Cow position: | chr3:68027280-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 195 |
| Conread position: | 75-481 |
| Cow position: | chr3:68027365-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 356 |
| Conread position: | 75-514 |
| Cow position: | chr3:68027113-68027552 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 192 |
| Conread position: | 75-514 |
| Cow position: | chr3:68045706-68046145 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 76-514 |
| Cow position: | chr3:77351134-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 107-511 |
| Cow position: | chr3:68026977-68027381 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 108-525 |
| Cow position: | chr3:62722355-62721938 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 111-514 |
| Cow position: | chr3:68045574-68045977 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 115-514 |
| Cow position: | chr3:62742507-62742902 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 134 |
| Conread position: | 115-514 |
| Cow position: | chr3:68027069-68027468 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 242, 236 |
| Conread position: | 115-515 |
| Cow position: | chr3:68045662-68046062 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-496 |
| Cow position: | chr3:77350927-77350557 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 243, 219 |
| Conread position: | 181-514 |
| Cow position: | chr3:68045560-68045893 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 86 |
| Conread position: | 181-515 |
| Cow position: | chr3:68026967-68027301 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 297-510 |
| Cow position: | chr3:16020465-16020259 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.