Cow genome map

Conread name: Ss1.1-raor029_h22.5

Conread position: 1-512
Cow position:
Alignm length: 525
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 1-512
Cow position:
Alignm length: 522
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 100

Conread position: 1-512
Cow position:
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 105

Conread position: 1-513
Cow position:
Alignm length: 527
Alignm identity: 338
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 42, 23

Conread position: 1-513
Cow position:
Alignm length: 525
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 25

Conread position: 1-513
Cow position:
Alignm length: 529
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 17

Conread position: 1-513
Cow position:
Alignm length: 532
Alignm identity: 333
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 45, 17

Conread position: 1-514
Cow position:
Alignm length: 521
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 21

Conread position: 1-514
Cow position:
Alignm length: 526
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 1-514
Cow position:
Alignm length: 523
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 1-515
Cow position:
Alignm length: 526
Alignm identity: 330
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 123

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 44

Conread position: 1-515
Cow position:
Alignm length: 530
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 25

Conread position: 1-516
Cow position:
Alignm length: 528
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 131

Conread position: 1-517
Cow position:
Alignm length: 530
Alignm identity: 334
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 75, 126

Conread position: 1-524
Cow position:
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 100

Conread position: 1-528
Cow position:
Alignm length: 539
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 105

Conread position: 2-512
Cow position:
Alignm length: 522
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 104

Conread position: 2-514
Cow position:
Alignm length: 523
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 105

Conread position: 2-515
Cow position:
Alignm length: 526
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 268

Conread position: 3-511
Cow position:
Alignm length: 522
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 3-511
Cow position:
Alignm length: 521
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 39

Conread position: 3-514
Cow position:
Alignm length: 521
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 117

Conread position: 3-528
Cow position:
Alignm length: 537
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 104

Conread position: 9-511
Cow position:
Alignm length: 518
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 96

Conread position: 36-514
Cow position:
Alignm length: 494
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 80

Conread position: 42-512
Cow position:
Alignm length: 481
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 244

Conread position: 42-513
Cow position:
Alignm length: 482
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 316

Conread position: 42-514
Cow position:
Alignm length: 482
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 42-515
Cow position:
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 318

Conread position: 42-515
Cow position:
Alignm length: 490
Alignm identity: 321
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 52, 82

Conread position: 42-524
Cow position:
Alignm length: 493
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 403

Conread position: 46-515
Cow position:
Alignm length: 485
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 146

Conread position: 53-515
Cow position:
Alignm length: 478
Alignm identity: 309
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 41, 223

Conread position: 54-349
Cow position:
Alignm length: 301
Alignm identity: 197
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 31, 51

Conread position: 73-384
Cow position:
Alignm length: 312
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 73-440
Cow position:
Alignm length: 369
Alignm identity: 243
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 177, 68

Conread position: 73-447
Cow position:
Alignm length: 376
Alignm identity: 229
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 100, 111

Conread position: 73-514
Cow position:
Alignm length: 445
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 26

Conread position: 73-514
Cow position:
Alignm length: 443
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 73-514
Cow position:
Alignm length: 443
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 39

Conread position: 73-515
Cow position:
Alignm length: 445
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 27

Conread position: 73-528
Cow position:
Alignm length: 458
Alignm identity: 271
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 14, 32

Conread position: 74-511
Cow position:
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 75-435
Cow position:
Alignm length: 362
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 75-513
Cow position:
Alignm length: 442
Alignm identity: 282
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 116, 127

Conread position: 75-513
Cow position:
Alignm length: 444
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 13

Conread position: 75-515
Cow position:
Alignm length: 443
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 21

Conread position: 75-515
Cow position:
Alignm length: 446
Alignm identity: 279
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 116, 123

Conread position: 75-515
Cow position:
Alignm length: 446
Alignm identity: 288
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 15, 43

Conread position: 76-513
Cow position:
Alignm length: 442
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 77-511
Cow position:
Alignm length: 436
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 269

Conread position: 77-523
Cow position:
Alignm length: 447
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 78-511
Cow position:
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 78-515
Cow position:
Alignm length: 442
Alignm identity: 285
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 14, 25

Conread position: 103-520
Cow position:
Alignm length: 419
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 326

Conread position: 107-512
Cow position:
Alignm length: 408
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 331

Conread position: 107-514
Cow position:
Alignm length: 411
Alignm identity: 266
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 26, 153

Conread position: 108-524
Cow position:
Alignm length: 419
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 9

Conread position: 112-511
Cow position:
Alignm length: 402
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 75

Conread position: 113-524
Cow position:
Alignm length: 412
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 115-514
Cow position:
Alignm length: 402
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 150

Conread position: 116-511
Cow position:
Alignm length: 397
Alignm identity: 249
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 232, 248

Conread position: 116-511
Cow position:
Alignm length: 396
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 123-472
Cow position:
Alignm length: 352
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 142

Conread position: 123-515
Cow position:
Alignm length: 395
Alignm identity: 263
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 57, 79

Conread position: 128-512
Cow position:
Alignm length: 386
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 24

Conread position: 128-515
Cow position:
Alignm length: 392
Alignm identity: 259
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 74, 54

Conread position: 134-515
Cow position:
Alignm length: 382
Alignm identity: 247
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 134-515
Cow position:
Alignm length: 385
Alignm identity: 246
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 153, 140

Conread position: 138-524
Cow position:
Alignm length: 389
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 98

Conread position: 141-512
Cow position:
Alignm length: 372
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-514
Cow position:
Alignm length: 363
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 114

Conread position: 193-500
Cow position:
Alignm length: 310
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 82

Conread position: 201-433
Cow position:
Alignm length: 234
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 117, 108

Conread position: 214-511
Cow position:
Alignm length: 301
Alignm identity: 197
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 61, 56

Conread position: 227-511
Cow position:
Alignm length: 289
Alignm identity: 188
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 58, 47

Conread position: 237-524
Cow position:
Alignm length: 289
Alignm identity: 200
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 124, 114

Conread position: 283-516
Cow position:
Alignm length: 235
Alignm identity: 165
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 156, 149

Conread position: 284-512
Cow position:
Alignm length: 229
Alignm identity: 164
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 140, 0

Conread position: 284-517
Cow position:
Alignm length: 238
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 19

Conread position: 318-515
Cow position:
Alignm length: 198
Alignm identity: 139
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.