Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-512 |
| Cow position: | chr7:3180307-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 1-512 |
| Cow position: | chr7:18390268-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 100 |
| Conread position: | 1-512 |
| Cow position: | chr7:42879002-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 105 |
| Conread position: | 1-513 |
| Cow position: | chr7:1014379-1014894 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 338 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 1-513 |
| Cow position: | chr7:3180055-3180576 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 1-513 |
| Cow position: | chr7:8243408-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 1-513 |
| Cow position: | chr7:8278122-8278635 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 333 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 1-514 |
| Cow position: | chr7:1014547-1015063 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 1-514 |
| Cow position: | chr7:3179803-3180325 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 1-514 |
| Cow position: | chr7:18390100-18390622 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-515 |
| Cow position: | chr7:8242821-8243344 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 81, 123 |
| Conread position: | 1-515 |
| Cow position: | chr7:8277954-8278475 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 1-515 |
| Cow position: | chr7:8324839-8325362 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 1-516 |
| Cow position: | chr7:18390016-18390540 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 131 |
| Conread position: | 1-517 |
| Cow position: | chr7:8277282-8277807 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 334 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 75, 126 |
| Conread position: | 1-524 |
| Cow position: | chr7:42878834-42878302 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 100 |
| Conread position: | 1-528 |
| Cow position: | chr7:42879086-42878550 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 2-512 |
| Cow position: | chr7:42879169-42878650 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 104 |
| Conread position: | 2-514 |
| Cow position: | chr7:42879253-42878732 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 105 |
| Conread position: | 2-515 |
| Cow position: | chr7:1014296-1014812 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 268 |
| Conread position: | 3-511 |
| Cow position: | chr7:1014963-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 3-511 |
| Cow position: | chr7:11601079-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 3-514 |
| Cow position: | chr7:18390186-18390706 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-515 |
| Cow position: | chr7:42878748-42878226 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 117 |
| Conread position: | 3-528 |
| Cow position: | chr7:42878916-42878382 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 9-511 |
| Cow position: | chr7:1439500-1440011 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 36-514 |
| Cow position: | chr7:11601133-11600643 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 42-512 |
| Cow position: | chr7:3179928-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 244 |
| Conread position: | 42-513 |
| Cow position: | chr7:11600956-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 316 |
| Conread position: | 42-514 |
| Cow position: | chr7:3180180-3180661 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 42-515 |
| Cow position: | chr7:3180264-3180746 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 318 |
| Conread position: | 42-515 |
| Cow position: | chr7:8243282-8243763 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 321 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 42-524 |
| Cow position: | chr7:3179760-3180251 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 403 |
| Conread position: | 46-515 |
| Cow position: | chr7:8325136-8325614 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 146 |
| Conread position: | 53-515 |
| Cow position: | chr7:8243628-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 41, 223 |
| Conread position: | 54-349 |
| Cow position: | chr7:11434573-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 73-384 |
| Cow position: | chr7:11600748-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-440 |
| Cow position: | chr7:1439910-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 177, 68 |
| Conread position: | 73-447 |
| Cow position: | chr7:1438352-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 100, 111 |
| Conread position: | 73-514 |
| Cow position: | chr7:1014874-1015315 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 73-514 |
| Cow position: | chr7:1014958-1015399 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 73-514 |
| Cow position: | chr7:11601168-11600727 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 73-515 |
| Cow position: | chr7:3180052-3180494 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 73-528 |
| Cow position: | chr7:1438102-1438555 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 74-511 |
| Cow position: | chr7:1014791-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 75-435 |
| Cow position: | chr7:18390435-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 75-513 |
| Cow position: | chr7:8277449-8277887 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 116, 127 |
| Conread position: | 75-513 |
| Cow position: | chr7:8324838-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 75-515 |
| Cow position: | chr7:1014546-1014980 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 75-515 |
| Cow position: | chr7:8277281-8277721 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 116, 123 |
| Conread position: | 75-515 |
| Cow position: | chr7:8325426-8325866 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 76-513 |
| Cow position: | chr7:8325679-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 126 |
| Conread position: | 77-511 |
| Cow position: | chr7:1014296-1014724 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 269 |
| Conread position: | 77-523 |
| Cow position: | chr7:42879253-42878807 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-511 |
| Cow position: | chr7:8324757-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 78-515 |
| Cow position: | chr7:8325597-8326034 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 103-520 |
| Cow position: | chr7:1014238-1014655 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 326 |
| Conread position: | 107-512 |
| Cow position: | chr7:8277649-8278054 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 331 |
| Conread position: | 107-514 |
| Cow position: | chr7:1014073-1014481 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 108-524 |
| Cow position: | chr7:1014742-1015157 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 9 |
| Conread position: | 112-511 |
| Cow position: | chr7:1014163-1014562 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 113-524 |
| Cow position: | chr7:3179756-3180167 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-514 |
| Cow position: | chr7:11601210-11600811 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 150 |
| Conread position: | 116-511 |
| Cow position: | chr7:1438311-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 232, 248 |
| Conread position: | 116-511 |
| Cow position: | chr7:1439869-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 123-472 |
| Cow position: | chr7:11600782-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 142 |
| Conread position: | 123-515 |
| Cow position: | chr7:11434663-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 128-512 |
| Cow position: | chr7:42879370-42878986 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 128-515 |
| Cow position: | chr7:8277838-8278225 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 134-515 |
| Cow position: | chr7:8324729-8325110 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-515 |
| Cow position: | chr7:11434820-11434446 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 153, 140 |
| Conread position: | 138-524 |
| Cow position: | chr7:42879445-42879058 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 141-512 |
| Cow position: | chr7:42879273-42878902 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-514 |
| Cow position: | chr7:3179712-3180073 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 114 |
| Conread position: | 193-500 |
| Cow position: | chr7:11601216-11600909 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 201-433 |
| Cow position: | chr7:11434508-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 117, 108 |
| Conread position: | 214-511 |
| Cow position: | chr7:18389986-18390283 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 227-511 |
| Cow position: | chr7:8242804-8243088 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 237-524 |
| Cow position: | chr7:3179712-3179999 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 124, 114 |
| Conread position: | 283-516 |
| Cow position: | chr7:11601210-11600977 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 156, 149 |
| Conread position: | 284-512 |
| Cow position: | chr7:1439448-1439674 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 284-517 |
| Cow position: | chr7:8277238-8277472 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 318-515 |
| Cow position: | chr7:3179709-3179906 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.