Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-467 |
| Cow position: | chr8:6958058-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 1-498 |
| Cow position: | chr8:45201712-45202209 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 313 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 71, 272 |
| Conread position: | 1-513 |
| Cow position: | chr8:46816571-46817092 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 103 |
| Conread position: | 1-514 |
| Cow position: | chr8:45200788-45201310 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-514 |
| Cow position: | chr8:48407608-48407086 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 267 |
| Conread position: | 1-524 |
| Cow position: | chr8:45200956-45201488 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 1-524 |
| Cow position: | chr8:46816403-46816935 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 1-524 |
| Cow position: | chr8:46816655-46817187 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 122 |
| Conread position: | 1-524 |
| Cow position: | chr8:46816823-46817355 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 438 |
| Conread position: | 1-526 |
| Cow position: | chr8:45201040-45201574 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 110 |
| Conread position: | 1-526 |
| Cow position: | chr8:45201292-45201826 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-527 |
| Cow position: | chr8:46816151-46816686 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-528 |
| Cow position: | chr8:46816319-46816855 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 285 |
| Conread position: | 3-454 |
| Cow position: | chr8:45201546-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 3-476 |
| Cow position: | chr8:46816909-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 349 |
| Conread position: | 3-479 |
| Cow position: | chr8:55581266-55581751 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 305 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-497 |
| Cow position: | chr8:48407270-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 52 |
| Conread position: | 3-513 |
| Cow position: | chr8:46816237-46816756 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 100 |
| Conread position: | 3-513 |
| Cow position: | chr8:55581182-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 3-515 |
| Cow position: | chr8:48407438-48406917 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 103 |
| Conread position: | 3-515 |
| Cow position: | chr8:55581014-55581535 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 3-523 |
| Cow position: | chr8:48406934-48406405 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 331 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 3-525 |
| Cow position: | chr8:46816489-46817020 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-528 |
| Cow position: | chr8:46816741-46817275 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 4-528 |
| Cow position: | chr8:46815899-46816435 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 103 |
| Conread position: | 42-525 |
| Cow position: | chr8:46816108-46816600 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 224 |
| Conread position: | 42-528 |
| Cow position: | chr8:45201165-45201660 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 48-528 |
| Cow position: | chr8:45200760-45201240 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 49 |
| Conread position: | 66-500 |
| Cow position: | chr8:6958067-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 351, 9 |
| Conread position: | 73-471 |
| Cow position: | chr8:48406687-48406289 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 73-504 |
| Cow position: | chr8:55580925-55581356 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 73-512 |
| Cow position: | chr8:55581009-55581448 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 73-513 |
| Cow position: | chr8:45200953-45201393 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-524 |
| Cow position: | chr8:45201289-45201740 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-524 |
| Cow position: | chr8:48407443-48406992 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 104 |
| Conread position: | 73-525 |
| Cow position: | chr8:45201457-45201909 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-528 |
| Cow position: | chr8:45201541-45201996 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-404 |
| Cow position: | chr8:48406602-48406272 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 74-515 |
| Cow position: | chr8:48407022-48406581 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 290 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 74-519 |
| Cow position: | chr8:48407106-48406661 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 74-524 |
| Cow position: | chr8:46816065-46816515 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 74-524 |
| Cow position: | chr8:48407274-48406824 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 74-528 |
| Cow position: | chr8:46815894-46816351 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 206 |
| Conread position: | 75-523 |
| Cow position: | chr8:48407609-48407161 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-514 |
| Cow position: | chr8:55580844-55581282 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 76-524 |
| Cow position: | chr8:55580760-55581208 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 82-515 |
| Cow position: | chr8:48406761-48406329 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 92-524 |
| Cow position: | chr8:48407677-48407244 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 338 |
| Conread position: | 114-525 |
| Cow position: | chr8:55581218-55581629 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-525 |
| Cow position: | chr8:46815693-46816096 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 136, 92 |
| Conread position: | 141-524 |
| Cow position: | chr8:55580740-55581124 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 159-492 |
| Cow position: | chr8:6958059-6957727 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 266, 284 |
| Conread position: | 212-505 |
| Cow position: | chr8:46815540-46815827 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 246-511 |
| Cow position: | chr8:6958056-6957791 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 317-525 |
| Cow position: | chr8:48407619-48407411 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-528 |
| Cow position: | chr8:6958059-6957858 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.