Cow genome map
| Conread name: | Ss1.1-raor029_h22.5 |
| Conread position: | 1-487 |
| Cow position: | chrX:25324725-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 1-513 |
| Cow position: | chrX:25325733-25325212 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 105 |
| Conread position: | 1-516 |
| Cow position: | chrX:25309828-25310352 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 205 |
| Conread position: | 1-524 |
| Cow position: | chrX:25309912-25310444 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 1-524 |
| Cow position: | chrX:25324977-25324445 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 107 |
| Conread position: | 1-524 |
| Cow position: | chrX:25325229-25324697 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 126 |
| Conread position: | 1-524 |
| Cow position: | chrX:25325397-25324865 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 100 |
| Conread position: | 1-524 |
| Cow position: | chrX:25325817-25325285 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 1-525 |
| Cow position: | chrX:25325313-25324780 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 1-525 |
| Cow position: | chrX:29045553-29045041 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 108, 95 |
| Conread position: | 1-528 |
| Cow position: | chrX:25324809-25324273 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 1-528 |
| Cow position: | chrX:25325061-25324525 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 294 |
| Conread position: | 1-528 |
| Cow position: | chrX:25325481-25324945 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-528 |
| Cow position: | chrX:25325565-25325029 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 271 |
| Conread position: | 1-528 |
| Cow position: | chrX:29045238-29044702 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 1-528 |
| Cow position: | chrX:29045721-29045206 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 271 |
| Conread position: | 3-513 |
| Cow position: | chrX:25325143-25324624 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-515 |
| Cow position: | chrX:25309998-25310519 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 277 |
| Conread position: | 3-528 |
| Cow position: | chrX:29045635-29045122 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 345 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 78, 197 |
| Conread position: | 41-513 |
| Cow position: | chrX:12627258-12627728 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 42-492 |
| Cow position: | chrX:29045113-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 42-513 |
| Cow position: | chrX:25324852-25324372 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 42-516 |
| Cow position: | chrX:25309626-25310100 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 73-322 |
| Cow position: | chrX:25310329-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 73-487 |
| Cow position: | chrX:29045808-29045396 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 73-507 |
| Cow position: | chrX:25325820-25325386 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 73-512 |
| Cow position: | chrX:13826677-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 73-528 |
| Cow position: | chrX:25309741-25310194 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 73-528 |
| Cow position: | chrX:29045325-29044870 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 184 |
| Conread position: | 74-404 |
| Cow position: | chrX:29045723-29045393 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-406 |
| Cow position: | chrX:25310246-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 74-514 |
| Cow position: | chrX:25309826-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 76-528 |
| Cow position: | chrX:29045238-29044786 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 78-519 |
| Cow position: | chrX:13826924-13826483 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 112-524 |
| Cow position: | chrX:29045367-29044958 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 115-499 |
| Cow position: | chrX:25310203-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 117-502 |
| Cow position: | chrX:14181327-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 129-518 |
| Cow position: | chrX:12627513-12627902 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 156, 136 |
| Conread position: | 130-528 |
| Cow position: | chrX:25325847-25325449 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 134-511 |
| Cow position: | chrX:29045831-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 135-427 |
| Cow position: | chrX:12627770-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 153-513 |
| Cow position: | chrX:13826933-13826573 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 113 |
| Conread position: | 195-526 |
| Cow position: | chrX:25325866-25325535 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 196-528 |
| Cow position: | chrX:29045853-29045521 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 222-522 |
| Cow position: | chrX:13826948-13826648 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-524 |
| Cow position: | chrX:25309670-25309940 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 336-524 |
| Cow position: | chrX:25309668-25309856 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 66 |
Show alignments to all cow chromosomes.