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Cow genome map

           
Conread name:
           
Ss1.1-raor037_p12.5
        

               
Conread position:
               
1-92
               

               
Cow position:
               
chr9:31416716-31416625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-93
               

               
Cow position:
               
chr9:13471798-13471706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-93
               

               
Cow position:
               
chr9:22462698-22462606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-93
               

               
Cow position:
               
chr9:22732478-22732386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-93
               

               
Cow position:
               
chr9:38634576-38634668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-93
               

               
Cow position:
               
chr9:47088246-47088338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
1-93
               

               
Cow position:
               
chr9:55447178-55447270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-109
               

               
Cow position:
               
chr9:28736966-28736858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr9:35129173-35129053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr9:41728880-41728760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr9:32070978-32070855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr9:20038812-20038937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr9:1464047-1463916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr9:11132585-11132712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr9:12039715-12039842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr9:28017029-28016900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr9:11477459-11477327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr9:19903401-19903265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr9:52739551-52739689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr9:8908773-8908638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr9:48628580-48628441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr9:40216609-40216464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr9:26115501-26115649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:9010598-9010753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:9817258-9817101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:17296303-17296151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:18540124-18539974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:28681999-28682151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:29357468-29357316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:44921063-44921209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr9:3742144-3741988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr9:26065070-26065225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr9:30187503-30187658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr9:34737869-34738026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr9:37943127-37942975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr9:41857877-41857722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr9:41999911-42000065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr9:7384815-7384971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr9:3744613-3744770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:764259-764101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:2528314-2528472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
136, 130
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:3220468-3220315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:3312351-3312508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:5218831-5218988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:5524539-5524383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:9404718-9404876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:9681875-9681717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:12259457-12259299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:18427077-18426919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:19155487-19155331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:22318687-22318529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:22456414-22456256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:24424214-24424372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:30661520-30661678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:32236608-32236451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:35564740-35564582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:36383647-36383483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:48574093-48573938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:50695008-50695166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:51779902-51779744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:52753424-52753266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:59386431-59386586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr9:63028919-63028761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr9:43622185-43622023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
22, 115
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr9:6366188-6366351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr9:34690534-34690699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr9:60081493-60081335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:10634671-10634832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr9:3724713-3724878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr9:10546622-10546456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr9:46657262-46657097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr9:5094886-5094720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
149, 22
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:198743-198573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:771451-771280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:1741802-1741971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:2483383-2483212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:3062406-3062577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:5158737-5158908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:8235464-8235293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:11810435-11810268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:13313341-13313512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:15999192-15999358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:17018553-17018724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:17060559-17060388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:17879729-17879900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:24218195-24218365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:26380590-26380761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:27040910-27041078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:33844119-33844290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:43225110-43224940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:46666990-46666819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:50519630-50519460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:51105037-51105208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:56177672-56177842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr9:56566874-56567045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr9:19546317-19546489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr9:13186379-13186556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
164, 27
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr9:11837389-11837568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
173, 162
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr9:20393779-20393956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr9:22828421-22828236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr9:48809864-48809681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
154, 174
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr9:37986514-37986329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr9:5415167-5415355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr9:26477900-26477721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr9:42047843-42047647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr9:42049129-42048933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr9:8637005-8636805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr9:27345088-27345290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr9:52409106-52409303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr9:29812590-29812394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr9:25464736-25464934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 84
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr9:5886598-5886394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
188, 75
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr9:49271001-49271208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr9:2715287-2715078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr9:5455642-5455434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr9:26431371-26431161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr9:44268927-44268717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr9:19303340-19303550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr9:26099692-26099480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 171
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr9:42426693-42426902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
184, 159
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr9:5071265-5071463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr9:12656327-12656537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr9:44579421-44579208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
163, 7
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr9:6210466-6210673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr9:17410840-17411039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr9:18215564-18215766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr9:34355584-34355788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr9:34696947-34697156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr9:44517907-44517701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr9:45484510-45484302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr9:6192115-6192323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr9:42571014-42571228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:380432-380218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
207, 172
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:1100383-1100596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
207, 129
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:1122492-1122707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:1981982-1982197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:2023043-2022831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:3208256-3208471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:3996975-3996757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:6693924-6694139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:6707111-6706896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:6735909-6736124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:7103432-7103217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:7830096-7829885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
207, 75
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:8900646-8900432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:10643139-10642920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:10803468-10803683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:11057129-11056915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 64
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:11215654-11215868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 17
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:11555497-11555712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:12545894-12546107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 41
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:13620198-13619983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:14387005-14387219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
207, 150
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:14871529-14871740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
207, 75
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:15843216-15843431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:16497484-16497267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:17103987-17103772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:17617375-17617589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
181, 150
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:18710361-18710146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 94
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:20092442-20092658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:24428269-24428482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:24591808-24592023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:25597379-25597602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:25645281-25645066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:25701397-25701182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:28786140-28786354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 25
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:30334267-30334053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:30821587-30821370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:32341611-32341827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:32495665-32495451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 21
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:33726010-33726225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:36025306-36025091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:36357166-36357381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:37108905-37109120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:37251811-37252026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:39302754-39302538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:40978317-40978102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:41145786-41145571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:42831616-42831401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:43319993-43319780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:43806292-43806077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:46683188-46683403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:47604254-47604469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:47799505-47799290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:50002275-50002061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:50327500-50327715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:51177854-51177640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:54473483-54473259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:54483742-54483957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:55589424-55589209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:58233114-58233329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:59668505-59668720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:62546352-62546137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:64011436-64011221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:64014072-64013857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr9:8154528-8154314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr9:27085812-27085597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr9:49434246-49434461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr9:54177896-54178114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
88, 183
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr9:43814788-43814580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr9:1070485-1070267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
207, 47
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr9:1846665-1846882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
205, 12
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr9:20901788-20902009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 84
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr9:41485670-41485864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
215, 8
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr9:54428749-54428528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr9:761301-761525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr9:1838750-1838974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr9:50899853-50899629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr9:53744127-53744351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr9:53777975-53778193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr9:3169170-3169395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 83
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr9:47926253-47926038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr9:50872660-50872443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr9:59529967-59530185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr9:28705861-28706073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
207, 66
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr9:12321712-12321935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr9:54666253-54666030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr9:62357179-62357402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 157
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr9:25969695-25969468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
86, 171
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr9:49544714-49544933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr9:27476239-27476013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
214, 92
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr9:16755959-16756191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr9:8418028-8418261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
211, 30
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr9:31281516-31281749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr9:10919201-10919435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr9:44211303-44211537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr9:20237659-20237891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
211, 90
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr9:50919742-50919504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 197
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr9:5839334-5839105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 95
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr9:8937497-8937260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr9:10940399-10940635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr9:11750636-11750403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
198, 40
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr9:21823556-21823792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr9:2393826-2393587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr9:12428158-12428397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr9:46316439-46316670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
220, 156
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr9:47499849-47500093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr9:20810718-20810951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
219, 40
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:1296118-1295877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
187, 195
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:6440981-6441222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:10632395-10632158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
207, 165
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:12275302-12275060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:13994537-13994296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 172
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:15335699-15335459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
207, 64
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:23000804-23001045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:26462228-26462468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
181, 175
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:26518485-26518728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
86, 226
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:26718875-26719116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
207, 224
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:29516089-29515848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:31528366-31528125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:32238734-32238493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:37157814-37157573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:38676475-38676716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:38728444-38728206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
195, 81
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:39774792-39774551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:40316920-40317161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:41313531-41313772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:43845262-43845021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:46875016-46874775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:47385434-47385675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
219, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:49872649-49872406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:54672476-54672235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:55425632-55425868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 107
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:55534261-55534505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 175
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:56837306-56837547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:3053884-3054125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
207, 63
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:5594849-5594611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
219, 165
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:9443243-9443486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
75, 170
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:14003775-14004016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:19542257-19542016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
191, 76
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:20406984-20406745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
215, 10
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:31662815-31662575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
168, 40
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:48106768-48107007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 167
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:50691220-50691475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 172
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr9:42585277-42585521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
212, 127
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr9:42405674-42405927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
207, 84
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr9:28773466-28773222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
218, 157
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr9:37510366-37510113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
164, 118
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr9:5268905-5268648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:6880117-6879864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
218, 55
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:56031980-56032229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:58647391-58647140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
97, 165
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr9:14796435-14796681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
219, 25
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr9:975372-975101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
81, 76
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr9:3411117-3410864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr9:3520592-3520851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr9:7634613-7634368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr9:18008524-18008770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
220, 40
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr9:22616968-22616719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr9:57950982-57951228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
212, 12
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr9:3192329-3192591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr9:31077329-31077589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
212, 170
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr9:44467000-44467262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
215, 220
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr9:5161725-5161975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
219, 40
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr9:28948202-28947944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
60, 171
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr9:35167522-35167261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr9:38184129-38184395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
164, 170
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:1950271-1950008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 127
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:2398283-2398537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
216, 162
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:3594180-3594442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
93, 27
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:3807391-3807652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
219, 40
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:4928974-4928716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:5621682-5621946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
207, 52
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:5628617-5628880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
207, 95
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:7363384-7363113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 172
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:8548151-8547902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 34
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:8997905-8997638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:9461310-9461567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
219, 15
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:10082429-10082694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:10127324-10127584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
215, 21
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:10308660-10308920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
130, 15
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:10566566-10566295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 229
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:12284908-12284643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:13205221-13205477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:17740596-17740859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:18121554-18121290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
184, 192
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:18252581-18252834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:19714419-19714163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 147
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:20739052-20738790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
58, 166
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:20989106-20989369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
209, 46
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:21279525-21279260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:22151743-22151994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
219, 31
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:22443265-22443539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:23388330-23388589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:28726377-28726632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
219, 113
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:30664433-30664695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 40
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:31124574-31124841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
164, 169
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:31639968-31640234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 224
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:32812695-32812433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 85
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:35369229-35368966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
207, 184
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:35904402-35904657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
216, 167
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:36445970-36445717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:38344244-38343979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 208
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:38793368-38793102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
133, 209
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:38961088-38961346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
85, 158
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:43871321-43871067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
205, 139
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:47389946-47389691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:49279800-49279563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
213, 96
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:49982748-49983011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
222, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:51318107-51317844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
207, 154
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:52504955-52505222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 55
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:56253250-56252986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 86
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:61022958-61022699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 39
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:62360880-62361146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
207, 225
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:64050211-64050472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:64092035-64091773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
167, 37
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr9:4976900-4976634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
219, 0
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr9:8387911-8388174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
205, 162
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr9:32540258-32539991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
172, 159
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr9:61997247-61997512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr9:14974578-14974843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr9:35375770-35375515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
219, 81
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:27697382-27697649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:1650374-1650097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 169
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:6064945-6065220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
85, 162
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:16218297-16218569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
164, 40
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:21030666-21030386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:31811311-31811583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:34016209-34016485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:38753839-38754112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:63784579-63784847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
181, 15
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:1855627-1855343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 22
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:4645985-4646252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
219, 41
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:5510073-5509800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 176
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:6089452-6089169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:9200372-9200646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 169
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:20681060-20681329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:21888518-21888243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
214, 165
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:22114291-22114558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
219, 35
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:23028149-23027881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:25964475-25964754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
185, 195
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:29808810-29808533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 60
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:29841238-29840961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
61, 158
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:31347302-31347032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:34000263-34000545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
63, 47
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:34957703-34957976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
216, 94
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:39971382-39971121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
263, 120
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:41680082-41679822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:41789636-41789361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 123
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:54528864-54528588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
217, 199
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:62657141-62656878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
228, 149
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr9:9552434-9552168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
260, 63
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr9:30402068-30402345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
25, 175
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr9:4534634-4534912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
187, 43
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr9:8441299-8441020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr9:20318239-20318504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
263, 30
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr9:27038912-27039192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 96
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr9:27781113-27780830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr9:56293709-56293425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 224
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr9:16180032-16180316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr9:26992830-26993107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
138, 40
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:6253362-6253645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
263, 186
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:7006539-7006827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:10327033-10327321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:17579664-17579378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
216, 223
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:18505746-18505458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:25514837-25515125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:28025619-28025908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:29106828-29107114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
174, 162
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:32973164-32973446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:37967460-37967175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
207, 71
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:41319320-41319606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
214, 17
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:43301808-43301527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:59454100-59453825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr9:59689312-59689598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:173976-173688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
207, 248
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:214114-214400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:2421926-2422215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:3004542-3004252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 276
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:3546992-3547278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
207, 16
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:8099477-8099757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
212, 51
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:12717885-12717595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:18478097-18477808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:19222692-19222981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
181, 162
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:22572866-22573155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:22626070-22626359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:22656597-22656886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:23576129-23576419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:27936319-27936608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:27994059-27993770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:28244702-28244413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:28292879-28292590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:29149149-29148860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:30118386-30118099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 41
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:31489266-31489555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:34894518-34894229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:36685313-36685602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:36687245-36686956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:42475288-42474999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:43494847-43495136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:44751811-44751522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:47045746-47046035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:53565075-53565364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:54412832-54412548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
211, 184
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:56529755-56529466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:56530613-56530324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:59149272-59149561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:59539801-59540087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
207, 139
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:60554350-60554638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
257, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr9:62817421-62817132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr9:56300799-56300508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr9:3388040-3387752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr9:12194427-12194135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
187, 194
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr9:35203248-35202940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 238
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr9:52407516-52407228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
213, 23
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr9:3185623-3185333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
188, 37
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr9:45877343-45877641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
218, 0
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr9:61223507-61223210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
207, 224
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr9:18162803-18163101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr9:20848286-20847984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr9:63746150-63745866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
212, 40
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr9:26434714-26435003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
8, 161
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:241488-241789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:1520380-1520685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 104
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:3057829-3057528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:4674042-4674343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 66
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:8187867-8188167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
207, 291
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:10761615-10761915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:25037599-25037299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:25996843-25996543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
207, 142
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:26391113-26390820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
219, 80
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:29082767-29082466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:29534618-29534916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
160, 167
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:42208875-42209177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
173, 193
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:42703651-42703953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
179, 159
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr9:58439437-58439727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
219, 34
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr9:29006916-29006612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 149
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:17929105-17928810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:18002603-18002903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
211, 40
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:42445624-42445932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:42998113-42998420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
73, 139
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:56773428-56773128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
219, 115
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:8868787-8869093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:8998704-8998398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
219, 143
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:31078735-31079037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:42498177-42497870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:47882487-47882178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
210, 106
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:11830357-11830054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
227, 84
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr9:2676251-2675935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:3933885-3934195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
188, 178
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:4939695-4939385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:9093515-9093205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
207, 294
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:10666166-10666476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
207, 291
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:12379244-12379550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
207, 162
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:22623352-22623042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
207, 291
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:27301857-27301547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
207, 294
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:31361374-31361064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
207, 294
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:37260545-37260235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 294
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:38623920-38624232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
179, 293
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:42357404-42357092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 303
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:44169903-44170213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
182, 190
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:52448962-52449270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:55886439-55886133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
207, 22
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:60410201-60410511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
207, 294
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr9:18381209-18380902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 166
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:50606604-50606915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
219, 152
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr9:44831708-44832020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
216, 90
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr9:5433980-5433664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
220, 84
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr9:1997478-1997168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
219, 39
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr9:16300219-16300538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr9:20416162-20416479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr9:21459806-21460123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
65, 170
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr9:22361362-22361041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 56
               
UCSC Genome Browser

               
Conread position:
               
1-325
               

               
Cow position:
               
chr9:28747176-28747489 (view  custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
216, 40
               
UCSC Genome Browser

               
               
               
Conread position:
1-325

               
               
               
Cow position:
chr9:29184788-29185106 (view  custom track)

               
               
               
Alignm length:
329

               
               
               
Alignm identity:
236

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
271, 40
UCSC Genome Browser

               
               
               
Conread position:
1-331

               
               
               
Cow position:
chr9:5226816-5227156 (view  custom track)

               
               
               
Alignm length:
342

               
               
               
Alignm identity:
246

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
211, 84

               
               
               Conread position:1-331
               
               
               Cow position:chr9:20942264-20942585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):207, 16

               
               
               Conread position:1-331
               
               
               Cow position:chr9:45756701-45756388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):264, 31

               
               
               Conread position:1-341
               
               
               Cow position:chr9:246428-246762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):207, 90

               
               
               Conread position:1-341
               
               
               Cow position:chr9:1053599-1053262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-341
               
               
               Cow position:chr9:7872528-7872865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-341
               
               
               Cow position:chr9:9611088-9610751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-341
               
               
               Cow position:chr9:19593112-19593453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):207, 139

               
               
               Conread position:1-341
               
               
               Cow position:chr9:35304545-35304882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-341
               
               
               Cow position:chr9:40164580-40164917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):179, 159

               
               
               Conread position:1-341
               
               
               Cow position:chr9:42696767-42697104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-341
               
               
               Cow position:chr9:43526949-43526612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-341
               
               
               Cow position:chr9:47961450-47961787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-341
               
               
               Cow position:chr9:63564288-63564625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):207, 294

               
               
               Conread position:1-350
               
               
               Cow position:chr9:49220157-49219804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:2-127
               
               
               Cow position:chr9:44500495-44500616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:2-139
               
               
               Cow position:chr9:64287395-64287259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:2-140
               
               
               Cow position:chr9:29097195-29097058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:2-141
               
               
               Cow position:chr9:6763971-6763832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-141
               
               
               Cow position:chr9:8525413-8525273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:2-151
               
               
               Cow position:chr9:59197645-59197791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:2-152
               
               
               Cow position:chr9:20816189-20816047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:2-152
               
               
               Cow position:chr9:22433595-22433743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:2-156
               
               
               Cow position:chr9:11097667-11097822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):146, 83

               
               
               Conread position:2-156
               
               
               Cow position:chr9:31115475-31115630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 96

               
               
               Conread position:2-156
               
               
               Cow position:chr9:34523574-34523414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:2-163
               
               
               Cow position:chr9:39583169-39583010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:2-168
               
               
               Cow position:chr9:33697293-33697474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:2-172
               
               
               Cow position:chr9:2137034-2136865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:2-172
               
               
               Cow position:chr9:14591942-14592112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-204
               
               
               Cow position:chr9:46628110-46628312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-204
               
               
               Cow position:chr9:57594628-57594827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 45

               
               
               Conread position:2-206
               
               
               Cow position:chr9:44516044-44515841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:2-210
               
               
               Cow position:chr9:1061896-1061688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):203, 143

               
               
               Conread position:2-212
               
               
               Cow position:chr9:5340980-5340775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:2-212
               
               
               Cow position:chr9:62034979-62034774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-213
               
               
               Cow position:chr9:49301523-49301316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:2-214
               
               
               Cow position:chr9:8534338-8534545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:2-222
               
               
               Cow position:chr9:2034516-2034298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):208, 39

               
               
               Conread position:2-236
               
               
               Cow position:chr9:1569772-1569538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):158, 180

               
               
               Conread position:2-241
               
               
               Cow position:chr9:13181710-13181945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):206, 63

               
               
               Conread position:2-241
               
               
               Cow position:chr9:17568485-17568254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:2-241
               
               
               Cow position:chr9:64055514-64055753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):144, 83

               
               
               Conread position:2-242
               
               
               Cow position:chr9:13221548-13221782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:2-242
               
               
               Cow position:chr9:36623106-36623336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:2-242
               
               
               Cow position:chr9:48564443-48564193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):163, 231

               
               
               Conread position:2-253
               
               
               Cow position:chr9:26404137-26403885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr9:3379459-3379211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr9:28983534-28983273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 158

               
               
               Conread position:2-265
               
               
               Cow position:chr9:33682023-33681772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):212, 38

               
               
               Conread position:2-265
               
               
               Cow position:chr9:39152339-39152590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:2-265
               
               
               Cow position:chr9:59172032-59172296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):206, 12

               
               
               Conread position:2-265
               
               
               Cow position:chr9:62442629-62442379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):216, 91

               
               
               Conread position:2-274
               
               
               Cow position:chr9:3932313-3932038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):214, 51

               
               
               Conread position:2-274
               
               
               Cow position:chr9:5246193-5245938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):214, 39

               
               
               Conread position:2-274
               
               
               Cow position:chr9:26057104-26057365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):205, 74

               
               
               Conread position:2-285
               
               
               Cow position:chr9:9016871-9017158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:2-286
               
               
               Cow position:chr9:34237956-34237669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:2-286
               
               
               Cow position:chr9:47171853-47172144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:2-295
               
               
               Cow position:chr9:648122-647833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):262, 51

               
               
               Conread position:2-298
               
               
               Cow position:chr9:55074787-55075081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:2-302
               
               
               Cow position:chr9:1951922-1952220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 91

               
               
               Conread position:2-304
               
               
               Cow position:chr9:44821956-44822259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:2-341
               
               
               Cow position:chr9:27302017-27302353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):203, 293

               
               
               Conread position:2-341
               
               
               Cow position:chr9:45853949-45853613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):206, 293

               
               
               Conread position:3-153
               
               
               Cow position:chr9:8720106-8719956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-159
               
               
               Cow position:chr9:5069470-5069311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 86

               
               
               Conread position:3-212
               
               
               Cow position:chr9:45974542-45974335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:3-213
               
               
               Cow position:chr9:20960935-20961144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 158

               
               
               Conread position:3-213
               
               
               Cow position:chr9:48017476-48017682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr9:10355210-10355425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:3-240
               
               
               Cow position:chr9:1990749-1990512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):205, 92

               
               
               Conread position:3-241
               
               
               Cow position:chr9:6887380-6887622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:3-242
               
               
               Cow position:chr9:13034721-13034959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):217, 200

               
               
               Conread position:3-242
               
               
               Cow position:chr9:17785112-17785350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:3-242
               
               
               Cow position:chr9:18139948-18140185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):190, 118

               
               
               Conread position:3-242
               
               
               Cow position:chr9:37017231-37016995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):217, 163

               
               
               Conread position:3-242
               
               
               Cow position:chr9:53602756-53602530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):212, 38

               
               
               Conread position:3-242
               
               
               Cow position:chr9:58451760-58451988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):236, 29

               
               
               Conread position:3-244
               
               
               Cow position:chr9:64453776-64454012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:3-250
               
               
               Cow position:chr9:33823438-33823202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):217, 82

               
               
               Conread position:3-256
               
               
               Cow position:chr9:11155852-11155607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):221, 82

               
               
               Conread position:3-265
               
               
               Cow position:chr9:10966288-10966027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):217, 58

               
               
               Conread position:3-265
               
               
               Cow position:chr9:34310381-34310115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr9:50080699-50080958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 163

               
               
               Conread position:3-265
               
               
               Cow position:chr9:53608047-53608306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):217, 105

               
               
               Conread position:3-265
               
               
               Cow position:chr9:55796098-55795849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-274
               
               
               Cow position:chr9:9723536-9723807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):227, 82

               
               
               Conread position:3-274
               
               
               Cow position:chr9:24726331-24726601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 163

               
               
               Conread position:3-274
               
               
               Cow position:chr9:34918937-34919186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):212, 51

               
               
               Conread position:3-274
               
               
               Cow position:chr9:39681705-39681416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):82, 124

               
               
               Conread position:3-283
               
               
               Cow position:chr9:15982735-15983015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:3-284
               
               
               Cow position:chr9:19539444-19539156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:3-285
               
               
               Cow position:chr9:22755137-22754852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):205, 77

               
               
               Conread position:3-285
               
               
               Cow position:chr9:53631181-53631466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):205, 94

               
               
               Conread position:3-285
               
               
               Cow position:chr9:58251893-58251609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:3-286
               
               
               Cow position:chr9:777000-776713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:3-286
               
               
               Cow position:chr9:26326546-26326833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:3-303
               
               
               Cow position:chr9:5319977-5319681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):7, 164

               
               
               Conread position:3-303
               
               
               Cow position:chr9:9516424-9516715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):219, 82

               
               
               Conread position:3-307
               
               
               Cow position:chr9:54610885-54611190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):217, 66

               
               
               Conread position:3-309
               
               
               Cow position:chr9:8236046-8236356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):217, 293

               
               
               Conread position:3-323
               
               
               Cow position:chr9:34666755-34666454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):214, 79

               
               
               Conread position:3-325
               
               
               Cow position:chr9:5763283-5763602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 220

               
               
               Conread position:3-331
               
               
               Cow position:chr9:6397441-6397758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):205, 58

               
               
               Conread position:3-331
               
               
               Cow position:chr9:53257719-53258029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:4-126
               
               
               Cow position:chr9:60027805-60027689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:4-156
               
               
               Cow position:chr9:9947183-9947031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-159
               
               
               Cow position:chr9:5861922-5862074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:4-172
               
               
               Cow position:chr9:20582026-20581858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:4-210
               
               
               Cow position:chr9:13304051-13304258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 139

               
               
               Conread position:4-212
               
               
               Cow position:chr9:24886276-24886478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 150

               
               
               Conread position:4-216
               
               
               Cow position:chr9:9566897-9566686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):204, 141

               
               
               Conread position:4-218
               
               
               Cow position:chr9:21963263-21963478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:4-233
               
               
               Cow position:chr9:29338689-29338917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:4-241
               
               
               Cow position:chr9:6305545-6305784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 221

               
               
               Conread position:4-241
               
               
               Cow position:chr9:43023767-43023530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:4-242
               
               
               Cow position:chr9:2718112-2718352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):184, 221

               
               
               Conread position:4-265
               
               
               Cow position:chr9:29776251-29776513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):204, 220

               
               
               Conread position:4-265
               
               
               Cow position:chr9:33218606-33218861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):218, 154

               
               
               Conread position:4-267
               
               
               Cow position:chr9:7410128-7409865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):206, 162

               
               
               Conread position:4-267
               
               
               Cow position:chr9:10092049-10092305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):203, 58

               
               
               Conread position:4-272
               
               
               Cow position:chr9:824301-824041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):209, 146

               
               
               Conread position:4-273
               
               
               Cow position:chr9:40327204-40327474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:4-285
               
               
               Cow position:chr9:27289499-27289220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):204, 159

               
               
               Conread position:4-286
               
               
               Cow position:chr9:31104132-31104418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:4-325
               
               
               Cow position:chr9:5501193-5500884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):216, 12

               
               
               Conread position:5-153
               
               
               Cow position:chr9:19743321-19743178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:5-153
               
               
               Cow position:chr9:59665357-59665210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr9:58551319-58551122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:5-210
               
               
               Cow position:chr9:2065374-2065167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:5-235
               
               
               Cow position:chr9:28969740-28969968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:5-235
               
               
               Cow position:chr9:37193005-37192774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):203, 220

               
               
               Conread position:5-242
               
               
               Cow position:chr9:61739261-61739029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):215, 80

               
               
               Conread position:5-243
               
               
               Cow position:chr9:64344675-64344904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):215, 43

               
               
               Conread position:5-273
               
               
               Cow position:chr9:33388563-33388823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):203, 146

               
               
               Conread position:5-283
               
               
               Cow position:chr9:5442334-5442059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:5-286
               
               
               Cow position:chr9:7058251-7057967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 275

               
               
               Conread position:5-301
               
               
               Cow position:chr9:54997680-54997980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):215, 59

               
               
               Conread position:6-242
               
               
               Cow position:chr9:9199441-9199668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:6-247
               
               
               Cow position:chr9:53109866-53109638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):214, 85

               
               
               Conread position:6-256
               
               
               Cow position:chr9:13169331-13169564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:7-206
               
               
               Cow position:chr9:12037492-12037296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):147, 160

               
               
               Conread position:7-209
               
               
               Cow position:chr9:6952433-6952235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:7-265
               
               
               Cow position:chr9:62773550-62773295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):201, 25

               
               
               Conread position:8-152
               
               
               Cow position:chr9:28740013-28739868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:8-256
               
               
               Cow position:chr9:3924960-3924718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 152

               
               
               Conread position:8-266
               
               
               Cow position:chr9:37528798-37528541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):214, 147

               
               
               Conread position:8-298
               
               
               Cow position:chr9:6933730-6934022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):212, 135

               
               
               Conread position:9-210
               
               
               Cow position:chr9:36586478-36586675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:9-213
               
               
               Cow position:chr9:36506923-36507126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):116, 160

               
               
               Conread position:9-274
               
               
               Cow position:chr9:9491129-9490869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):210, 38

               
               
               Conread position:9-274
               
               
               Cow position:chr9:26577521-26577778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):208, 38

               
               
               Conread position:9-285
               
               
               Cow position:chr9:10857826-10858103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):258, 210

               
               
               Conread position:10-206
               
               
               Cow position:chr9:3532569-3532756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:10-206
               
               
               Cow position:chr9:3574679-3574490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:10-215
               
               
               Cow position:chr9:32652551-32652347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):198, 153

               
               
               Conread position:10-241
               
               
               Cow position:chr9:44202284-44202052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:10-274
               
               
               Cow position:chr9:33093284-33093030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):204, 105

               
               
               Conread position:11-215
               
               
               Cow position:chr9:17391898-17392103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:11-286
               
               
               Cow position:chr9:24917478-24917206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):197, 31

               
               
               Conread position:13-156
               
               
               Cow position:chr9:15047132-15047275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-216
               
               
               Cow position:chr9:61224178-61223975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-294
               
               
               Cow position:chr9:32371430-32371700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:13-331
               
               
               Cow position:chr9:15805584-15805898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):305, 245

               
               
               Conread position:14-161
               
               
               Cow position:chr9:8307467-8307317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr9:21943849-21943996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-242
               
               
               Cow position:chr9:52689291-52689517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):198, 27

               
               
               Conread position:14-265
               
               
               Cow position:chr9:11299361-11299602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):205, 94

               
               
               Conread position:14-269
               
               
               Cow position:chr9:23430811-23431062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):206, 42

               
               
               Conread position:14-274
               
               
               Cow position:chr9:32677018-32676754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):199, 72

               
               
               Conread position:15-140
               
               
               Cow position:chr9:26438232-26438357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-236
               
               
               Cow position:chr9:47538183-47537959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 172

               
               
               Conread position:16-213
               
               
               Cow position:chr9:4284936-4285133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:16-215
               
               
               Cow position:chr9:37483820-37483620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:16-341
               
               
               Cow position:chr9:23362533-23362211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:17-213
               
               
               Cow position:chr9:8729391-8729583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:17-226
               
               
               Cow position:chr9:54924964-54924750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:17-235
               
               
               Cow position:chr9:2287380-2287163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):191, 146

               
               
               Conread position:17-236
               
               
               Cow position:chr9:54996436-54996655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:19-213
               
               
               Cow position:chr9:53412919-53413115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):115, 23

               
               
               Conread position:19-215
               
               
               Cow position:chr9:28654242-28654439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:19-328
               
               
               Cow position:chr9:52484590-52484893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):185, 53

               
               
               Conread position:20-206
               
               
               Cow position:chr9:4962553-4962375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:20-210
               
               
               Cow position:chr9:21840404-21840219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:20-232
               
               
               Cow position:chr9:5345578-5345364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):66, 205

               
               
               Conread position:20-265
               
               
               Cow position:chr9:47954895-47955139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:21-242
               
               
               Cow position:chr9:33100813-33101031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):202, 71

               
               
               Conread position:21-265
               
               
               Cow position:chr9:22227756-22227994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):67, 138

               
               
               Conread position:21-274
               
               
               Cow position:chr9:5393379-5393125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):244, 71

               
               
               Conread position:21-275
               
               
               Cow position:chr9:10118337-10118589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:21-341
               
               
               Cow position:chr9:20667200-20666883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):159, 139

               
               
               Conread position:26-265
               
               
               Cow position:chr9:64155532-64155772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):194, 182

               
               
               Conread position:26-307
               
               
               Cow position:chr9:41416674-41416394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):186, 66

               
               
               Conread position:28-241
               
               
               Cow position:chr9:52819175-52818965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 74

               
               
               Conread position:28-265
               
               
               Cow position:chr9:11317797-11317560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:29-213
               
               
               Cow position:chr9:11146334-11146517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:30-265
               
               
               Cow position:chr9:50976926-50977159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):180, 136

               
               
               Conread position:30-274
               
               
               Cow position:chr9:9957142-9956903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 138

               
               
               Conread position:32-274
               
               
               Cow position:chr9:54681819-54681583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):188, 51

               
               
               Conread position:35-178
               
               
               Cow position:chr9:26344670-26344810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:35-209
               
               
               Cow position:chr9:64475933-64476107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-210
               
               
               Cow position:chr9:30825315-30825139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:35-241
               
               
               Cow position:chr9:14724296-14724090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):173, 50

               
               
               Conread position:35-265
               
               
               Cow position:chr9:55256235-55256462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):185, 61

               
               
               Conread position:35-284
               
               
               Cow position:chr9:52518215-52518468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:35-286
               
               
               Cow position:chr9:34879412-34879666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr9:57896814-57897029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:37-270
               
               
               Cow position:chr9:5531915-5531679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):171, 48

               
               
               Conread position:37-341
               
               
               Cow position:chr9:6603837-6603538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):171, 129

               
               
               Conread position:41-262
               
               
               Cow position:chr9:45285222-45285435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):176, 125

               
               
               Conread position:42-145
               
               
               Cow position:chr9:16811005-16811107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:42-164
               
               
               Cow position:chr9:31226155-31226276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:42-211
               
               
               Cow position:chr9:16538493-16538668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:42-241
               
               
               Cow position:chr9:27289973-27290173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):166, 182

               
               
               Conread position:42-259
               
               
               Cow position:chr9:47046110-47046327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:42-260
               
               
               Cow position:chr9:1350138-1350353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):174, 53

               
               
               Conread position:42-265
               
               
               Cow position:chr9:36490587-36490803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):178, 116

               
               
               Conread position:42-273
               
               
               Cow position:chr9:40040870-40041100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):166, 142

               
               
               Conread position:44-211
               
               
               Cow position:chr9:25933191-25933355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 128

               
               
               Conread position:44-267
               
               
               Cow position:chr9:34103583-34103363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:44-274
               
               
               Cow position:chr9:20321807-20322028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 117

               
               
               Conread position:44-274
               
               
               Cow position:chr9:48343907-48343678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):173, 41

               
               
               Conread position:47-274
               
               
               Cow position:chr9:45170866-45171090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):175, 103

               
               
               Conread position:48-265
               
               
               Cow position:chr9:36067207-36066997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):172, 44

               
               
               Conread position:50-266
               
               
               Cow position:chr9:22696516-22696308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:51-257
               
               
               Cow position:chr9:35101166-35100964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):163, 115

               
               
               Conread position:52-258
               
               
               Cow position:chr9:17871808-17872011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:52-265
               
               
               Cow position:chr9:50076363-50076146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:52-290
               
               
               Cow position:chr9:52001303-52001065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):156, 14

               
               
               Conread position:53-206
               
               
               Cow position:chr9:36844128-36843983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:53-225
               
               
               Cow position:chr9:2977678-2977509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:53-227
               
               
               Cow position:chr9:32306145-32306312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:53-228
               
               
               Cow position:chr9:34400335-34400160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:53-242
               
               
               Cow position:chr9:36410055-36410246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:53-242
               
               
               Cow position:chr9:58133727-58133915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):167, 39

               
               
               Conread position:53-255
               
               
               Cow position:chr9:14961245-14961049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:53-262
               
               
               Cow position:chr9:41958498-41958708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:53-263
               
               
               Cow position:chr9:40542410-40542209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):166, 18

               
               
               Conread position:53-265
               
               
               Cow position:chr9:35305820-35306029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:53-265
               
               
               Cow position:chr9:35533655-35533864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):140, 39

               
               
               Conread position:53-267
               
               
               Cow position:chr9:15950858-15951066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:53-272
               
               
               Cow position:chr9:36999764-36999981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):154, 113

               
               
               Conread position:53-274
               
               
               Cow position:chr9:15215384-15215609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):154, 112

               
               
               Conread position:53-274
               
               
               Cow position:chr9:55084000-55084221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):160, 113

               
               
               Conread position:53-286
               
               
               Cow position:chr9:32306943-32307172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:53-297
               
               
               Cow position:chr9:34762556-34762795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:53-325
               
               
               Cow position:chr9:29034739-29035005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:54-167
               
               
               Cow position:chr9:36353986-36354099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:54-206
               
               
               Cow position:chr9:49689233-49689084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:54-242
               
               
               Cow position:chr9:49404050-49403865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:54-242
               
               
               Cow position:chr9:52578237-52578424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):105, 101

               
               
               Conread position:54-246
               
               
               Cow position:chr9:58674037-58673842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):111, 86

               
               
               Conread position:54-248
               
               
               Cow position:chr9:26310854-26310660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):162, 167

               
               
               Conread position:54-264
               
               
               Cow position:chr9:5327547-5327345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):158, 32

               
               
               Conread position:54-265
               
               
               Cow position:chr9:49764952-49764745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:54-274
               
               
               Cow position:chr9:25958709-25958497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:54-298
               
               
               Cow position:chr9:26278881-26279118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):213, 26

               
               
               Conread position:55-274
               
               
               Cow position:chr9:33940902-33940681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):159, 111

               
               
               Conread position:55-325
               
               
               Cow position:chr9:4861684-4861415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):157, 31

               
               
               Conread position:56-226
               
               
               Cow position:chr9:56453626-56453456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:56-265
               
               
               Cow position:chr9:30138419-30138217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):161, 36

               
               
               Conread position:56-266
               
               
               Cow position:chr9:12184040-12183836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):160, 29

               
               
               Conread position:56-273
               
               
               Cow position:chr9:41513913-41513701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):159, 102

               
               
               Conread position:56-274
               
               
               Cow position:chr9:35850192-35849980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):158, 39

               
               
               Conread position:57-264
               
               
               Cow position:chr9:64516804-64517010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):150, 35

               
               
               Conread position:57-285
               
               
               Cow position:chr9:31777398-31777622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):217, 137

               
               
               Conread position:58-215
               
               
               Cow position:chr9:5400008-5399858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:59-228
               
               
               Cow position:chr9:51557065-51557241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:59-242
               
               
               Cow position:chr9:18343013-18342836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):163, 44

               
               
               Conread position:59-274
               
               
               Cow position:chr9:1984231-1984449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:59-274
               
               
               Cow position:chr9:34468302-34468504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:60-212
               
               
               Cow position:chr9:15054168-15054019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:60-242
               
               
               Cow position:chr9:9416117-9416293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):148, 98

               
               
               Conread position:60-296
               
               
               Cow position:chr9:8338320-8338084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):205, 148

               
               
               Conread position:62-224
               
               
               Cow position:chr9:13993952-13993791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:62-262
               
               
               Cow position:chr9:60037943-60037745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:62-265
               
               
               Cow position:chr9:3070135-3070332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):146, 104

               
               
               Conread position:62-273
               
               
               Cow position:chr9:8599891-8599681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):152, 91

               
               
               Conread position:62-286
               
               
               Cow position:chr9:17634543-17634769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):150, 185

               
               
               Conread position:63-241
               
               
               Cow position:chr9:13670924-13670745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:63-242
               
               
               Cow position:chr9:18072831-18073002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):154, 42

               
               
               Conread position:64-265
               
               
               Cow position:chr9:59794994-59795199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):154, 56

               
               
               Conread position:64-304
               
               
               Cow position:chr9:10144186-10144432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):139, 145

               
               
               Conread position:64-323
               
               
               Cow position:chr9:59013049-59013309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):158, 85

               
               
               Conread position:65-242
               
               
               Cow position:chr9:31626434-31626258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):155, 136

               
               
               Conread position:65-257
               
               
               Cow position:chr9:51205006-51204817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:66-209
               
               
               Cow position:chr9:3762641-3762495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:66-265
               
               
               Cow position:chr9:24997232-24997431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 56

               
               
               Conread position:67-269
               
               
               Cow position:chr9:26086350-26086146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):138, 156

               
               
               Conread position:68-322
               
               
               Cow position:chr9:10877584-10877843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):140, 97

               
               
               Conread position:69-238
               
               
               Cow position:chr9:5756722-5756884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:69-241
               
               
               Cow position:chr9:41773089-41773262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):113, 125

               
               
               Conread position:69-242
               
               
               Cow position:chr9:1751616-1751449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:69-265
               
               
               Cow position:chr9:6225166-6225365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 100

               
               
               Conread position:69-265
               
               
               Cow position:chr9:37069288-37069481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):151, 94

               
               
               Conread position:69-298
               
               
               Cow position:chr9:5532233-5532001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:70-265
               
               
               Cow position:chr9:24887477-24887288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):142, 34

               
               
               Conread position:70-296
               
               
               Cow position:chr9:55287611-55287837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 154

               
               
               Conread position:71-265
               
               
               Cow position:chr9:30749306-30749498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):137, 86

               
               
               Conread position:73-265
               
               
               Cow position:chr9:4128506-4128695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:76-265
               
               
               Cow position:chr9:32732411-32732600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:78-265
               
               
               Cow position:chr9:47869278-47869097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:78-266
               
               
               Cow position:chr9:55118350-55118167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):136, 44

               
               
               Conread position:81-274
               
               
               Cow position:chr9:41653058-41652862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 127

               
               
               Conread position:82-265
               
               
               Cow position:chr9:8563109-8562926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):138, 126

               
               
               Conread position:82-265
               
               
               Cow position:chr9:33598249-33598069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):138, 84

               
               
               Conread position:82-298
               
               
               Cow position:chr9:41995982-41995762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:83-274
               
               
               Cow position:chr9:8546585-8546397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):137, 83

               
               
               Conread position:91-274
               
               
               Cow position:chr9:38875315-38875500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:96-265
               
               
               Cow position:chr9:58979655-58979486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):117, 125

               
               
               Conread position:105-258
               
               
               Cow position:chr9:33119637-33119790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 103
Show alignments to all cow chromosomes.