Cow genome map
| Conread name: | Ss1.1-rcbe05_f3.5 |
| Conread position: | 215-430 |
| Cow position: | chr12:26295050-26294828 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 13 |
| Conread position: | 215-433 |
| Cow position: | chr12:8019655-8019884 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 169 |
| Conread position: | 215-433 |
| Cow position: | chr12:40648023-40648246 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 215-436 |
| Cow position: | chr12:14579827-14579596 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 73, 192 |
| Conread position: | 215-436 |
| Cow position: | chr12:37516292-37516060 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 216-369 |
| Cow position: | chr12:36137854-36137698 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 216-406 |
| Cow position: | chr12:39147270-39147068 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 216-417 |
| Cow position: | chr12:5901446-5901659 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 175 |
| Conread position: | 216-418 |
| Cow position: | chr12:488288-488498 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 216-425 |
| Cow position: | chr12:6461818-6461600 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 216-425 |
| Cow position: | chr12:27353558-27353347 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 87 |
| Conread position: | 216-427 |
| Cow position: | chr12:2447206-2446991 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 155 |
| Conread position: | 216-430 |
| Cow position: | chr12:2978068-2977855 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 127, 56 |
| Conread position: | 216-431 |
| Cow position: | chr12:4782091-4781868 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 216-431 |
| Cow position: | chr12:37893520-37893755 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 216-432 |
| Cow position: | chr12:34515893-34515662 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 216-433 |
| Cow position: | chr12:6664619-6664390 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 216-433 |
| Cow position: | chr12:12877014-12876800 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 216-433 |
| Cow position: | chr12:19453723-19453955 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 216-433 |
| Cow position: | chr12:25531698-25531933 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 216-433 |
| Cow position: | chr12:34414606-34414833 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 189 |
| Conread position: | 216-434 |
| Cow position: | chr12:3705746-3705970 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 216-436 |
| Cow position: | chr12:14812457-14812676 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 216-436 |
| Cow position: | chr12:16610356-16610584 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 216-436 |
| Cow position: | chr12:17322609-17322834 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 216-436 |
| Cow position: | chr12:22213774-22213542 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 216-436 |
| Cow position: | chr12:27387862-27388092 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 216-436 |
| Cow position: | chr12:34788743-34788511 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 216-436 |
| Cow position: | chr12:40284046-40284276 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 216-436 |
| Cow position: | chr12:41202809-41202576 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 216-446 |
| Cow position: | chr12:30031730-30031492 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 216-452 |
| Cow position: | chr12:37114473-37114228 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 203 |
| Conread position: | 216-455 |
| Cow position: | chr12:16401731-16401971 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 216-470 |
| Cow position: | chr12:20254379-20254643 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 216-471 |
| Cow position: | chr12:20107673-20107418 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 216-534 |
| Cow position: | chr12:5762959-5763300 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 70, 259 |
| Conread position: | 216-540 |
| Cow position: | chr12:15831077-15830736 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 120 |
| Conread position: | 216-540 |
| Cow position: | chr12:38344358-38344025 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 216-540 |
| Cow position: | chr12:40229958-40229624 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 217-436 |
| Cow position: | chr12:28429371-28429140 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 217-444 |
| Cow position: | chr12:42565462-42565698 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 217-457 |
| Cow position: | chr12:25868447-25868698 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 217-533 |
| Cow position: | chr12:9252735-9253063 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 217-539 |
| Cow position: | chr12:4831475-4831799 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 218-435 |
| Cow position: | chr12:19221554-19221325 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 107 |
| Conread position: | 218-444 |
| Cow position: | chr12:1330994-1331230 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 218-520 |
| Cow position: | chr12:17782835-17782516 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 219-401 |
| Cow position: | chr12:27563728-27563543 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 120 |
| Conread position: | 219-432 |
| Cow position: | chr12:8168446-8168667 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 219-436 |
| Cow position: | chr12:8874689-8874460 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 219-436 |
| Cow position: | chr12:45040044-45040271 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 199 |
| Conread position: | 219-539 |
| Cow position: | chr12:40248290-40248632 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 71, 196 |
| Conread position: | 220-425 |
| Cow position: | chr12:28841635-28841842 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 220-427 |
| Cow position: | chr12:45617442-45617236 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 220-436 |
| Cow position: | chr12:20640699-20640483 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 220-539 |
| Cow position: | chr12:26192420-26192097 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 222-540 |
| Cow position: | chr12:34490889-34490573 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 220 |
| Conread position: | 223-436 |
| Cow position: | chr12:24538006-24538222 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 141 |
| Conread position: | 225-429 |
| Cow position: | chr12:3840489-3840694 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 232-540 |
| Cow position: | chr12:6118961-6118635 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 238-432 |
| Cow position: | chr12:7325918-7325714 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 148 |
| Conread position: | 239-540 |
| Cow position: | chr12:18003226-18002907 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 240-433 |
| Cow position: | chr12:13225332-13225527 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 241-436 |
| Cow position: | chr12:3828417-3828623 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 197 |
| Conread position: | 243-452 |
| Cow position: | chr12:5506671-5506454 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 246-432 |
| Cow position: | chr12:28828562-28828756 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 37, 139 |
| Conread position: | 249-433 |
| Cow position: | chr12:36960936-36960743 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 252-540 |
| Cow position: | chr12:18781799-18782094 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 256-529 |
| Cow position: | chr12:11506289-11506566 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 260-540 |
| Cow position: | chr12:4795777-4795482 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 179 |
| Conread position: | 271-539 |
| Cow position: | chr12:23787060-23786785 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 292-533 |
| Cow position: | chr12:16842801-16842556 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 298-420 |
| Cow position: | chr12:7136923-7136799 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 300-433 |
| Cow position: | chr12:3075517-3075384 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-436 |
| Cow position: | chr12:40172212-40172075 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 301-436 |
| Cow position: | chr12:30570598-30570735 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 303-437 |
| Cow position: | chr12:42194192-42194329 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 304-436 |
| Cow position: | chr12:35303409-35303538 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 57 |
Show alignments to all cow chromosomes.