Cow genome map

Conread name: Ss1.1-rcbe05_f3.5

Conread position: 42-218
Cow position: chr20:35704723-35704546 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 12

Conread position: 211-428
Cow position: chr20:17929840-17930070 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 211-444
Cow position: chr20:26567606-26567371 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 49

Conread position: 212-432
Cow position: chr20:26793746-26793518 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 5, 57

Conread position: 214-444
Cow position: chr20:12791862-12792100 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 15, 32

Conread position: 214-539
Cow position: chr20:3160020-3160364 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 74, 247

Conread position: 215-432
Cow position: chr20:8596583-8596813 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 215-434
Cow position: chr20:25582327-25582556 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 184

Conread position: 215-436
Cow position: chr20:11719066-11718829 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 77, 230

Conread position: 215-436
Cow position: chr20:20068073-20068297 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 40

Conread position: 215-437
Cow position: chr20:17479652-17479425 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 73, 144

Conread position: 215-437
Cow position: chr20:17685227-17685458 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 74, 41

Conread position: 215-442
Cow position: chr20:21270208-21269978 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 39

Conread position: 216-368
Cow position: chr20:5362871-5362710 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 38

Conread position: 216-397
Cow position: chr20:10061989-10061806 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 80, 53

Conread position: 216-400
Cow position: chr20:5787135-5787332 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 36

Conread position: 216-409
Cow position: chr20:10497473-10497274 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 72, 137

Conread position: 216-411
Cow position: chr20:4706422-4706218 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 216-425
Cow position: chr20:33349076-33348871 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 14

Conread position: 216-431
Cow position: chr20:8718851-8719073 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 77, 12

Conread position: 216-431
Cow position: chr20:25817979-25818196 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 111

Conread position: 216-432
Cow position: chr20:1533430-1533207 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 105

Conread position: 216-433
Cow position: chr20:1049914-1049686 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 72, 141

Conread position: 216-433
Cow position: chr20:13589260-13589483 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 164

Conread position: 216-433
Cow position: chr20:24945982-24945757 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 169

Conread position: 216-433
Cow position: chr20:34311892-34312120 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 174

Conread position: 216-434
Cow position: chr20:13415653-13415868 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 73, 78

Conread position: 216-434
Cow position: chr20:26313508-26313281 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 107

Conread position: 216-435
Cow position: chr20:13063830-13064057 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 69, 175

Conread position: 216-436
Cow position: chr20:2178387-2178155 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 216-436
Cow position: chr20:5782489-5782722 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 36

Conread position: 216-436
Cow position: chr20:5892127-5891902 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 137

Conread position: 216-436
Cow position: chr20:8093171-8092937 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 39

Conread position: 216-436
Cow position: chr20:23142879-23142651 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 74, 39

Conread position: 216-439
Cow position: chr20:12575526-12575291 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 72, 104

Conread position: 216-447
Cow position: chr20:6396512-6396272 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 39

Conread position: 216-449
Cow position: chr20:23122274-23122500 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 75, 0

Conread position: 216-457
Cow position: chr20:22953694-22953442 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 72, 14

Conread position: 216-487
Cow position: chr20:34407276-34407004 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 38

Conread position: 216-526
Cow position: chr20:42282908-42283231 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 274

Conread position: 216-536
Cow position: chr20:8661663-8661999 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 91

Conread position: 216-536
Cow position: chr20:26343513-26343850 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 237
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 28

Conread position: 216-539
Cow position: chr20:27002469-27002796 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 224
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 39

Conread position: 216-540
Cow position: chr20:2946115-2946452 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 12

Conread position: 216-540
Cow position: chr20:3446354-3446697 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 128, 58

Conread position: 216-540
Cow position: chr20:6849774-6849442 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 40

Conread position: 216-540
Cow position: chr20:13710866-13710536 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 99, 39

Conread position: 216-540
Cow position: chr20:24697291-24697623 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 45, 203

Conread position: 217-436
Cow position: chr20:5805005-5804776 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 38

Conread position: 217-438
Cow position: chr20:30181824-30182049 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 71, 114

Conread position: 217-442
Cow position: chr20:8220035-8219802 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 37

Conread position: 217-537
Cow position: chr20:6631657-6631972 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 153, 12

Conread position: 218-398
Cow position: chr20:27331970-27331780 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 218-425
Cow position: chr20:27195510-27195729 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 218-432
Cow position: chr20:35717592-35717365 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 218-435
Cow position: chr20:26494570-26494795 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 72, 37

Conread position: 218-436
Cow position: chr20:28607746-28607516 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 218-440
Cow position: chr20:23066641-23066413 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 74, 112

Conread position: 218-536
Cow position: chr20:27405217-27404912 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 222, 59

Conread position: 219-433
Cow position: chr20:26787103-26786881 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 70, 200

Conread position: 219-433
Cow position: chr20:34095582-34095808 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 219-436
Cow position: chr20:3388809-3388590 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 70, 36

Conread position: 220-436
Cow position: chr20:5676206-5676420 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 120, 52

Conread position: 221-436
Cow position: chr20:9290019-9289806 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 81, 18

Conread position: 221-540
Cow position: chr20:34287371-34287717 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 235
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 16, 341

Conread position: 223-436
Cow position: chr20:34939075-34938850 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 224-428
Cow position: chr20:5197694-5197479 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 31

Conread position: 224-431
Cow position: chr20:6523467-6523672 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 51, 97

Conread position: 224-433
Cow position: chr20:12196315-12196094 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 42, 187

Conread position: 224-526
Cow position: chr20:27442056-27441734 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 17, 287

Conread position: 226-433
Cow position: chr20:8476280-8476504 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 10

Conread position: 227-538
Cow position: chr20:24831309-24830974 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 227
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 74, 148

Conread position: 230-430
Cow position: chr20:5903510-5903302 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 0

Conread position: 230-436
Cow position: chr20:5726182-5726400 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 24

Conread position: 230-449
Cow position: chr20:23838111-23837880 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 232-431
Cow position: chr20:40061934-40062134 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 56

Conread position: 234-524
Cow position: chr20:2553036-2552729 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 205
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 271

Conread position: 242-539
Cow position: chr20:32687308-32687606 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 198
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 15

Conread position: 255-449
Cow position: chr20:701997-701793 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 34, 176

Conread position: 258-538
Cow position: chr20:28540807-28541084 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 85

Conread position: 300-537
Cow position: chr20:26402356-26402109 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 301-472
Cow position: chr20:36134669-36134840 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 139

Conread position: 302-433
Cow position: chr20:9269501-9269633 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 83

Conread position: 312-540
Cow position: chr20:26319271-26319038 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 159
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 31, 195

Conread position: 332-540
Cow position: chr20:7967534-7967746 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 122

Show alignments to all cow chromosomes.