Cow genome map
| Conread name: | Ss1.1-rcbe05_f3.5 |
| Conread position: | 212-539 |
| Cow position: | chr26:14399300-14398949 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 215-402 |
| Cow position: | chr26:20248325-20248522 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 215-432 |
| Cow position: | chr26:16974893-16975116 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 84 |
| Conread position: | 215-433 |
| Cow position: | chr26:28539938-28539713 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 215-442 |
| Cow position: | chr26:8265215-8265451 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 215-539 |
| Cow position: | chr26:28997255-28996921 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 49, 228 |
| Conread position: | 215-540 |
| Cow position: | chr26:12993188-12993521 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 77, 141 |
| Conread position: | 215-540 |
| Cow position: | chr26:19640030-19640372 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 215-540 |
| Cow position: | chr26:25207525-25207179 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 215-540 |
| Cow position: | chr26:25367216-25367549 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 126, 70 |
| Conread position: | 215-540 |
| Cow position: | chr26:26063680-26063349 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 128, 162 |
| Conread position: | 216-399 |
| Cow position: | chr26:28662528-28662336 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 216-409 |
| Cow position: | chr26:30585431-30585232 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 138 |
| Conread position: | 216-411 |
| Cow position: | chr26:28961739-28961536 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 216-427 |
| Cow position: | chr26:22741662-22741878 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 216-430 |
| Cow position: | chr26:21691429-21691219 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 216-432 |
| Cow position: | chr26:17586897-17586667 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 216-433 |
| Cow position: | chr26:7898950-7898724 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 216-433 |
| Cow position: | chr26:13344035-13343804 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 216-433 |
| Cow position: | chr26:25477771-25477990 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 77, 163 |
| Conread position: | 216-434 |
| Cow position: | chr26:19082457-19082679 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 216-434 |
| Cow position: | chr26:35147732-35147505 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 72, 171 |
| Conread position: | 216-435 |
| Cow position: | chr26:16486042-16486272 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 216-436 |
| Cow position: | chr26:6736574-6736806 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 216-436 |
| Cow position: | chr26:7521980-7521754 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 216-436 |
| Cow position: | chr26:9494054-9493824 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 216-436 |
| Cow position: | chr26:23930727-23930496 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 216-437 |
| Cow position: | chr26:15214922-15215155 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 216-439 |
| Cow position: | chr26:16151581-16151801 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 216-444 |
| Cow position: | chr26:13163293-13163060 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 216-446 |
| Cow position: | chr26:5774169-5774410 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 72, 198 |
| Conread position: | 216-458 |
| Cow position: | chr26:4193732-4193474 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 216-479 |
| Cow position: | chr26:17538909-17539185 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 28 |
| Conread position: | 216-480 |
| Cow position: | chr26:13521835-13521575 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 73, 88 |
| Conread position: | 216-526 |
| Cow position: | chr26:11959945-11959623 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 76, 157 |
| Conread position: | 216-536 |
| Cow position: | chr26:3208314-3208637 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 216-538 |
| Cow position: | chr26:5191157-5190817 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 216-538 |
| Cow position: | chr26:16724188-16723844 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 18, 167 |
| Conread position: | 216-538 |
| Cow position: | chr26:24027136-24027471 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 216-539 |
| Cow position: | chr26:21638871-21638552 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 123, 60 |
| Conread position: | 216-540 |
| Cow position: | chr26:231467-231146 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 101, 17 |
| Conread position: | 216-540 |
| Cow position: | chr26:8548236-8547903 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 216-540 |
| Cow position: | chr26:9245558-9245883 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 72, 162 |
| Conread position: | 216-540 |
| Cow position: | chr26:11963031-11963374 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 72, 295 |
| Conread position: | 216-540 |
| Cow position: | chr26:14438355-14438020 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 216-540 |
| Cow position: | chr26:15440264-15439920 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 112 |
| Conread position: | 216-540 |
| Cow position: | chr26:19861756-19862082 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 216-540 |
| Cow position: | chr26:32876087-32876417 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 217-429 |
| Cow position: | chr26:4108339-4108546 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 217-433 |
| Cow position: | chr26:15624343-15624115 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 217-436 |
| Cow position: | chr26:20134077-20134309 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 217-535 |
| Cow position: | chr26:10599419-10599087 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 71, 222 |
| Conread position: | 219-437 |
| Cow position: | chr26:11788583-11788809 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 70, 135 |
| Conread position: | 220-432 |
| Cow position: | chr26:32850802-32850579 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 36, 170 |
| Conread position: | 220-433 |
| Cow position: | chr26:22755195-22754981 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 220-447 |
| Cow position: | chr26:7307916-7308151 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 222-432 |
| Cow position: | chr26:16784835-16785056 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 223-435 |
| Cow position: | chr26:28484107-28484331 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 225-433 |
| Cow position: | chr26:13368168-13367961 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 225-530 |
| Cow position: | chr26:27832739-27833064 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 230-416 |
| Cow position: | chr26:16818824-16818635 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 231-436 |
| Cow position: | chr26:8438024-8437811 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 179 |
| Conread position: | 236-436 |
| Cow position: | chr26:26313982-26314183 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 237-540 |
| Cow position: | chr26:25555607-25555297 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 240-442 |
| Cow position: | chr26:22351887-22351677 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 240-540 |
| Cow position: | chr26:7603302-7602990 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 116 |
| Conread position: | 242-433 |
| Cow position: | chr26:23212596-23212793 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 245-434 |
| Cow position: | chr26:12032896-12032695 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 16, 137 |
| Conread position: | 260-539 |
| Cow position: | chr26:10124046-10123749 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 127 |
| Conread position: | 263-424 |
| Cow position: | chr26:19132605-19132775 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 277-540 |
| Cow position: | chr26:8171296-8171562 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 291-539 |
| Cow position: | chr26:21659477-21659734 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 147, 79 |
| Conread position: | 294-520 |
| Cow position: | chr26:20946932-20946707 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 144, 70 |
| Conread position: | 296-540 |
| Cow position: | chr26:16612323-16612579 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 297-538 |
| Cow position: | chr26:16619088-16619335 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 205 |
| Conread position: | 300-536 |
| Cow position: | chr26:19328180-19328427 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 300-538 |
| Cow position: | chr26:11629551-11629798 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 300-540 |
| Cow position: | chr26:25086196-25085942 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 302-437 |
| Cow position: | chr26:25700930-25700791 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 302-540 |
| Cow position: | chr26:19859293-19859546 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 303-436 |
| Cow position: | chr26:15347294-15347163 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 309-539 |
| Cow position: | chr26:17574194-17574420 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 135, 36 |
| Conread position: | 314-444 |
| Cow position: | chr26:9526100-9526229 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 314-539 |
| Cow position: | chr26:8229768-8230000 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 318-436 |
| Cow position: | chr26:12541867-12541746 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.