Cow genome map

Conread name: Ss1.1-rcbe05_f3.5

Conread position: 4-215
Cow position: chr28:735898-736110 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 60

Conread position: 5-214
Cow position: chr28:19226166-19226374 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 148, 19

Conread position: 215-433
Cow position: chr28:2140223-2140445 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 73

Conread position: 215-433
Cow position: chr28:7603479-7603250 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 74, 40

Conread position: 215-433
Cow position: chr28:27130535-27130309 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 77, 40

Conread position: 215-436
Cow position: chr28:22891662-22891441 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 110

Conread position: 215-439
Cow position: chr28:13907383-13907610 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 88

Conread position: 215-537
Cow position: chr28:22610280-22610618 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 71, 39

Conread position: 215-540
Cow position: chr28:19373443-19373103 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 240
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 134

Conread position: 215-540
Cow position: chr28:27028948-27028606 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 147

Conread position: 216-397
Cow position: chr28:3144197-3144013 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 40

Conread position: 216-409
Cow position: chr28:17206995-17207198 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 72, 45

Conread position: 216-411
Cow position: chr28:24215577-24215786 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 216-417
Cow position: chr28:24226562-24226776 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 123

Conread position: 216-432
Cow position: chr28:3871410-3871628 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 76, 25

Conread position: 216-433
Cow position: chr28:5434046-5433821 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 40

Conread position: 216-434
Cow position: chr28:21630875-21631093 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 17

Conread position: 216-434
Cow position: chr28:23020905-23020678 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 167

Conread position: 216-434
Cow position: chr28:34573780-34574004 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 39

Conread position: 216-435
Cow position: chr28:7313935-7313725 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 127, 12

Conread position: 216-435
Cow position: chr28:10299856-10299637 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 75, 70

Conread position: 216-435
Cow position: chr28:15258742-15258516 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 73, 54

Conread position: 216-435
Cow position: chr28:17379159-17378933 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 137
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 68, 124

Conread position: 216-435
Cow position: chr28:27331090-27331314 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 73, 28

Conread position: 216-436
Cow position: chr28:9917367-9917144 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 216-436
Cow position: chr28:11533180-11533412 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 45, 9

Conread position: 216-436
Cow position: chr28:13179080-13179308 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 65, 146

Conread position: 216-436
Cow position: chr28:14925729-14925495 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 0

Conread position: 216-436
Cow position: chr28:19340648-19340423 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 72, 40

Conread position: 216-436
Cow position: chr28:20899308-20899078 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 163

Conread position: 216-436
Cow position: chr28:22359247-22359474 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 74, 38

Conread position: 216-436
Cow position: chr28:22488626-22488846 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 25

Conread position: 216-436
Cow position: chr28:23903926-23904138 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 127, 30

Conread position: 216-436
Cow position: chr28:30077572-30077801 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 73, 39

Conread position: 216-446
Cow position: chr28:30435375-30435135 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 216-455
Cow position: chr28:11025383-11025126 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 216-461
Cow position: chr28:16769280-16769530 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 73, 79

Conread position: 216-468
Cow position: chr28:9083931-9084195 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 216-521
Cow position: chr28:4386006-4385698 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 69, 29

Conread position: 216-523
Cow position: chr28:20773933-20773615 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 65, 24

Conread position: 216-524
Cow position: chr28:21618448-21618774 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 72, 279

Conread position: 216-526
Cow position: chr28:4195212-4195540 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 74, 111

Conread position: 216-533
Cow position: chr28:4023691-4024016 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 223
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 73, 261

Conread position: 216-535
Cow position: chr28:22471591-22471270 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 68, 22

Conread position: 216-537
Cow position: chr28:4441175-4441496 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 72, 28

Conread position: 216-538
Cow position: chr28:606791-607129 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 221
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 73, 33

Conread position: 216-538
Cow position: chr28:2993500-2993174 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 224
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 105

Conread position: 216-539
Cow position: chr28:11536449-11536781 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 216
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 180

Conread position: 216-539
Cow position: chr28:22273138-22272826 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 73, 165

Conread position: 216-539
Cow position: chr28:24337808-24337468 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 39

Conread position: 216-539
Cow position: chr28:34009707-34010054 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 237
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 76, 205

Conread position: 216-540
Cow position: chr28:4639635-4639312 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 221, 55

Conread position: 216-540
Cow position: chr28:20147747-20148086 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 230
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 38

Conread position: 216-540
Cow position: chr28:20942023-20941685 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 224
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 127, 76

Conread position: 216-540
Cow position: chr28:22807023-22807360 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 236
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 57, 40

Conread position: 216-540
Cow position: chr28:23096943-23097286 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 230
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 73, 33

Conread position: 217-433
Cow position: chr28:527197-527416 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 71, 8

Conread position: 217-436
Cow position: chr28:25912904-25912688 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 72, 44

Conread position: 217-538
Cow position: chr28:1571026-1571361 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 72, 143

Conread position: 217-538
Cow position: chr28:24350117-24350431 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 75, 23

Conread position: 217-538
Cow position: chr28:27885734-27885393 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 71, 38

Conread position: 217-539
Cow position: chr28:24318092-24317754 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 32

Conread position: 217-540
Cow position: chr28:34563308-34562981 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 126, 70

Conread position: 218-540
Cow position: chr28:31176838-31177179 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 227
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 37

Conread position: 219-398
Cow position: chr28:10867603-10867794 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 42, 35

Conread position: 219-429
Cow position: chr28:23291735-23291517 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 70, 36

Conread position: 219-433
Cow position: chr28:22270047-22270272 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 219-433
Cow position: chr28:32633484-32633264 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 42, 35

Conread position: 220-529
Cow position: chr28:31356295-31356617 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 257

Conread position: 220-533
Cow position: chr28:9126495-9126165 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 68, 305

Conread position: 223-431
Cow position: chr28:19360544-19360323 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 29

Conread position: 223-436
Cow position: chr28:11602046-11601823 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 40, 31

Conread position: 223-537
Cow position: chr28:22668518-22668850 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 68, 131

Conread position: 225-408
Cow position: chr28:23281521-23281330 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 63, 162

Conread position: 226-539
Cow position: chr28:23833623-23833937 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 214
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 219, 78

Conread position: 229-398
Cow position: chr28:11584919-11584738 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 25

Conread position: 230-432
Cow position: chr28:4164122-4163907 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 20

Conread position: 232-436
Cow position: chr28:676898-676684 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 57, 199

Conread position: 233-436
Cow position: chr28:25043340-25043133 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 100

Conread position: 235-433
Cow position: chr28:19467024-19467211 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 241-442
Cow position: chr28:2168772-2168558 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 241-538
Cow position: chr28:23919107-23918801 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 212
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 21, 13

Conread position: 247-435
Cow position: chr28:32278060-32278258 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 42, 139

Conread position: 257-444
Cow position: chr28:10602010-10602208 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 28, 70

Conread position: 260-540
Cow position: chr28:4826352-4826070 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 29, 86

Conread position: 262-412
Cow position: chr28:4500005-4500160 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 266-529
Cow position: chr28:13366134-13366407 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 190
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 87

Conread position: 289-538
Cow position: chr28:16195594-16195349 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 110, 11

Conread position: 291-436
Cow position: chr28:11101674-11101533 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 294-433
Cow position: chr28:23688593-23688452 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 94

Conread position: 296-538
Cow position: chr28:25139164-25138919 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 141, 170

Conread position: 297-526
Cow position: chr28:11078381-11078615 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 197

Conread position: 300-433
Cow position: chr28:26392412-26392548 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 300-436
Cow position: chr28:11859616-11859752 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 300-437
Cow position: chr28:10465795-10465926 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 300-446
Cow position: chr28:25819285-25819426 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 301-537
Cow position: chr28:22843455-22843705 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 303-444
Cow position: chr28:19731448-19731303 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 303-540
Cow position: chr28:27680011-27680250 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 40, 166

Conread position: 318-536
Cow position: chr28:3562629-3562853 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 126, 26

Show alignments to all cow chromosomes.