Cow genome map
| Conread name: | Ss1.1-rcbe05_f3.5 |
| Conread position: | 199-399 |
| Cow position: | chr29:15259237-15259030 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 208-430 |
| Cow position: | chr29:36007544-36007778 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 211-539 |
| Cow position: | chr29:36517906-36518237 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 212-442 |
| Cow position: | chr29:33091675-33091899 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 214-354 |
| Cow position: | chr29:31542092-31541944 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 214-429 |
| Cow position: | chr29:8825900-8826121 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 215-434 |
| Cow position: | chr29:32953971-32954191 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 215-434 |
| Cow position: | chr29:35104046-35103821 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 215-443 |
| Cow position: | chr29:27941174-27941410 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 215-446 |
| Cow position: | chr29:29001018-29000782 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 215-536 |
| Cow position: | chr29:13046169-13046505 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 216-397 |
| Cow position: | chr29:1582942-1582751 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 216-397 |
| Cow position: | chr29:16657374-16657560 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 216-427 |
| Cow position: | chr29:12292592-12292375 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 216-427 |
| Cow position: | chr29:13095408-13095628 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 216-429 |
| Cow position: | chr29:15315443-15315661 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 168 |
| Conread position: | 216-431 |
| Cow position: | chr29:4103500-4103280 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 146 |
| Conread position: | 216-431 |
| Cow position: | chr29:20971108-20970888 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 216-432 |
| Cow position: | chr29:43551666-43551441 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 160 |
| Conread position: | 216-433 |
| Cow position: | chr29:20615624-20615842 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 216-433 |
| Cow position: | chr29:26216840-26217065 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 216-434 |
| Cow position: | chr29:20642403-20642626 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 73, 164 |
| Conread position: | 216-436 |
| Cow position: | chr29:2564385-2564609 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 216-436 |
| Cow position: | chr29:5636644-5636872 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 216-436 |
| Cow position: | chr29:9511291-9511060 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 216-436 |
| Cow position: | chr29:23541579-23541347 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 216-436 |
| Cow position: | chr29:44598140-44597909 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 216-442 |
| Cow position: | chr29:19635774-19635539 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 216-449 |
| Cow position: | chr29:24266180-24266415 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 134 |
| Conread position: | 216-458 |
| Cow position: | chr29:30516086-30515835 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 216-462 |
| Cow position: | chr29:16939690-16939943 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 164 |
| Conread position: | 216-517 |
| Cow position: | chr29:36727576-36727881 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 55 |
| Conread position: | 216-520 |
| Cow position: | chr29:31960203-31960514 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 129, 52 |
| Conread position: | 216-520 |
| Cow position: | chr29:39443930-39443617 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 53 |
| Conread position: | 216-536 |
| Cow position: | chr29:40137435-40137100 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 69, 329 |
| Conread position: | 216-539 |
| Cow position: | chr29:30193433-30193103 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 124 |
| Conread position: | 216-540 |
| Cow position: | chr29:1600099-1599755 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 216-540 |
| Cow position: | chr29:12968126-12967785 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 37, 150 |
| Conread position: | 216-540 |
| Cow position: | chr29:19547202-19546866 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 216-540 |
| Cow position: | chr29:19564836-19564486 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 197 |
| Conread position: | 216-540 |
| Cow position: | chr29:36323960-36324287 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 217-410 |
| Cow position: | chr29:18980082-18979885 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 217-430 |
| Cow position: | chr29:36296462-36296243 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 217-527 |
| Cow position: | chr29:33123463-33123774 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 116 |
| Conread position: | 218-436 |
| Cow position: | chr29:26968650-26968875 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 218-465 |
| Cow position: | chr29:31906189-31906449 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 218-540 |
| Cow position: | chr29:37068652-37068973 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 218-540 |
| Cow position: | chr29:38476969-38477296 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 219-432 |
| Cow position: | chr29:9463017-9462797 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 220-415 |
| Cow position: | chr29:25348504-25348702 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 131 |
| Conread position: | 220-539 |
| Cow position: | chr29:22610683-22610999 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 50, 84 |
| Conread position: | 222-419 |
| Cow position: | chr29:22443086-22443294 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 222-439 |
| Cow position: | chr29:33128489-33128716 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 225-433 |
| Cow position: | chr29:19596555-19596340 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 225-442 |
| Cow position: | chr29:34332491-34332263 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 226-540 |
| Cow position: | chr29:30492869-30493168 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 234-518 |
| Cow position: | chr29:37675524-37675222 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 237-540 |
| Cow position: | chr29:6803469-6803149 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 150 |
| Conread position: | 240-391 |
| Cow position: | chr29:21520460-21520309 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 240-431 |
| Cow position: | chr29:12015381-12015583 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 49, 101 |
| Conread position: | 241-415 |
| Cow position: | chr29:324047-323862 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 135 |
| Conread position: | 241-433 |
| Cow position: | chr29:37557632-37557831 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 241-540 |
| Cow position: | chr29:44419132-44419438 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 244-540 |
| Cow position: | chr29:13022158-13022474 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 245-540 |
| Cow position: | chr29:19664457-19664757 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 250-540 |
| Cow position: | chr29:34337948-34337635 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 271 |
| Conread position: | 256-540 |
| Cow position: | chr29:5388200-5387896 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 271 |
| Conread position: | 264-539 |
| Cow position: | chr29:4760431-4760716 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 294-536 |
| Cow position: | chr29:34427170-34426921 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 296-436 |
| Cow position: | chr29:31377165-31377305 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 297-437 |
| Cow position: | chr29:9507003-9506863 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-433 |
| Cow position: | chr29:19616473-19616340 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 300-441 |
| Cow position: | chr29:31156412-31156270 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 300-537 |
| Cow position: | chr29:28190259-28190018 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 169 |
| Conread position: | 304-430 |
| Cow position: | chr29:7341538-7341666 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 304-539 |
| Cow position: | chr29:31362445-31362206 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 309-423 |
| Cow position: | chr29:16339972-16340086 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 310-539 |
| Cow position: | chr29:29622510-29622746 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.