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Cow genome map

           
Conread name:
           
Ss1.1-rcbe05_f3.5
        

               
Conread position:
               
172-401
               

               
Cow position:
               
chrX:46033053-46032816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 167
               

               
Conread position:
               
210-540
               

               
Cow position:
               
chrX:14297634-14297289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
211-409
               

               
Cow position:
               
chrX:18990094-18989884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
214-398
               

               
Cow position:
               
chrX:26277073-26276892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
214-436
               

               
Cow position:
               
chrX:29160529-29160760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
15, 162
               

               
Conread position:
               
214-539
               

               
Cow position:
               
chrX:33674115-33673775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
214-540
               

               
Cow position:
               
chrX:1394326-1394669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
35, 248
               

               
Conread position:
               
215-371
               

               
Cow position:
               
chrX:41106299-41106131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
215-393
               

               
Cow position:
               
chrX:19162922-19162734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
77, 40
               

               
Conread position:
               
215-418
               

               
Cow position:
               
chrX:15988124-15987910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
215-419
               

               
Cow position:
               
chrX:11373296-11373081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chrX:21217880-21217656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 170
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chrX:27950091-27950315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
215-432
               

               
Cow position:
               
chrX:117520-117295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
70, 200
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chrX:11799424-11799649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chrX:11917096-11917320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chrX:14120668-14120444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 138
               

               
Conread position:
               
215-434
               

               
Cow position:
               
chrX:8703265-8703035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chrX:5909787-5909557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 118
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chrX:15154703-15154927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 169
               

               
Conread position:
               
215-444
               

               
Cow position:
               
chrX:29871734-29871495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
215-527
               

               
Cow position:
               
chrX:25362105-25362422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 221
               

               
Conread position:
               
215-535
               

               
Cow position:
               
chrX:37905729-37906038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
233, 51
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chrX:41919596-41919925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 139
               

               
Conread position:
               
215-538
               

               
Cow position:
               
chrX:389218-389554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
215-538
               

               
Cow position:
               
chrX:11858125-11857788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
215-538
               

               
Cow position:
               
chrX:27419272-27418937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
46, 141
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chrX:304904-305248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 40
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chrX:11914265-11914609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
76, 295
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chrX:12102338-12101998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 181
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chrX:19807433-19807769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
74, 255
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chrX:23268474-23268139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chrX:42044258-42043916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
216-392
               

               
Cow position:
               
chrX:17082695-17082508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
216-392
               

               
Cow position:
               
chrX:25738769-25738957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
216-397
               

               
Cow position:
               
chrX:42084720-42084911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 71
               

               
Conread position:
               
216-403
               

               
Cow position:
               
chrX:19847273-19847073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
216-406
               

               
Cow position:
               
chrX:15304614-15304416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
216-409
               

               
Cow position:
               
chrX:13710458-13710655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
76, 139
               

               
Conread position:
               
216-411
               

               
Cow position:
               
chrX:10412275-10412071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
216-411
               

               
Cow position:
               
chrX:37148246-37148448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
216-416
               

               
Cow position:
               
chrX:11108416-11108210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 151
               

               
Conread position:
               
216-417
               

               
Cow position:
               
chrX:7103599-7103810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chrX:19595984-19596196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
216-423
               

               
Cow position:
               
chrX:15545608-15545819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 177
               

               
Conread position:
               
216-425
               

               
Cow position:
               
chrX:20970635-20970855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
216-426
               

               
Cow position:
               
chrX:28080721-28080941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
216-427
               

               
Cow position:
               
chrX:67731-67953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
216-427
               

               
Cow position:
               
chrX:27105175-27104959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
72, 150
               

               
Conread position:
               
216-429
               

               
Cow position:
               
chrX:22963118-22962895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
216-430
               

               
Cow position:
               
chrX:26288972-26288748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
216-431
               

               
Cow position:
               
chrX:46055315-46055542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chrX:5111703-5111479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chrX:7390068-7389840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
73, 83
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chrX:23192663-23192438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chrX:24006111-24005891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
216-433
               

               
Cow position:
               
chrX:20710905-20711120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
216-433
               

               
Cow position:
               
chrX:38705280-38705482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
216-433
               

               
Cow position:
               
chrX:39236731-39236955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
216-433
               

               
Cow position:
               
chrX:44228262-44228039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
216-435
               

               
Cow position:
               
chrX:508445-508213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
216-435
               

               
Cow position:
               
chrX:26878378-26878607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:165602-165834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 218
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:1655191-1655419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 153
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:5249959-5250177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:6629409-6629639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
70, 39
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:11904614-11904382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 228
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:13225931-13226164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:13363768-13363532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:18896705-18896477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:19649548-19649324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:20446446-20446215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:22136544-22136319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 154
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:23081004-23081232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:23238211-23238443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:23514760-23514529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
73, 219
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:23927461-23927231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:25150906-25151129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 159
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:32803165-32802951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:37128570-37128791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chrX:37576027-37576255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 165
               

               
Conread position:
               
216-437
               

               
Cow position:
               
chrX:19636621-19636850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
72, 145
               

               
Conread position:
               
216-437
               

               
Cow position:
               
chrX:41780688-41780476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
216-437
               

               
Cow position:
               
chrX:41818701-41818481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
216-438
               

               
Cow position:
               
chrX:28666259-28666025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
216-439
               

               
Cow position:
               
chrX:41689247-41689468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
127, 68
               

               
Conread position:
               
216-442
               

               
Cow position:
               
chrX:873658-873892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
216-442
               

               
Cow position:
               
chrX:48771539-48771762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
216-444
               

               
Cow position:
               
chrX:19918884-19918643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
216-444
               

               
Cow position:
               
chrX:41380358-41380138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
221, 96
               

               
Conread position:
               
216-446
               

               
Cow position:
               
chrX:37405673-37405910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
216-456
               

               
Cow position:
               
chrX:40253890-40254143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
216-467
               

               
Cow position:
               
chrX:1748396-1748653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
216-469
               

               
Cow position:
               
chrX:31955533-31955264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
216-477
               

               
Cow position:
               
chrX:27768591-27768317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
73, 46
               

               
Conread position:
               
216-478
               

               
Cow position:
               
chrX:23876407-23876134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 244
               

               
Conread position:
               
216-498
               

               
Cow position:
               
chrX:25924826-25924536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
72, 226
               

               
Conread position:
               
216-520
               

               
Cow position:
               
chrX:41305918-41305603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
70, 255
               

               
Conread position:
               
216-524
               

               
Cow position:
               
chrX:18769612-18769931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
216-526
               

               
Cow position:
               
chrX:43831888-43831583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
216-530
               

               
Cow position:
               
chrX:19540637-19540309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 138
               

               
Conread position:
               
216-534
               

               
Cow position:
               
chrX:31460544-31460874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
216-534
               

               
Cow position:
               
chrX:40549335-40549661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
58, 201
               

               
Conread position:
               
216-535
               

               
Cow position:
               
chrX:19741792-19741463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
216-537
               

               
Cow position:
               
chrX:2656761-2657094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 214
               

               
Conread position:
               
216-537
               

               
Cow position:
               
chrX:34435338-34434999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
72, 197
               

               
Conread position:
               
216-537
               

               
Cow position:
               
chrX:39952626-39952308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
217, 54
               

               
Conread position:
               
216-538
               

               
Cow position:
               
chrX:27647358-27647671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
216-538
               

               
Cow position:
               
chrX:42141916-42141590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
216-539
               

               
Cow position:
               
chrX:2790951-2791287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 96
               

               
Conread position:
               
216-539
               

               
Cow position:
               
chrX:11385277-11384934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 111
               

               
Conread position:
               
216-539
               

               
Cow position:
               
chrX:11908857-11908535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
216-539
               

               
Cow position:
               
chrX:29024160-29024502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
216-539
               

               
Cow position:
               
chrX:39463370-39463032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:4664906-4664551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:5507387-5507729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
72, 47
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:18459746-18459398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:19556720-19557059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:20445487-20445151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 306
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:20590689-20591038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 141
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:31839220-31839559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:33003967-33004308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
73, 187
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:33172247-33171906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 150
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:37949503-37949831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
127, 55
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:38391108-38390772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:39288457-39288118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
76, 184
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chrX:41235029-41235358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
228, 53
               

               
Conread position:
               
217-370
               

               
Cow position:
               
chrX:20767071-20767227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
217-433
               

               
Cow position:
               
chrX:11314781-11315004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 202
               

               
Conread position:
               
217-434
               

               
Cow position:
               
chrX:22076210-22075981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
217-436
               

               
Cow position:
               
chrX:29585757-29585983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 137
               

               
Conread position:
               
217-538
               

               
Cow position:
               
chrX:4431405-4431730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 229
               

               
Conread position:
               
217-538
               

               
Cow position:
               
chrX:43800335-43800001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
217-540
               

               
Cow position:
               
chrX:10088890-10089223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
217-540
               

               
Cow position:
               
chrX:11892880-11893223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
218-431
               

               
Cow position:
               
chrX:7809290-7809064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
218-432
               

               
Cow position:
               
chrX:24888419-24888196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
65, 156
               

               
Conread position:
               
218-448
               

               
Cow position:
               
chrX:12021987-12022225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 149
               

               
Conread position:
               
218-540
               

               
Cow position:
               
chrX:23484906-23485235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
65, 122
               

               
Conread position:
               
219-432
               

               
Cow position:
               
chrX:33672475-33672696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
219-434
               

               
Cow position:
               
chrX:23312141-23311914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
219-436
               

               
Cow position:
               
chrX:17969134-17968906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
219-436
               

               
Cow position:
               
chrX:27240450-27240681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
219-444
               

               
Cow position:
               
chrX:26745143-26744919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
220-433
               

               
Cow position:
               
chrX:37945922-37946143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
220-436
               

               
Cow position:
               
chrX:4499349-4499565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
220-436
               

               
Cow position:
               
chrX:12110941-12110712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
222-436
               

               
Cow position:
               
chrX:37231377-37231603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
223-409
               

               
Cow position:
               
chrX:25840829-25841025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
223-433
               

               
Cow position:
               
chrX:42906837-42907050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
223-433
               

               
Cow position:
               
chrX:42926360-42926138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
223-439
               

               
Cow position:
               
chrX:20335587-20335370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
224-421
               

               
Cow position:
               
chrX:13049723-13049528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
224-429
               

               
Cow position:
               
chrX:29010452-29010665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
225-432
               

               
Cow position:
               
chrX:908847-909062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
225-537
               

               
Cow position:
               
chrX:11713575-11713245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
225-538
               

               
Cow position:
               
chrX:36294852-36295162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
226-436
               

               
Cow position:
               
chrX:16345643-16345864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
228-540
               

               
Cow position:
               
chrX:8102918-8102600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
229-532
               

               
Cow position:
               
chrX:18941499-18941189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 138
               

               
Conread position:
               
230-447
               

               
Cow position:
               
chrX:19657156-19656923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
232-533
               

               
Cow position:
               
chrX:2256080-2255767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
233-416
               

               
Cow position:
               
chrX:12865740-12865933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 95
               

               
Conread position:
               
233-434
               

               
Cow position:
               
chrX:37453890-37454100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
233-540
               

               
Cow position:
               
chrX:8109057-8109373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
234-436
               

               
Cow position:
               
chrX:31260326-31260115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 143
               

               
Conread position:
               
235-401
               

               
Cow position:
               
chrX:20591267-20591445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
235-436
               

               
Cow position:
               
chrX:13885691-13885904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
235-444
               

               
Cow position:
               
chrX:11475454-11475234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
235-539
               

               
Cow position:
               
chrX:46374586-46374267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
237-433
               

               
Cow position:
               
chrX:43702279-43702072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
240-432
               

               
Cow position:
               
chrX:16060494-16060293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
241-436
               

               
Cow position:
               
chrX:41701657-41701863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
245-417
               

               
Cow position:
               
chrX:17908958-17908776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
249-436
               

               
Cow position:
               
chrX:20859472-20859660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
256-533
               

               
Cow position:
               
chrX:5121635-5121925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
258-441
               

               
Cow position:
               
chrX:27534213-27534027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
263-524
               

               
Cow position:
               
chrX:17563271-17563003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
265-516
               

               
Cow position:
               
chrX:8137539-8137286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
266-431
               

               
Cow position:
               
chrX:37411547-37411723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
266-436
               

               
Cow position:
               
chrX:10844684-10844516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
267-436
               

               
Cow position:
               
chrX:11908071-11908241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
267-540
               

               
Cow position:
               
chrX:28838712-28838998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
277-538
               

               
Cow position:
               
chrX:39355662-39355408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
288-433
               

               
Cow position:
               
chrX:3248800-3248654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 6
               

               
Conread position:
               
289-535
               

               
Cow position:
               
chrX:10851754-10851496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 5
               

               
Conread position:
               
296-540
               

               
Cow position:
               
chrX:25919277-25919532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 221
               

               
Conread position:
               
296-540
               

               
Cow position:
               
chrX:26610039-26610297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
297-434
               

               
Cow position:
               
chrX:41761664-41761531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chrX:10904859-10904623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
299-540
               

               
Cow position:
               
chrX:4420994-4421235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 152
               

               
Conread position:
               
300-431
               

               
Cow position:
               
chrX:24031000-24030871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
300-433
               

               
Cow position:
               
chrX:37946389-37946516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
300-434
               

               
Cow position:
               
chrX:39858292-39858156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
300-436
               

               
Cow position:
               
chrX:6683873-6683733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
300-436
               

               
Cow position:
               
chrX:25134400-25134264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
300-436
               

               
Cow position:
               
chrX:39569397-39569259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 117
               

               
Conread position:
               
300-436
               

               
Cow position:
               
chrX:40037908-40038039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
300-449
               

               
Cow position:
               
chrX:28701534-28701684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
300-455
               

               
Cow position:
               
chrX:42054873-42054716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
300-535
               

               
Cow position:
               
chrX:31785230-31785472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 14
               

               
Conread position:
               
300-536
               

               
Cow position:
               
chrX:17485922-17485686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
300-537
               

               
Cow position:
               
chrX:37454832-37455072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
300-539
               

               
Cow position:
               
chrX:26176892-26176648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
300-540
               

               
Cow position:
               
chrX:488898-489146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
300-540
               

               
Cow position:
               
chrX:20654684-20654934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
42, 180
               

               
Conread position:
               
301-433
               

               
Cow position:
               
chrX:36239260-36239125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
301-539
               

               
Cow position:
               
chrX:18799252-18799003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
304-518
               

               
Cow position:
               
chrX:1018243-1018032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
309-433
               

               
Cow position:
               
chrX:36238492-36238620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
314-540
               

               
Cow position:
               
chrX:18405640-18405411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 153
               

               
Conread position:
               
318-540
               

               
Cow position:
               
chrX:18598116-18598345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
324-532
               

               
Cow position:
               
chrX:30074613-30074831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 156
               
Show alignments to all cow chromosomes.