Cow genome map
| Conread name: | Ss1.1-rcbe22_g17.5 |
| Conread position: | 3-168 |
| Cow position: | chr26:20013395-20013555 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 130, 70 |
| Conread position: | 3-287 |
| Cow position: | chr26:9632452-9632171 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 3-293 |
| Cow position: | chr26:6470355-6470076 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 159, 71 |
| Conread position: | 3-330 |
| Cow position: | chr26:32865972-32865653 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 7-223 |
| Cow position: | chr26:4585285-4585082 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-223 |
| Cow position: | chr26:16921861-16922068 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 8-170 |
| Cow position: | chr26:21992025-21992181 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 8-224 |
| Cow position: | chr26:12238100-12237897 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 8-224 |
| Cow position: | chr26:26294274-26294064 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 69, 114 |
| Conread position: | 8-281 |
| Cow position: | chr26:14905889-14905611 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 117 |
| Conread position: | 8-290 |
| Cow position: | chr26:798375-798093 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 154, 10 |
| Conread position: | 8-296 |
| Cow position: | chr26:12519940-12520230 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 8-301 |
| Cow position: | chr26:6475508-6475232 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 8-391 |
| Cow position: | chr26:33253397-33252995 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 9-196 |
| Cow position: | chr26:6006130-6005953 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 9-221 |
| Cow position: | chr26:9104356-9104152 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 12-204 |
| Cow position: | chr26:25393957-25394151 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 12-217 |
| Cow position: | chr26:5246553-5246353 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 12-222 |
| Cow position: | chr26:8352887-8353099 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 12-222 |
| Cow position: | chr26:31633655-31633858 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 12-252 |
| Cow position: | chr26:8811056-8811286 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 12-261 |
| Cow position: | chr26:3019491-3019250 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 12-275 |
| Cow position: | chr26:30605434-30605189 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 12-277 |
| Cow position: | chr26:18719181-18719437 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 12-287 |
| Cow position: | chr26:16604211-16604485 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 12-287 |
| Cow position: | chr26:19110837-19111105 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 12-287 |
| Cow position: | chr26:22249551-22249278 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 124, 56 |
| Conread position: | 12-289 |
| Cow position: | chr26:2987150-2986877 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 124, 49 |
| Conread position: | 12-292 |
| Cow position: | chr26:9604485-9604772 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 12-293 |
| Cow position: | chr26:10292515-10292793 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 12-300 |
| Cow position: | chr26:12893499-12893205 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 207, 52 |
| Conread position: | 12-300 |
| Cow position: | chr26:25526173-25526471 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 212, 56 |
| Conread position: | 12-301 |
| Cow position: | chr26:9666483-9666209 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 12-301 |
| Cow position: | chr26:34108689-34108969 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 223, 33 |
| Conread position: | 12-310 |
| Cow position: | chr26:12155191-12154902 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 12-325 |
| Cow position: | chr26:6514768-6515082 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 184, 58 |
| Conread position: | 12-325 |
| Cow position: | chr26:34106325-34106624 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 300, 49 |
| Conread position: | 12-359 |
| Cow position: | chr26:15211728-15212080 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 124, 43 |
| Conread position: | 13-170 |
| Cow position: | chr26:23671341-23671495 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 13-222 |
| Cow position: | chr26:32836168-32836369 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-292 |
| Cow position: | chr26:21243029-21243303 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 195, 60 |
| Conread position: | 13-301 |
| Cow position: | chr26:14924413-14924689 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 14-317 |
| Cow position: | chr26:35448988-35449294 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 18-196 |
| Cow position: | chr26:8700115-8699943 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 18-222 |
| Cow position: | chr26:6864948-6865154 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 53, 112 |
| Conread position: | 18-222 |
| Cow position: | chr26:22354346-22354544 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 170, 51 |
| Conread position: | 18-245 |
| Cow position: | chr26:34169254-34169035 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 60 |
| Conread position: | 18-252 |
| Cow position: | chr26:34060266-34060491 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 18-300 |
| Cow position: | chr26:4854471-4854768 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 18-310 |
| Cow position: | chr26:32215375-32215661 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 130, 65 |
| Conread position: | 18-312 |
| Cow position: | chr26:19459617-19459934 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 19-220 |
| Cow position: | chr26:23599870-23599672 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 19-298 |
| Cow position: | chr26:21637107-21636829 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 19-316 |
| Cow position: | chr26:34119103-34118819 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 20-281 |
| Cow position: | chr26:21859755-21860008 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 20-292 |
| Cow position: | chr26:12669130-12669396 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 101 |
| Conread position: | 20-293 |
| Cow position: | chr26:23097249-23096975 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 141 |
| Conread position: | 20-295 |
| Cow position: | chr26:2196656-2196390 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 20-301 |
| Cow position: | chr26:9064275-9064540 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 21-300 |
| Cow position: | chr26:29244334-29244600 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 24-361 |
| Cow position: | chr26:11568033-11567708 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 26-295 |
| Cow position: | chr26:2769900-2769641 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 187, 79 |
| Conread position: | 29-278 |
| Cow position: | chr26:7162473-7162227 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 30-156 |
| Cow position: | chr26:11270175-11270300 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 96 |
| Conread position: | 32-268 |
| Cow position: | chr26:19903325-19903554 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 44-222 |
| Cow position: | chr26:25074676-25074847 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 74-223 |
| Cow position: | chr26:178217-178365 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 81-299 |
| Cow position: | chr26:7224350-7224130 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 91-292 |
| Cow position: | chr26:10137738-10137544 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 94-301 |
| Cow position: | chr26:9102104-9101905 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 101-260 |
| Cow position: | chr26:7387779-7387933 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 101-292 |
| Cow position: | chr26:7961952-7962132 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 111-297 |
| Cow position: | chr26:3186567-3186751 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 115-350 |
| Cow position: | chr26:34100969-34100744 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 116-271 |
| Cow position: | chr26:19768782-19768628 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 122-301 |
| Cow position: | chr26:28446613-28446794 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 122-380 |
| Cow position: | chr26:13018359-13018099 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 125-356 |
| Cow position: | chr26:12652211-12651984 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 132-289 |
| Cow position: | chr26:21578059-21577905 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 152-293 |
| Cow position: | chr26:19649051-19649184 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 153-345 |
| Cow position: | chr26:25241689-25241876 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 169-291 |
| Cow position: | chr26:32658934-32658813 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.