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Cow genome map

           
Conread name:
           
Ss1.1-rcbl0_002410.5.5
        

               
Conread position:
               
73-523
               

               
Cow position:
               
chr5:46512491-46512951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
77-361
               

               
Cow position:
               
chr5:24069670-24069382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
87-577
               

               
Cow position:
               
chr5:34301192-34300686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
41, 213
               

               
Conread position:
               
92-558
               

               
Cow position:
               
chr5:63987175-63987666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 203
               

               
Conread position:
               
95-584
               

               
Cow position:
               
chr5:57074084-57074580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 29
               

               
Conread position:
               
97-552
               

               
Cow position:
               
chr5:35969776-35969329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
97-560
               

               
Cow position:
               
chr5:43992583-43992104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
100-396
               

               
Cow position:
               
chr5:43408107-43408401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr5:64591829-64592150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
17, 302
               

               
Conread position:
               
103-395
               

               
Cow position:
               
chr5:49341805-49342090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
103-396
               

               
Cow position:
               
chr5:24136964-24136671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
105-560
               

               
Cow position:
               
chr5:4166893-4166449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
106-505
               

               
Cow position:
               
chr5:30628926-30629324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
107-569
               

               
Cow position:
               
chr5:59325592-59326059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
6, 209
               

               
Conread position:
               
109-567
               

               
Cow position:
               
chr5:31640670-31640199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
115-379
               

               
Cow position:
               
chr5:61875772-61875517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
17, 107
               

               
Conread position:
               
131-341
               

               
Cow position:
               
chr5:35647576-35647355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr5:60598986-60599298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
281, 85
               

               
Conread position:
               
131-541
               

               
Cow position:
               
chr5:23168600-23169021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 356
               

               
Conread position:
               
131-555
               

               
Cow position:
               
chr5:41545666-41546110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
131-571
               

               
Cow position:
               
chr5:55966672-55967116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 43
               

               
Conread position:
               
133-388
               

               
Cow position:
               
chr5:30233109-30232871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
220, 39
               

               
Conread position:
               
154-566
               

               
Cow position:
               
chr5:57364906-57365302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
170-387
               

               
Cow position:
               
chr5:8736097-8736323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
129, 109
               

               
Conread position:
               
174-394
               

               
Cow position:
               
chr5:35982556-35982781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
174-398
               

               
Cow position:
               
chr5:61102890-61102670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
134, 41
               

               
Conread position:
               
174-529
               

               
Cow position:
               
chr5:4221155-4220790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
196, 35
               

               
Conread position:
               
174-579
               

               
Cow position:
               
chr5:4031812-4032230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
178-554
               

               
Cow position:
               
chr5:33538052-33537675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
180-468
               

               
Cow position:
               
chr5:22667244-22666960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
226, 148
               

               
Conread position:
               
180-560
               

               
Cow position:
               
chr5:50533218-50533605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
182-393
               

               
Cow position:
               
chr5:20288094-20288303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
183-560
               

               
Cow position:
               
chr5:43457366-43457737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
97, 51
               

               
Conread position:
               
184-568
               

               
Cow position:
               
chr5:52165015-52165412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
214, 36
               

               
Conread position:
               
185-388
               

               
Cow position:
               
chr5:49501661-49501859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
181, 38
               

               
Conread position:
               
185-572
               

               
Cow position:
               
chr5:68872362-68871958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
186-363
               

               
Cow position:
               
chr5:73418127-73418299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
186-560
               

               
Cow position:
               
chr5:27306474-27306097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
187-389
               

               
Cow position:
               
chr5:22795375-22795178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
189-572
               

               
Cow position:
               
chr5:24996062-24996458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 36
               

               
Conread position:
               
189-630
               

               
Cow position:
               
chr5:30253900-30253451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 31
               

               
Conread position:
               
190-577
               

               
Cow position:
               
chr5:5110911-5111316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
191-395
               

               
Cow position:
               
chr5:17602048-17602242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
168, 29
               

               
Conread position:
               
191-475
               

               
Cow position:
               
chr5:7755407-7755702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
191-558
               

               
Cow position:
               
chr5:21829024-21828645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 32
               

               
Conread position:
               
191-558
               

               
Cow position:
               
chr5:26467787-26467401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
191-560
               

               
Cow position:
               
chr5:14550423-14550807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
192-368
               

               
Cow position:
               
chr5:9233832-9234005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
193-341
               

               
Cow position:
               
chr5:38169050-38168906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
193-410
               

               
Cow position:
               
chr5:59626815-59627030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
193-496
               

               
Cow position:
               
chr5:45397724-45397421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
219, 22
               

               
Conread position:
               
193-545
               

               
Cow position:
               
chr5:50600203-50599850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
193-549
               

               
Cow position:
               
chr5:71494982-71494606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chr5:56071015-56070632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
193-567
               

               
Cow position:
               
chr5:45845533-45845923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
193-572
               

               
Cow position:
               
chr5:47601967-47601583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
205, 27
               

               
Conread position:
               
193-572
               

               
Cow position:
               
chr5:64523705-64524114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
194-560
               

               
Cow position:
               
chr5:68719024-68718662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
262, 26
               

               
Conread position:
               
194-566
               

               
Cow position:
               
chr5:66366669-66366304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
195-547
               

               
Cow position:
               
chr5:4280601-4280255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
195-555
               

               
Cow position:
               
chr5:12322652-12323017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
159, 21
               

               
Conread position:
               
195-558
               

               
Cow position:
               
chr5:66257791-66257423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 28
               

               
Conread position:
               
195-560
               

               
Cow position:
               
chr5:29828203-29827832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
121, 23
               

               
Conread position:
               
195-560
               

               
Cow position:
               
chr5:32338813-32339196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
195-560
               

               
Cow position:
               
chr5:65753014-65752635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
160, 30
               

               
Conread position:
               
195-567
               

               
Cow position:
               
chr5:35685090-35684706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
196-560
               

               
Cow position:
               
chr5:43858262-43858649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
197-398
               

               
Cow position:
               
chr5:66531072-66530873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
167, 19
               

               
Conread position:
               
197-407
               

               
Cow position:
               
chr5:12434694-12434480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
144, 23
               

               
Conread position:
               
197-410
               

               
Cow position:
               
chr5:66551741-66551955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
197-559
               

               
Cow position:
               
chr5:39447381-39447752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
170, 28
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr5:50821944-50821567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr5:3771997-3771614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
197-577
               

               
Cow position:
               
chr5:69461486-69461096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
198-560
               

               
Cow position:
               
chr5:74643528-74643882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
214, 22
               

               
Conread position:
               
198-580
               

               
Cow position:
               
chr5:22242615-22243027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
199-560
               

               
Cow position:
               
chr5:37646395-37646773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
199-571
               

               
Cow position:
               
chr5:21617612-21617222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 177
               

               
Conread position:
               
199-572
               

               
Cow position:
               
chr5:28302594-28302974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
201-571
               

               
Cow position:
               
chr5:43929589-43929967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
161, 19
               

               
Conread position:
               
202-560
               

               
Cow position:
               
chr5:63992020-63992385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 281
               

               
Conread position:
               
203-467
               

               
Cow position:
               
chr5:56877627-56877356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
205-410
               

               
Cow position:
               
chr5:56338878-56339074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
205-560
               

               
Cow position:
               
chr5:38833264-38832896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
206-506
               

               
Cow position:
               
chr5:56317431-56317127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
185, 10
               

               
Conread position:
               
206-560
               

               
Cow position:
               
chr5:69337962-69337611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
209-560
               

               
Cow position:
               
chr5:27171849-27172182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
196, 101
               

               
Conread position:
               
212-558
               

               
Cow position:
               
chr5:9893982-9894346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
154, 141
               

               
Conread position:
               
215-486
               

               
Cow position:
               
chr5:42670727-42671006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
215-534
               

               
Cow position:
               
chr5:7044566-7044905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
7, 335
               

               
Conread position:
               
216-567
               

               
Cow position:
               
chr5:15426674-15426300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chr5:49440738-49440991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
220-522
               

               
Cow position:
               
chr5:34625092-34624785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
220-537
               

               
Cow position:
               
chr5:57575906-57575567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
220-560
               

               
Cow position:
               
chr5:61726099-61725749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
221-359
               

               
Cow position:
               
chr5:50824724-50824586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 35
               

               
Conread position:
               
221-389
               

               
Cow position:
               
chr5:57686605-57686776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chr5:36038869-36039048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chr5:69099852-69099676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chr5:72006358-72006535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
221-411
               

               
Cow position:
               
chr5:60183937-60183744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
221-504
               

               
Cow position:
               
chr5:65967599-65967897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
221-517
               

               
Cow position:
               
chr5:65136394-65136105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
191, 14
               

               
Conread position:
               
221-534
               

               
Cow position:
               
chr5:34562149-34561813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
221-536
               

               
Cow position:
               
chr5:69731632-69731320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
221-537
               

               
Cow position:
               
chr5:50943024-50943352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
221-540
               

               
Cow position:
               
chr5:44446733-44447089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
221-559
               

               
Cow position:
               
chr5:72895818-72895472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
171, 250
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr5:6045428-6045065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr5:14314660-14314301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 352
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr5:15364014-15363669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr5:20783754-20783407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr5:30303023-30302677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr5:56028409-56028751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 89
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr5:72045545-72045862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
189, 68
               

               
Conread position:
               
221-562
               

               
Cow position:
               
chr5:16025336-16025684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
146, 68
               

               
Conread position:
               
221-566
               

               
Cow position:
               
chr5:66339207-66338857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
221-571
               

               
Cow position:
               
chr5:40109624-40109268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 60
               

               
Conread position:
               
221-571
               

               
Cow position:
               
chr5:43923030-43923382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
133, 28
               

               
Conread position:
               
221-571
               

               
Cow position:
               
chr5:53835848-53835482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 51
               

               
Conread position:
               
221-572
               

               
Cow position:
               
chr5:44053923-44054272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
221-572
               

               
Cow position:
               
chr5:67244050-67243690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
221-577
               

               
Cow position:
               
chr5:37814758-37814384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
158, 251
               

               
Conread position:
               
221-580
               

               
Cow position:
               
chr5:11229541-11229916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
221-591
               

               
Cow position:
               
chr5:29903391-29903777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
188, 130
               

               
Conread position:
               
222-556
               

               
Cow position:
               
chr5:60715237-60715572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 67
               

               
Conread position:
               
222-558
               

               
Cow position:
               
chr5:27419598-27419940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chr5:11668054-11668399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
172, 131
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chr5:20779267-20779601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
133, 88
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chr5:27411270-27411611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chr5:28945929-28946280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chr5:34441649-34442013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 164
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chr5:44752176-44752531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
89, 266
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chr5:72006734-72007074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
176, 65
               

               
Conread position:
               
222-561
               

               
Cow position:
               
chr5:29756467-29756117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
222-572
               

               
Cow position:
               
chr5:35145459-35145118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
223-560
               

               
Cow position:
               
chr5:19813091-19813433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
136, 5
               

               
Conread position:
               
223-577
               

               
Cow position:
               
chr5:57626917-57626570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 5
               

               
Conread position:
               
223-591
               

               
Cow position:
               
chr5:45804189-45803809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
225-550
               

               
Cow position:
               
chr5:6572872-6572540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 50
               

               
Conread position:
               
225-554
               

               
Cow position:
               
chr5:46509737-46510083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 153
               

               
Conread position:
               
225-560
               

               
Cow position:
               
chr5:28927466-28927814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
225-560
               

               
Cow position:
               
chr5:64139688-64139342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 330
               

               
Conread position:
               
225-577
               

               
Cow position:
               
chr5:62172540-62172178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 143
               

               
Conread position:
               
226-509
               

               
Cow position:
               
chr5:74580916-74580622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
166, 105
               

               
Conread position:
               
226-517
               

               
Cow position:
               
chr5:44028180-44028480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
226-555
               

               
Cow position:
               
chr5:64175999-64176337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 176
               

               
Conread position:
               
227-560
               

               
Cow position:
               
chr5:26132972-26133295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
182, 13
               

               
Conread position:
               
228-393
               

               
Cow position:
               
chr5:67118545-67118379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
228-396
               

               
Cow position:
               
chr5:56517229-56517060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 62
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chr5:43403029-43402844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chr5:54375377-54375563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
103, 131
               

               
Conread position:
               
228-415
               

               
Cow position:
               
chr5:63150044-63150228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
228-423
               

               
Cow position:
               
chr5:26150296-26150488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
228-475
               

               
Cow position:
               
chr5:57101656-57101916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr5:12673353-12673620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
170, 61
               

               
Conread position:
               
228-495
               

               
Cow position:
               
chr5:42050677-42050391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
129, 101
               

               
Conread position:
               
228-496
               

               
Cow position:
               
chr5:3582685-3582415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
169, 120
               

               
Conread position:
               
228-507
               

               
Cow position:
               
chr5:30949790-30950088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
228-516
               

               
Cow position:
               
chr5:6286308-6286604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 130
               

               
Conread position:
               
228-528
               

               
Cow position:
               
chr5:48009734-48010036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
111, 173
               

               
Conread position:
               
228-532
               

               
Cow position:
               
chr5:22643107-22643411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
148, 47
               

               
Conread position:
               
228-547
               

               
Cow position:
               
chr5:8820888-8821220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
228-548
               

               
Cow position:
               
chr5:55177011-55176677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
228-549
               

               
Cow position:
               
chr5:57737224-57736904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
170, 123
               

               
Conread position:
               
228-552
               

               
Cow position:
               
chr5:29771653-29771301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
115, 193
               

               
Conread position:
               
228-554
               

               
Cow position:
               
chr5:44796608-44796933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
224, 135
               

               
Conread position:
               
228-557
               

               
Cow position:
               
chr5:62142801-62142452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
139, 261
               

               
Conread position:
               
228-558
               

               
Cow position:
               
chr5:57934983-57935333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr5:5257163-5257518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 226
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr5:29353002-29353350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr5:56524299-56523953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 295
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr5:71454487-71454817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
165, 107
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr5:72564889-72564541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
139, 332
               

               
Conread position:
               
228-567
               

               
Cow position:
               
chr5:12351683-12352010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
228-567
               

               
Cow position:
               
chr5:16893646-16894004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
228-569
               

               
Cow position:
               
chr5:35826727-35826359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
228-569
               

               
Cow position:
               
chr5:65941125-65941484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 143
               

               
Conread position:
               
228-571
               

               
Cow position:
               
chr5:4218982-4218644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
228-571
               

               
Cow position:
               
chr5:15598113-15598467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
228-571
               

               
Cow position:
               
chr5:30845235-30844879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 61
               

               
Conread position:
               
228-571
               

               
Cow position:
               
chr5:52000343-51999986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
161, 40
               

               
Conread position:
               
228-571
               

               
Cow position:
               
chr5:58856227-58855871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
170, 54
               

               
Conread position:
               
229-560
               

               
Cow position:
               
chr5:42744904-42744576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
229-560
               

               
Cow position:
               
chr5:44993925-44994258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
232-577
               

               
Cow position:
               
chr5:58793486-58793854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
234-566
               

               
Cow position:
               
chr5:20407559-20407890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 22
               

               
Conread position:
               
235-560
               

               
Cow position:
               
chr5:67212479-67212157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 180
               

               
Conread position:
               
235-572
               

               
Cow position:
               
chr5:30276808-30276457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
237-551
               

               
Cow position:
               
chr5:56518107-56518421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 5
               

               
Conread position:
               
240-577
               

               
Cow position:
               
chr5:41598599-41598936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
241-496
               

               
Cow position:
               
chr5:46425743-46426008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
114, 243
               

               
Conread position:
               
241-506
               

               
Cow position:
               
chr5:41009892-41010164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
157, 64
               

               
Conread position:
               
241-572
               

               
Cow position:
               
chr5:28224564-28224221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
242-551
               

               
Cow position:
               
chr5:41609395-41609090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
246-572
               

               
Cow position:
               
chr5:43737856-43738182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
110, 198
               

               
Conread position:
               
247-538
               

               
Cow position:
               
chr5:17869794-17869507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
247-560
               

               
Cow position:
               
chr5:65932837-65933149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 91
               

               
Conread position:
               
256-558
               

               
Cow position:
               
chr5:56820167-56820479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
257-394
               

               
Cow position:
               
chr5:31052476-31052345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
257-555
               

               
Cow position:
               
chr5:26262583-26262890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
257-558
               

               
Cow position:
               
chr5:25230916-25231233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
257-558
               

               
Cow position:
               
chr5:64321850-64321529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 107
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chr5:32696727-32697034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chr5:52644984-52645299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
129, 98
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chr5:62869946-62870256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chr5:65588795-65588491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
102, 53
               

               
Conread position:
               
257-567
               

               
Cow position:
               
chr5:7193515-7193204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 171
               

               
Conread position:
               
257-590
               

               
Cow position:
               
chr5:41165184-41164836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
107, 344
               

               
Conread position:
               
258-520
               

               
Cow position:
               
chr5:54090130-54089856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 5
               

               
Conread position:
               
258-558
               

               
Cow position:
               
chr5:37425837-37425524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
258-558
               

               
Cow position:
               
chr5:39442392-39442073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 5
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr5:18702125-18702434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
117, 96
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr5:21525254-21524943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
113, 46
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr5:31096706-31097026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr5:35208356-35208040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr5:48758035-48757723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
100, 250
               

               
Conread position:
               
258-561
               

               
Cow position:
               
chr5:51503098-51502790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
137, 10
               

               
Conread position:
               
258-567
               

               
Cow position:
               
chr5:6528778-6528452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 227
               

               
Conread position:
               
258-569
               

               
Cow position:
               
chr5:38853444-38853128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
82, 136
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chr5:24349202-24348878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
95, 107
               

               
Conread position:
               
258-577
               

               
Cow position:
               
chr5:2309461-2309803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
258-577
               

               
Cow position:
               
chr5:31660562-31660877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
113, 91
               

               
Conread position:
               
258-579
               

               
Cow position:
               
chr5:32394694-32394359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
133, 113
               

               
Conread position:
               
259-396
               

               
Cow position:
               
chr5:63192647-63192784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
259-584
               

               
Cow position:
               
chr5:54350267-54350607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
261-513
               

               
Cow position:
               
chr5:57265812-57266072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
261-552
               

               
Cow position:
               
chr5:6503789-6504093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
111, 218
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:4506873-4507182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 83
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:28330251-28330553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:33661938-33661633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 75
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:34505834-34506147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 234
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:36868829-36868524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
87, 200
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:40889205-40889505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
121, 93
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:48829246-48828926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
85, 138
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:53055469-53055774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 218
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr5:65601549-65601239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
69, 62
               

               
Conread position:
               
261-566
               

               
Cow position:
               
chr5:34528639-34528334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
261-569
               

               
Cow position:
               
chr5:32153227-32153547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
120, 98
               

               
Conread position:
               
261-571
               

               
Cow position:
               
chr5:1247355-1247044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
261-572
               

               
Cow position:
               
chr5:9089931-9090257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 102
               

               
Conread position:
               
261-572
               

               
Cow position:
               
chr5:61600499-61600178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
261-576
               

               
Cow position:
               
chr5:68264866-68265202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
261-577
               

               
Cow position:
               
chr5:23140497-23140811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
262-496
               

               
Cow position:
               
chr5:40271118-40270886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
262-560
               

               
Cow position:
               
chr5:54112004-54111697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 48
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chr5:12149636-12149325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
102, 91
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chr5:41636958-41636652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chr5:50637911-50637609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 44
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chr5:66297303-66297017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
263-563
               

               
Cow position:
               
chr5:11427143-11427467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 85
               

               
Conread position:
               
263-564
               

               
Cow position:
               
chr5:60210053-60210365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
263-569
               

               
Cow position:
               
chr5:31469503-31469814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 209
               

               
Conread position:
               
264-558
               

               
Cow position:
               
chr5:72173116-72172804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
81, 71
               

               
Conread position:
               
264-560
               

               
Cow position:
               
chr5:35209386-35209693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
264-560
               

               
Cow position:
               
chr5:47756861-47756547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
265-560
               

               
Cow position:
               
chr5:16937934-16938229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
105, 88
               

               
Conread position:
               
265-560
               

               
Cow position:
               
chr5:41951008-41951305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 70
               

               
Conread position:
               
265-560
               

               
Cow position:
               
chr5:61488023-61488332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
267-529
               

               
Cow position:
               
chr5:4322493-4322220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
268-560
               

               
Cow position:
               
chr5:45170444-45170141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
270-566
               

               
Cow position:
               
chr5:34638967-34638658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 94
               

               
Conread position:
               
276-571
               

               
Cow position:
               
chr5:63964092-63964406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 100
               

               
Conread position:
               
276-572
               

               
Cow position:
               
chr5:70101746-70102042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
95, 150
               

               
Conread position:
               
277-541
               

               
Cow position:
               
chr5:35449312-35449051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
91, 185
               

               
Conread position:
               
277-555
               

               
Cow position:
               
chr5:34115725-34115446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
277-569
               

               
Cow position:
               
chr5:20554678-20554980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 64
               

               
Conread position:
               
277-574
               

               
Cow position:
               
chr5:63185178-63185489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
278-528
               

               
Cow position:
               
chr5:66404208-66403954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
280-569
               

               
Cow position:
               
chr5:49361923-49362220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
120, 29
               

               
Conread position:
               
281-523
               

               
Cow position:
               
chr5:6670121-6670382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
281-560
               

               
Cow position:
               
chr5:50729551-50729274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
283-560
               

               
Cow position:
               
chr5:27155086-27154801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
71, 157
               

               
Conread position:
               
285-560
               

               
Cow position:
               
chr5:13537207-13536936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
286-560
               

               
Cow position:
               
chr5:14832555-14832829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
100, 162
               

               
Conread position:
               
286-569
               

               
Cow position:
               
chr5:58865-59158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 191
               

               
Conread position:
               
288-552
               

               
Cow position:
               
chr5:6196701-6196956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
288-569
               

               
Cow position:
               
chr5:42096687-42096389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
290-560
               

               
Cow position:
               
chr5:64823248-64823534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
70, 183
               

               
Conread position:
               
292-549
               

               
Cow position:
               
chr5:17630819-17631080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
294-516
               

               
Cow position:
               
chr5:41452606-41452844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 175
               

               
Conread position:
               
298-553
               

               
Cow position:
               
chr5:1779231-1779476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 7
               

               
Conread position:
               
298-571
               

               
Cow position:
               
chr5:27015735-27015457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
298-572
               

               
Cow position:
               
chr5:4797267-4797545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
300-560
               

               
Cow position:
               
chr5:3627099-3627389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
304-560
               

               
Cow position:
               
chr5:70050791-70050531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
304-565
               

               
Cow position:
               
chr5:60126422-60126147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
311-512
               

               
Cow position:
               
chr5:3549739-3549951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
311-560
               

               
Cow position:
               
chr5:34916173-34915921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
311-591
               

               
Cow position:
               
chr5:6086518-6086817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
313-577
               

               
Cow position:
               
chr5:37713854-37714144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
315-560
               

               
Cow position:
               
chr5:72310741-72310493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
150, 38
               

               
Conread position:
               
318-559
               

               
Cow position:
               
chr5:62826717-62826973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
45, 174
               

               
Conread position:
               
319-560
               

               
Cow position:
               
chr5:19470156-19470404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
320-560
               

               
Cow position:
               
chr5:34288435-34288691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
321-560
               

               
Cow position:
               
chr5:694607-694366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr5:59759400-59759192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 145
               

               
Conread position:
               
337-571
               

               
Cow position:
               
chr5:63456569-63456806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
340-577
               

               
Cow position:
               
chr5:34921822-34922074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
348-579
               

               
Cow position:
               
chr5:70608988-70608758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
353-560
               

               
Cow position:
               
chr5:9499101-9499314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
353-571
               

               
Cow position:
               
chr5:51071262-51071042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 190
               

               
Conread position:
               
354-577
               

               
Cow position:
               
chr5:39418808-39419022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
356-566
               

               
Cow position:
               
chr5:41229704-41229485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
358-560
               

               
Cow position:
               
chr5:40595013-40595223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
359-572
               

               
Cow position:
               
chr5:23666284-23666494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
360-556
               

               
Cow position:
               
chr5:11955511-11955701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
360-560
               

               
Cow position:
               
chr5:44703323-44703121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
363-565
               

               
Cow position:
               
chr5:53409454-53409659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
67, 40
               

               
Conread position:
               
363-577
               

               
Cow position:
               
chr5:51360925-51360706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
370-566
               

               
Cow position:
               
chr5:54530961-54530755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
381-559
               

               
Cow position:
               
chr5:54404939-54405115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
381-560
               

               
Cow position:
               
chr5:25225699-25225870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
381-560
               

               
Cow position:
               
chr5:37366853-37366676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
382-557
               

               
Cow position:
               
chr5:66280840-66281011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
170, 9
               

               
Conread position:
               
382-559
               

               
Cow position:
               
chr5:63917459-63917630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
382-560
               

               
Cow position:
               
chr5:17087071-17087251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
382-565
               

               
Cow position:
               
chr5:62026996-62027172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
382-566
               

               
Cow position:
               
chr5:50950505-50950326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
382-571
               

               
Cow position:
               
chr5:56433755-56433568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 9
               

               
Conread position:
               
382-580
               

               
Cow position:
               
chr5:14703010-14703212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
383-577
               

               
Cow position:
               
chr5:37646024-37645835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
384-560
               

               
Cow position:
               
chr5:27690110-27690280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
384-560
               

               
Cow position:
               
chr5:75436944-75437118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
399-560
               

               
Cow position:
               
chr5:30347024-30347182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
399-572
               

               
Cow position:
               
chr5:45191850-45192027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
403-559
               

               
Cow position:
               
chr5:15412631-15412472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
403-572
               

               
Cow position:
               
chr5:65924765-65924933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
158, 21
               

               
Conread position:
               
404-560
               

               
Cow position:
               
chr5:29505042-29504891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
404-560
               

               
Cow position:
               
chr5:54427669-54427820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
404-569
               

               
Cow position:
               
chr5:1343920-1344089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
404-580
               

               
Cow position:
               
chr5:1766413-1766585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
404-581
               

               
Cow position:
               
chr5:51357569-51357747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
405-577
               

               
Cow position:
               
chr5:24642796-24642961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
407-549
               

               
Cow position:
               
chr5:15882544-15882686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
407-560
               

               
Cow position:
               
chr5:37941861-37942014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 68
               

               
Conread position:
               
407-577
               

               
Cow position:
               
chr5:61030297-61030468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
408-521
               

               
Cow position:
               
chr5:57576143-57576031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
408-531
               

               
Cow position:
               
chr5:50870473-50870349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
408-532
               

               
Cow position:
               
chr5:50215628-50215752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
408-540
               

               
Cow position:
               
chr5:9390466-9390334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-541
               

               
Cow position:
               
chr5:8994640-8994768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
408-541
               

               
Cow position:
               
chr5:24837019-24837148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
408-548
               

               
Cow position:
               
chr5:69099459-69099319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-549
               

               
Cow position:
               
chr5:40039843-40039981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
408-550
               

               
Cow position:
               
chr5:47547790-47547928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
408-554
               

               
Cow position:
               
chr5:8024268-8024407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
408-557
               

               
Cow position:
               
chr5:32140781-32140925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:1104937-1105092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:3281765-3281610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:3492122-3491980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:5848263-5848408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:7764004-7763852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 126
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:12672103-12672248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:12709815-12709665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:13691641-13691797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:14415706-14415552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:14420411-14420566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:16509023-16508875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:26377742-26377888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:28324281-28324124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:33414482-33414626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:36855132-36854991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:43474774-43474626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:45225897-45226045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:46322883-46323033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:47313403-47313252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:56135040-56135190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:57327724-57327567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:59298028-59298180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:61576471-61576318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:63103843-63103690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:64844194-64844338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr5:72150174-72150029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
141, 58
               

               
Conread position:
               
408-566
               

               
Cow position:
               
chr5:55942469-55942625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr5:21944324-21944153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr5:30816646-30816487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr5:32963703-32963857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr5:47888782-47888943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr5:50722976-50722822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr5:65887079-65887242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 140
               

               
Conread position:
               
408-569
               

               
Cow position:
               
chr5:45705977-45705816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
408-569
               

               
Cow position:
               
chr5:58460468-58460636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
408-571
               

               
Cow position:
               
chr5:5938253-5938091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
408-571
               

               
Cow position:
               
chr5:60520089-60519933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
154, 43
               

               
Conread position:
               
408-572
               

               
Cow position:
               
chr5:3280944-3281102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
408-572
               

               
Cow position:
               
chr5:17063163-17063328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
408-572
               

               
Cow position:
               
chr5:49821074-49820908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
408-572
               

               
Cow position:
               
chr5:65776455-65776620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
408-588
               

               
Cow position:
               
chr5:2332583-2332764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
408-633
               

               
Cow position:
               
chr5:35235781-35236004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
409-546
               

               
Cow position:
               
chr5:51053722-51053855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:6033166-6033017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:9859787-9859939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:16185013-16184868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:26562086-26561931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:28035636-28035489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:28248105-28247955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:36479611-36479762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:48178750-48178897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr5:59443322-59443472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
409-566
               

               
Cow position:
               
chr5:50975818-50975660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
72, 137
               

               
Conread position:
               
409-571
               

               
Cow position:
               
chr5:32975625-32975784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
409-573
               

               
Cow position:
               
chr5:26990318-26990158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:10789748-10789899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:12803424-12803274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:18090649-18090506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 57
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:20127981-20127833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:28926256-28926406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 126
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:36679510-36679661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:58144676-58144826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:63840219-63840367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:64393083-64392933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr5:72903305-72903445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
410-566
               

               
Cow position:
               
chr5:47317046-47317195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
410-571
               

               
Cow position:
               
chr5:61455684-61455521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
410-572
               

               
Cow position:
               
chr5:14629979-14630142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
410-577
               

               
Cow position:
               
chr5:25935877-25935713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
412-560
               

               
Cow position:
               
chr5:60948143-60947997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
412-566
               

               
Cow position:
               
chr5:2851242-2851087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 133
               

               
Conread position:
               
413-567
               

               
Cow position:
               
chr5:27007820-27007670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
413-571
               

               
Cow position:
               
chr5:63388720-63388561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
413-577
               

               
Cow position:
               
chr5:19905351-19905517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 90
               

               
Conread position:
               
413-577
               

               
Cow position:
               
chr5:29560333-29560170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 72
               

               
Conread position:
               
414-557
               

               
Cow position:
               
chr5:45036943-45036804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 61
               

               
Conread position:
               
414-577
               

               
Cow position:
               
chr5:34923192-34923346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 56
               

               
Conread position:
               
414-592
               

               
Cow position:
               
chr5:34915066-34915242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
160, 36
               

               
Conread position:
               
417-566
               

               
Cow position:
               
chr5:52269267-52269413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
419-560
               

               
Cow position:
               
chr5:26541209-26541075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
419-566
               

               
Cow position:
               
chr5:57494493-57494642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
420-560
               

               
Cow position:
               
chr5:37090855-37090996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
420-572
               

               
Cow position:
               
chr5:19969113-19969266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
421-559
               

               
Cow position:
               
chr5:46754645-46754507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
421-560
               

               
Cow position:
               
chr5:37065012-37064872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
421-571
               

               
Cow position:
               
chr5:1276558-1276707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
421-573
               

               
Cow position:
               
chr5:59450818-59450969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
141, 119
               

               
Conread position:
               
422-558
               

               
Cow position:
               
chr5:6987077-6986939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
424-558
               

               
Cow position:
               
chr5:41522885-41523012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
424-559
               

               
Cow position:
               
chr5:48238178-48238311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
424-559
               

               
Cow position:
               
chr5:63967736-63967866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr5:27403328-27403465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr5:40356956-40357091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr5:41303177-41303312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr5:50573668-50573535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr5:58519494-58519620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr5:66119338-66119474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
424-566
               

               
Cow position:
               
chr5:39094463-39094326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
424-571
               

               
Cow position:
               
chr5:34050022-34049876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
137, 41
               

               
Conread position:
               
424-572
               

               
Cow position:
               
chr5:49685368-49685515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chr5:4552046-4551891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 119
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chr5:54311243-54311094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
137, 46
               

               
Conread position:
               
425-560
               

               
Cow position:
               
chr5:24934120-24933984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
425-567
               

               
Cow position:
               
chr5:34184133-34183989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
426-560
               

               
Cow position:
               
chr5:15479022-15478892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
426-560
               

               
Cow position:
               
chr5:18574079-18573949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
426-560
               

               
Cow position:
               
chr5:27011206-27011073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
426-560
               

               
Cow position:
               
chr5:42667483-42667609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
426-560
               

               
Cow position:
               
chr5:47871138-47871272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
426-566
               

               
Cow position:
               
chr5:31104213-31104075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
426-571
               

               
Cow position:
               
chr5:28230064-28229924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
426-601
               

               
Cow position:
               
chr5:55756522-55756707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
428-560
               

               
Cow position:
               
chr5:22102405-22102534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
428-560
               

               
Cow position:
               
chr5:55985639-55985771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
428-560
               

               
Cow position:
               
chr5:58005154-58005023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
429-560
               

               
Cow position:
               
chr5:35125923-35125795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
429-560
               

               
Cow position:
               
chr5:62378410-62378281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
430-557
               

               
Cow position:
               
chr5:29860230-29860101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
77, 116
               

               
Conread position:
               
430-560
               

               
Cow position:
               
chr5:66815670-66815797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
430-566
               

               
Cow position:
               
chr5:32087812-32087948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
435-560
               

               
Cow position:
               
chr5:60015823-60015700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
438-565
               

               
Cow position:
               
chr5:60183422-60183299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
440-560
               

               
Cow position:
               
chr5:41935902-41936020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
440-571
               

               
Cow position:
               
chr5:35151083-35151214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 115
               

               
Conread position:
               
451-567
               

               
Cow position:
               
chr5:35683959-35683843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
467-567
               

               
Cow position:
               
chr5:19751724-19751624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
490-897
               

               
Cow position:
               
chr5:18883806-18884209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
68, 35
               

               
Conread position:
               
510-885
               

               
Cow position:
               
chr5:23529669-23530023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
548-898
               

               
Cow position:
               
chr5:4353324-4352977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
548-898
               

               
Cow position:
               
chr5:32365486-32365140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
559-898
               

               
Cow position:
               
chr5:59770759-59770418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
560-810
               

               
Cow position:
               
chr5:1641080-1641328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr5:26076490-26076829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr5:27178359-27178018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
560-900
               

               
Cow position:
               
chr5:41980185-41979853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 124
               

               
Conread position:
               
561-866
               

               
Cow position:
               
chr5:28571305-28570998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 39
               

               
Conread position:
               
561-884
               

               
Cow position:
               
chr5:57969530-57969215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 6
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chr5:23846266-23846598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
63, 37
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chr5:42043604-42043278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chr5:57124220-57123888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
37, 6
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chr5:63402710-63403041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
209, 20
               

               
Conread position:
               
563-784
               

               
Cow position:
               
chr5:16910378-16910599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
563-877
               

               
Cow position:
               
chr5:33281518-33281829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
563-897
               

               
Cow position:
               
chr5:40347576-40347908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
563-898
               

               
Cow position:
               
chr5:40897623-40897948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-810
               

               
Cow position:
               
chr5:6772275-6772031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-896
               

               
Cow position:
               
chr5:6189606-6189280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
564-897
               

               
Cow position:
               
chr5:38662039-38661705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:443602-443940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:445225-444891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:3501420-3501757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:4434797-4435130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:4963671-4964002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:5925252-5925590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:6585753-6586090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:9003403-9003740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:10513566-10513903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:10773396-10773732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:14543593-14543930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:23957619-23957956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:28948035-28948369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:29673952-29673623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:32775520-32775183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:37610234-37610571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:42507467-42507129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:45180381-45180722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 126
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:46626560-46626895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:46735569-46735909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 125
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:51166599-51166936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:52823499-52823836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:57336706-57337043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:57364072-57364395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:57928664-57928997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:58141535-58141871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:58198717-58198381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr5:59146083-59145745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
564-900
               

               
Cow position:
               
chr5:10104060-10103716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
60, 121
               

               
Conread position:
               
574-874
               

               
Cow position:
               
chr5:20777998-20778296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
577-785
               

               
Cow position:
               
chr5:6842436-6842642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
577-832
               

               
Cow position:
               
chr5:41066719-41066467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 109
               

               
Conread position:
               
577-898
               

               
Cow position:
               
chr5:5105919-5105595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
48, 109
               

               
Conread position:
               
577-898
               

               
Cow position:
               
chr5:15361859-15361534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 110
               

               
Conread position:
               
577-898
               

               
Cow position:
               
chr5:23353441-23353116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
577-898
               

               
Cow position:
               
chr5:24644174-24644489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
577-899
               

               
Cow position:
               
chr5:12502478-12502798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
579-892
               

               
Cow position:
               
chr5:25232449-25232768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
582-860
               

               
Cow position:
               
chr5:26511968-26512249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-896
               

               
Cow position:
               
chr5:1339233-1339549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
582-896
               

               
Cow position:
               
chr5:21786007-21786321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:8177798-8177479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:18119789-18120102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:18558713-18559032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:24101340-24101021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:29634118-29633799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:30157049-30156729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:37735064-37734744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:44709690-44710009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:46779206-46778888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:50688502-50688183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:54786418-54786737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:54928230-54928542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:56786239-56785920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:64779318-64779633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:70531725-70532038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr5:72856563-72856252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-899
               

               
Cow position:
               
chr5:49755636-49755952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
583-867
               

               
Cow position:
               
chr5:47560868-47561155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 42
               

               
Conread position:
               
583-887
               

               
Cow position:
               
chr5:70617585-70617301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
587-898
               

               
Cow position:
               
chr5:26057816-26057504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
588-898
               

               
Cow position:
               
chr5:71621616-71621929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
598-897
               

               
Cow position:
               
chr5:48546027-48545735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
606-898
               

               
Cow position:
               
chr5:49221831-49222125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
630-898
               

               
Cow position:
               
chr5:18704298-18704032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
637-892
               

               
Cow position:
               
chr5:58013175-58013436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 46
               

               
Conread position:
               
638-897
               

               
Cow position:
               
chr5:3788858-3788599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-897
               

               
Cow position:
               
chr5:14631768-14632026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 38
               

               
Conread position:
               
638-897
               

               
Cow position:
               
chr5:34299501-34299249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-897
               

               
Cow position:
               
chr5:39392439-39392692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:2917096-2916836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
133, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:4016251-4016511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:12679959-12680224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:25901831-25902098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:25929059-25929316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:28222598-28222855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:31120576-31120836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
188, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:32953957-32953698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:34524725-34524981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr5:41954771-41955022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
643-891
               

               
Cow position:
               
chr5:37423779-37423526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
194, 40
               

               
Conread position:
               
643-892
               

               
Cow position:
               
chr5:48225948-48226197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr5:7141476-7141731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr5:47080899-47080648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
170, 39
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr5:57614551-57614799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
191, 40
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr5:59278769-59278516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
199, 40
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr5:68337868-68338121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
643-899
               

               
Cow position:
               
chr5:4349370-4349630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
643-899
               

               
Cow position:
               
chr5:13701713-13701466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 36
               

               
Conread position:
               
643-900
               

               
Cow position:
               
chr5:55833222-55833475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
644-884
               

               
Cow position:
               
chr5:7583383-7583623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
198, 39
               

               
Conread position:
               
644-894
               

               
Cow position:
               
chr5:68585528-68585276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 40
               

               
Conread position:
               
645-900
               

               
Cow position:
               
chr5:50390495-50390750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 38
               

               
Conread position:
               
647-897
               

               
Cow position:
               
chr5:54858427-54858672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
652-898
               

               
Cow position:
               
chr5:6537578-6537341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
168, 31
               

               
Conread position:
               
687-897
               

               
Cow position:
               
chr5:63778289-63778077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
696-898
               

               
Cow position:
               
chr5:51819405-51819609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
707-889
               

               
Cow position:
               
chr5:21221213-21221393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
129, 59
               

               
Conread position:
               
712-894
               

               
Cow position:
               
chr5:32955107-32955291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 75
               

               
Conread position:
               
713-900
               

               
Cow position:
               
chr5:68591274-68591095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
714-889
               

               
Cow position:
               
chr5:38267533-38267705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
717-898
               

               
Cow position:
               
chr5:28235213-28235396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
56, 69
               

               
Conread position:
               
718-872
               

               
Cow position:
               
chr5:59451819-59451973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
731-900
               

               
Cow position:
               
chr5:3694241-3694414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
754-897
               

               
Cow position:
               
chr5:45840103-45840241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 33
               
Show alignments to all cow chromosomes.