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Cow genome map

           
Conread name:
           
Ss1.1-rcbl0_002410.5.5
        

               
Conread position:
               
68-505
               

               
Cow position:
               
chr9:1937888-1938347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 167
               

               
Conread position:
               
70-572
               

               
Cow position:
               
chr9:33219162-33218663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
78-410
               

               
Cow position:
               
chr9:41728047-41728369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
87-517
               

               
Cow position:
               
chr9:4268198-4267747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
88-288
               

               
Cow position:
               
chr9:36826699-36826895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
89-297
               

               
Cow position:
               
chr9:1323870-1323660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
90-550
               

               
Cow position:
               
chr9:23388865-23388412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
267, 5
               

               
Conread position:
               
90-552
               

               
Cow position:
               
chr9:33597788-33598249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
318, 19
               

               
Conread position:
               
92-560
               

               
Cow position:
               
chr9:19067584-19068073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
92-571
               

               
Cow position:
               
chr9:44467555-44467061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
93-395
               

               
Cow position:
               
chr9:17840879-17840579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
266, 41
               

               
Conread position:
               
93-547
               

               
Cow position:
               
chr9:7362820-7363290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 157
               

               
Conread position:
               
97-521
               

               
Cow position:
               
chr9:45141792-45141368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
97-560
               

               
Cow position:
               
chr9:55084519-55084021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 191
               

               
Conread position:
               
98-368
               

               
Cow position:
               
chr9:8562623-8562890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
99-551
               

               
Cow position:
               
chr9:18253098-18252656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
99-579
               

               
Cow position:
               
chr9:10118843-10118367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
100-332
               

               
Cow position:
               
chr9:18226927-18226701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
101-555
               

               
Cow position:
               
chr9:54716792-54716351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
285, 94
               

               
Conread position:
               
103-418
               

               
Cow position:
               
chr9:33584875-33584557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
103-560
               

               
Cow position:
               
chr9:45285727-45285255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 17
               

               
Conread position:
               
104-560
               

               
Cow position:
               
chr9:1751156-1751611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
104-571
               

               
Cow position:
               
chr9:5763831-5763342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
109-318
               

               
Cow position:
               
chr9:34811287-34811496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr9:55354425-55354659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
112-560
               

               
Cow position:
               
chr9:46316975-46316512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 164
               

               
Conread position:
               
114-560
               

               
Cow position:
               
chr9:18342552-18342998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 111
               

               
Conread position:
               
128-569
               

               
Cow position:
               
chr9:56772913-56773364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 77
               

               
Conread position:
               
131-559
               

               
Cow position:
               
chr9:29824871-29825304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
118, 42
               

               
Conread position:
               
133-560
               

               
Cow position:
               
chr9:34689748-34689336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
227, 41
               

               
Conread position:
               
137-569
               

               
Cow position:
               
chr9:35167027-35167454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
151-567
               

               
Cow position:
               
chr9:9461798-9461372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
215, 68
               

               
Conread position:
               
172-408
               

               
Cow position:
               
chr9:32982202-32981963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
181-391
               

               
Cow position:
               
chr9:53751078-53750863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
181-541
               

               
Cow position:
               
chr9:3782252-3782620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
183-528
               

               
Cow position:
               
chr9:767262-766906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
129, 31
               

               
Conread position:
               
185-410
               

               
Cow position:
               
chr9:52267863-52267646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
168, 35
               

               
Conread position:
               
185-569
               

               
Cow position:
               
chr9:18380757-18381146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 30
               

               
Conread position:
               
186-560
               

               
Cow position:
               
chr9:6934180-6933796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
204, 45
               

               
Conread position:
               
186-560
               

               
Cow position:
               
chr9:37016791-37017160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 40
               

               
Conread position:
               
188-560
               

               
Cow position:
               
chr9:55795654-55796030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
189-558
               

               
Cow position:
               
chr9:33940502-33940881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
189-565
               

               
Cow position:
               
chr9:51204618-51205002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 364
               

               
Conread position:
               
189-574
               

               
Cow position:
               
chr9:50081144-50080756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
154, 31
               

               
Conread position:
               
191-364
               

               
Cow position:
               
chr9:57131393-57131559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
191-396
               

               
Cow position:
               
chr9:29195133-29194926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 195
               

               
Conread position:
               
191-408
               

               
Cow position:
               
chr9:53109146-53109361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
169, 32
               

               
Conread position:
               
191-552
               

               
Cow position:
               
chr9:34286697-34287062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 29
               

               
Conread position:
               
191-557
               

               
Cow position:
               
chr9:51620340-51620708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
205, 24
               

               
Conread position:
               
191-560
               

               
Cow position:
               
chr9:37069666-37069293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
76, 279
               

               
Conread position:
               
193-396
               

               
Cow position:
               
chr9:7952802-7952998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chr9:5245745-5246124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
6, 292
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chr9:9406153-9405779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
162, 40
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chr9:17741042-17740667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 23
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chr9:24887104-24887473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chr9:33823015-33823367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 22
               

               
Conread position:
               
193-572
               

               
Cow position:
               
chr9:28726830-28726437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
195-557
               

               
Cow position:
               
chr9:31079177-31078812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 28
               

               
Conread position:
               
195-559
               

               
Cow position:
               
chr9:20847838-20848211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 14
               

               
Conread position:
               
195-560
               

               
Cow position:
               
chr9:13169766-13169395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
195-560
               

               
Cow position:
               
chr9:13205664-13205295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
161, 28
               

               
Conread position:
               
195-560
               

               
Cow position:
               
chr9:36491005-36490619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 298
               

               
Conread position:
               
196-456
               

               
Cow position:
               
chr9:54493038-54493299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
165, 24
               

               
Conread position:
               
197-410
               

               
Cow position:
               
chr9:5263401-5263612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
197-410
               

               
Cow position:
               
chr9:6596326-6596124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chr9:58452171-58451823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 22
               

               
Conread position:
               
197-566
               

               
Cow position:
               
chr9:35100789-35101149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr9:40542040-40542409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
146, 23
               

               
Conread position:
               
199-394
               

               
Cow position:
               
chr9:37199028-37199218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
199-560
               

               
Cow position:
               
chr9:13670539-13670913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 17
               

               
Conread position:
               
199-571
               

               
Cow position:
               
chr9:59013433-59013047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
201-567
               

               
Cow position:
               
chr9:5219264-5218897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
203-453
               

               
Cow position:
               
chr9:54615390-54615150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
203-494
               

               
Cow position:
               
chr9:61302910-61303217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
154, 17
               

               
Conread position:
               
203-574
               

               
Cow position:
               
chr9:64091589-64091979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
206-379
               

               
Cow position:
               
chr9:41785125-41785291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
206-410
               

               
Cow position:
               
chr9:12910490-12910291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
160, 20
               

               
Conread position:
               
206-451
               

               
Cow position:
               
chr9:39011556-39011306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 14
               

               
Conread position:
               
206-560
               

               
Cow position:
               
chr9:19902990-19903328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
206, 149
               

               
Conread position:
               
206-560
               

               
Cow position:
               
chr9:36445528-36445897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
206-569
               

               
Cow position:
               
chr9:43870888-43871258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
209-553
               

               
Cow position:
               
chr9:5500767-5501120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
209-567
               

               
Cow position:
               
chr9:21888081-21888452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
180, 101
               

               
Conread position:
               
210-410
               

               
Cow position:
               
chr9:49293231-49293035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
210-560
               

               
Cow position:
               
chr9:11146720-11146379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
212-387
               

               
Cow position:
               
chr9:34024613-34024789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
212-471
               

               
Cow position:
               
chr9:19555290-19555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
142, 63
               

               
Conread position:
               
212-560
               

               
Cow position:
               
chr9:28747606-28747246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 147
               

               
Conread position:
               
212-571
               

               
Cow position:
               
chr9:23431233-23430854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 44
               

               
Conread position:
               
215-410
               

               
Cow position:
               
chr9:58670660-58670848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
215-529
               

               
Cow position:
               
chr9:43757455-43757768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
216-490
               

               
Cow position:
               
chr9:19493547-19493253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
216-569
               

               
Cow position:
               
chr9:5509644-5510010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
175, 16
               

               
Conread position:
               
218-591
               

               
Cow position:
               
chr9:62357608-62357221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
221-380
               

               
Cow position:
               
chr9:63361796-63361635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
221-479
               

               
Cow position:
               
chr9:4341236-4340971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
221-502
               

               
Cow position:
               
chr9:48627951-48628250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 150
               

               
Conread position:
               
221-548
               

               
Cow position:
               
chr9:17872187-17871843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
132, 252
               

               
Conread position:
               
221-555
               

               
Cow position:
               
chr9:26279246-26278902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 128
               

               
Conread position:
               
221-555
               

               
Cow position:
               
chr9:34375001-34374659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 198
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr9:18073173-18072842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
143, 69
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr9:20416583-20416236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
143, 80
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr9:34958133-34957776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 339
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chr9:41679668-41680010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
221-566
               

               
Cow position:
               
chr9:57897187-57896843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
212, 128
               

               
Conread position:
               
221-567
               

               
Cow position:
               
chr9:9403256-9402902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
221-569
               

               
Cow position:
               
chr9:56453262-56453618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
221-572
               

               
Cow position:
               
chr9:6952024-6952379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 255
               

               
Conread position:
               
221-572
               

               
Cow position:
               
chr9:8636590-8636946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 149
               

               
Conread position:
               
221-573
               

               
Cow position:
               
chr9:33119965-33119592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
221-577
               

               
Cow position:
               
chr9:20090969-20091332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 152
               

               
Conread position:
               
221-588
               

               
Cow position:
               
chr9:9596029-9595652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
222-534
               

               
Cow position:
               
chr9:18217175-18216850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
176, 135
               

               
Conread position:
               
222-556
               

               
Cow position:
               
chr9:55118011-55118350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
132, 62
               

               
Conread position:
               
222-558
               

               
Cow position:
               
chr9:64155927-64155582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
222-566
               

               
Cow position:
               
chr9:52000943-52001289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
150, 30
               

               
Conread position:
               
222-577
               

               
Cow position:
               
chr9:55256628-55256256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
123, 138
               

               
Conread position:
               
222-589
               

               
Cow position:
               
chr9:5327182-5327557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
164, 131
               

               
Conread position:
               
223-516
               

               
Cow position:
               
chr9:43623194-43623492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
223-560
               

               
Cow position:
               
chr9:26403711-26404065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 12
               

               
Conread position:
               
223-560
               

               
Cow position:
               
chr9:44921476-44921136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 181
               

               
Conread position:
               
223-572
               

               
Cow position:
               
chr9:32371826-32371471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
152, 52
               

               
Conread position:
               
225-393
               

               
Cow position:
               
chr9:8628990-8628822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
225-567
               

               
Cow position:
               
chr9:38792942-38793302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
39, 141
               

               
Conread position:
               
225-569
               

               
Cow position:
               
chr9:9552017-9552373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 216
               

               
Conread position:
               
226-572
               

               
Cow position:
               
chr9:56032387-56032040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
185, 127
               

               
Conread position:
               
228-394
               

               
Cow position:
               
chr9:9686482-9686318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
162, 82
               

               
Conread position:
               
228-430
               

               
Cow position:
               
chr9:23956050-23955855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
228-505
               

               
Cow position:
               
chr9:62908089-62907819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
255, 61
               

               
Conread position:
               
228-511
               

               
Cow position:
               
chr9:53762624-53762928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
228-522
               

               
Cow position:
               
chr9:11319704-11319394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 271
               

               
Conread position:
               
228-535
               

               
Cow position:
               
chr9:50139215-50139532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
90, 133
               

               
Conread position:
               
228-554
               

               
Cow position:
               
chr9:6879709-6880040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
139, 61
               

               
Conread position:
               
228-556
               

               
Cow position:
               
chr9:11299750-11299425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
182, 60
               

               
Conread position:
               
228-557
               

               
Cow position:
               
chr9:16300639-16300297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
115, 250
               

               
Conread position:
               
228-559
               

               
Cow position:
               
chr9:33101185-33100867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr9:5319552-5319905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr9:5757058-5756727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
142, 111
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr9:6192530-6192183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 122
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr9:10309066-10308731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
125, 50
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr9:54528444-54528791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
169, 66
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr9:54677194-54677498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
167, 76
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chr9:55287959-55287615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
185, 61
               

               
Conread position:
               
228-566
               

               
Cow position:
               
chr9:44915167-44914813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 248
               

               
Conread position:
               
228-571
               

               
Cow position:
               
chr9:10144545-10144184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
228-572
               

               
Cow position:
               
chr9:29006487-29006849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 238
               

               
Conread position:
               
228-572
               

               
Cow position:
               
chr9:61738852-61739205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 262
               

               
Conread position:
               
229-442
               

               
Cow position:
               
chr9:3378685-3378906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
229-560
               

               
Cow position:
               
chr9:21460220-21459881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 60
               

               
Conread position:
               
229-572
               

               
Cow position:
               
chr9:64345065-64344730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
229-577
               

               
Cow position:
               
chr9:49688894-49689231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
230-409
               

               
Cow position:
               
chr9:28754749-28754929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
230-454
               

               
Cow position:
               
chr9:25556904-25557139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
232-560
               

               
Cow position:
               
chr9:52578603-52578257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
235-560
               

               
Cow position:
               
chr9:5227235-5226889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
235-571
               

               
Cow position:
               
chr9:7634208-7634556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 247
               

               
Conread position:
               
236-560
               

               
Cow position:
               
chr9:44832114-44831781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
237-584
               

               
Cow position:
               
chr9:41958845-41958494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
240-460
               

               
Cow position:
               
chr9:43875777-43875542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
240-567
               

               
Cow position:
               
chr9:19714022-19714353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 115
               

               
Conread position:
               
241-560
               

               
Cow position:
               
chr9:8288561-8288894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
241-560
               

               
Cow position:
               
chr9:24997574-24997240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
156, 31
               

               
Conread position:
               
241-569
               

               
Cow position:
               
chr9:8998292-8998641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
114, 246
               

               
Conread position:
               
241-569
               

               
Cow position:
               
chr9:28947805-28948138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 68
               

               
Conread position:
               
242-560
               

               
Cow position:
               
chr9:22114693-22114357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
243-572
               

               
Cow position:
               
chr9:26345023-26344696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 88
               

               
Conread position:
               
247-572
               

               
Cow position:
               
chr9:3379088-3379401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
105, 147
               

               
Conread position:
               
248-560
               

               
Cow position:
               
chr9:9199832-9199509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
250-560
               

               
Cow position:
               
chr9:15983120-15982802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
140, 131
               

               
Conread position:
               
257-541
               

               
Cow position:
               
chr9:58979360-58979658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
134, 29
               

               
Conread position:
               
257-559
               

               
Cow position:
               
chr9:48107157-48106844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
139, 112
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chr9:35904786-35904475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 96
               

               
Conread position:
               
257-569
               

               
Cow position:
               
chr9:41789243-41789563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
141, 115
               

               
Conread position:
               
257-577
               

               
Cow position:
               
chr9:3070453-3070131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 128
               

               
Conread position:
               
258-555
               

               
Cow position:
               
chr9:1949877-1950190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 103
               

               
Conread position:
               
258-558
               

               
Cow position:
               
chr9:28983143-28983455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:5433592-5433907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
106, 238
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:9823546-9823243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:11201550-11201855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:20989498-20989178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
40, 237
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:47925884-47926182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
100, 195
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:49983129-49982821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
124, 154
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:52407124-52407446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 221
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chr9:63745775-63746080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
258-569
               

               
Cow position:
               
chr9:54681469-54681787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chr9:19637668-19637352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
139, 47
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chr9:32307271-32306952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
132, 52
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chr9:63597793-63598109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
258-572
               

               
Cow position:
               
chr9:4861344-4861678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
109, 306
               

               
Conread position:
               
258-572
               

               
Cow position:
               
chr9:8937112-8937437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 131
               

               
Conread position:
               
258-587
               

               
Cow position:
               
chr9:64559922-64559582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
154, 46
               

               
Conread position:
               
258-606
               

               
Cow position:
               
chr9:5209540-5209901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
259-566
               

               
Cow position:
               
chr9:5268514-5268839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
259-571
               

               
Cow position:
               
chr9:9625050-9624740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
260-559
               

               
Cow position:
               
chr9:34902139-34901842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
260-560
               

               
Cow position:
               
chr9:10355572-10355283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
172, 10
               

               
Conread position:
               
260-567
               

               
Cow position:
               
chr9:10667061-10666742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 12
               

               
Conread position:
               
261-548
               

               
Cow position:
               
chr9:20318609-20318314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
131, 98
               

               
Conread position:
               
261-549
               

               
Cow position:
               
chr9:5162087-5161801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 135
               

               
Conread position:
               
261-556
               

               
Cow position:
               
chr9:38184503-38184206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
122, 131
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:1847018-1846735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:12428537-12428227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
135, 53
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:14974956-14974650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
32, 37
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:15805960-15805645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:17634860-17634555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:19539064-19539373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
121, 9
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:22152122-22151812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chr9:53413275-53412973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
135, 49
               

               
Conread position:
               
261-567
               

               
Cow position:
               
chr9:45756326-45756640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
91, 150
               

               
Conread position:
               
261-569
               

               
Cow position:
               
chr9:35375389-35375706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
261-569
               

               
Cow position:
               
chr9:60110213-60110519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
261-571
               

               
Cow position:
               
chr9:35849867-35850186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
132, 97
               

               
Conread position:
               
261-572
               

               
Cow position:
               
chr9:31077707-31077389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 216
               

               
Conread position:
               
261-577
               

               
Cow position:
               
chr9:22318312-22318632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
261-591
               

               
Cow position:
               
chr9:25964870-25964514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
261-601
               

               
Cow position:
               
chr9:53258091-53257745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
262-512
               

               
Cow position:
               
chr9:49847170-49847422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
262-554
               

               
Cow position:
               
chr9:214497-214195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
146, 77
               

               
Conread position:
               
262-580
               

               
Cow position:
               
chr9:8337991-8338327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
263-528
               

               
Cow position:
               
chr9:32815617-32815882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 91
               

               
Conread position:
               
263-552
               

               
Cow position:
               
chr9:3931926-3932235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
263-552
               

               
Cow position:
               
chr9:22638067-22638368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
133, 123
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chr9:14960912-14961224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chr9:21030273-21030592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chr9:54924583-54924902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 95
               

               
Conread position:
               
264-577
               

               
Cow position:
               
chr9:47875994-47875654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 306
               

               
Conread position:
               
268-569
               

               
Cow position:
               
chr9:38343860-38344181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
269-548
               

               
Cow position:
               
chr9:36827106-36827389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
270-589
               

               
Cow position:
               
chr9:9416423-9416101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
276-555
               

               
Cow position:
               
chr9:3410760-3411040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
277-581
               

               
Cow position:
               
chr9:22360989-22361312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 278
               

               
Conread position:
               
278-560
               

               
Cow position:
               
chr9:1952290-1951994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
118, 222
               

               
Conread position:
               
283-549
               

               
Cow position:
               
chr9:6225470-6225187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
289-560
               

               
Cow position:
               
chr9:9516775-9516495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
290-559
               

               
Cow position:
               
chr9:20961288-20961013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
294-554
               

               
Cow position:
               
chr9:34742728-34742460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
295-579
               

               
Cow position:
               
chr9:36586799-36586523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
266, 58
               

               
Conread position:
               
297-560
               

               
Cow position:
               
chr9:58134021-58133748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
96, 258
               

               
Conread position:
               
297-571
               

               
Cow position:
               
chr9:10127674-10127382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
299-571
               

               
Cow position:
               
chr9:15951156-15950867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
300-496
               

               
Cow position:
               
chr9:30195216-30195425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
309-560
               

               
Cow position:
               
chr9:23027815-23028068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 46
               

               
Conread position:
               
311-560
               

               
Cow position:
               
chr9:21840085-21840351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 192
               

               
Conread position:
               
311-560
               

               
Cow position:
               
chr9:28773134-28773393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
311-571
               

               
Cow position:
               
chr9:1712463-1712199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 160
               

               
Conread position:
               
312-559
               

               
Cow position:
               
chr9:18419205-18419438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
312-567
               

               
Cow position:
               
chr9:14853436-14853171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
314-577
               

               
Cow position:
               
chr9:10761333-10761056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
315-522
               

               
Cow position:
               
chr9:5238413-5238634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
318-560
               

               
Cow position:
               
chr9:53602447-53602689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
320-560
               

               
Cow position:
               
chr9:34666442-34666684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 52
               

               
Conread position:
               
325-553
               

               
Cow position:
               
chr9:41652813-41653058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
329-575
               

               
Cow position:
               
chr9:2034204-2034463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
56, 178
               

               
Conread position:
               
332-577
               

               
Cow position:
               
chr9:49403793-49404048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
340-571
               

               
Cow position:
               
chr9:55364936-55365177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
345-551
               

               
Cow position:
               
chr9:8546366-8546585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 138
               

               
Conread position:
               
349-559
               

               
Cow position:
               
chr9:3924675-3924891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
354-560
               

               
Cow position:
               
chr9:26099411-26099613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
358-560
               

               
Cow position:
               
chr9:3216284-3216481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
358-572
               

               
Cow position:
               
chr9:36623385-36623163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
360-550
               

               
Cow position:
               
chr9:34762787-34762584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
362-560
               

               
Cow position:
               
chr9:20237934-20237732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
367-560
               

               
Cow position:
               
chr9:48343690-48343877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
179, 24
               

               
Conread position:
               
377-591
               

               
Cow position:
               
chr9:54997929-54997715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
381-560
               

               
Cow position:
               
chr9:5621932-5621754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
381-560
               

               
Cow position:
               
chr9:16745778-16745953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
381-567
               

               
Cow position:
               
chr9:9723781-9723600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
382-552
               

               
Cow position:
               
chr9:34093331-34093158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
382-560
               

               
Cow position:
               
chr9:26828723-26828545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
382-560
               

               
Cow position:
               
chr9:31662567-31662745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
382-560
               

               
Cow position:
               
chr9:32812448-32812622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
382-560
               

               
Cow position:
               
chr9:44108726-44108554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
382-566
               

               
Cow position:
               
chr9:37528557-37528738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
383-560
               

               
Cow position:
               
chr9:40060229-40060050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 131
               

               
Conread position:
               
384-549
               

               
Cow position:
               
chr9:25502438-25502273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
384-577
               

               
Cow position:
               
chr9:52725115-52724926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
388-558
               

               
Cow position:
               
chr9:62034739-62034906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
399-560
               

               
Cow position:
               
chr9:25933383-25933221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
404-571
               

               
Cow position:
               
chr9:32306315-32306154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 61
               

               
Conread position:
               
405-560
               

               
Cow position:
               
chr9:5399843-5399991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
405-560
               

               
Cow position:
               
chr9:29185008-29184858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
407-548
               

               
Cow position:
               
chr9:42956484-42956625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
407-560
               

               
Cow position:
               
chr9:27077120-27076975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
407-572
               

               
Cow position:
               
chr9:1984391-1984233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
154, 28
               

               
Conread position:
               
407-602
               

               
Cow position:
               
chr9:38692415-38692221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
408-529
               

               
Cow position:
               
chr9:8562965-8563086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-541
               

               
Cow position:
               
chr9:38875449-38875317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
408-551
               

               
Cow position:
               
chr9:11068344-11068202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
408-551
               

               
Cow position:
               
chr9:34919135-34918999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
408-552
               

               
Cow position:
               
chr9:41995837-41995982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
408-555
               

               
Cow position:
               
chr9:32676807-32676957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
408-556
               

               
Cow position:
               
chr9:1350319-1350174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
408-556
               

               
Cow position:
               
chr9:47869134-47869278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
408-559
               

               
Cow position:
               
chr9:20465589-20465438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:3807614-3807461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:4128656-4128507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
129, 73
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:4928755-4928905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:5532075-5532228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 137
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:8418254-8418100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:8997677-8997832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:9443470-9443322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:10877744-10877590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:18008736-18008591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:20406761-20406912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:20810937-20810788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:24726552-24726402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:25969470-25969622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:26310682-26310834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:30138256-30138401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:31626274-31626425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:31640195-31640042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:34400162-34400315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:38961307-38961161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:41412188-41412035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:41416479-41416626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:47955101-47954949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 122
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:49544930-49544785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:50076185-50076341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 137
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:53608267-53608118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:58131600-58131448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:58673862-58674017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:60037781-60037931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 68
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr9:61997472-61997320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
17, 136
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr9:17785334-17785178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
408-568
               

               
Cow position:
               
chr9:54611108-54610946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
408-569
               

               
Cow position:
               
chr9:42585498-42585340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
408-571
               

               
Cow position:
               
chr9:57951195-57951040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
408-572
               

               
Cow position:
               
chr9:22227955-22227796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
408-572
               

               
Cow position:
               
chr9:36999934-36999772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
408-577
               

               
Cow position:
               
chr9:18140169-18140003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
408-577
               

               
Cow position:
               
chr9:49764784-49764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
154, 16
               

               
Conread position:
               
408-591
               

               
Cow position:
               
chr9:1520610-1520419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
409-513
               

               
Cow position:
               
chr9:33584326-33584223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
409-538
               

               
Cow position:
               
chr9:33681813-33681938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr9:2398499-2398356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr9:8869014-8868860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr9:13994312-13994464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr9:44709953-44710097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr9:47472819-47472972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr9:58439652-58439506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr9:64516972-64516821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
409-571
               

               
Cow position:
               
chr9:36067037-36067193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
409-572
               

               
Cow position:
               
chr9:27052208-27052044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr9:18002822-18002673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr9:27697599-27697453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr9:34355800-34355651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr9:35533823-35533676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chr9:53109661-53109798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
410-577
               

               
Cow position:
               
chr9:45171037-45170875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
151, 23
               

               
Conread position:
               
411-556
               

               
Cow position:
               
chr9:16218519-16218371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
411-560
               

               
Cow position:
               
chr9:29338907-29338756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
411-567
               

               
Cow position:
               
chr9:32787979-32787825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
412-559
               

               
Cow position:
               
chr9:41283155-41283303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 96
               

               
Conread position:
               
412-560
               

               
Cow position:
               
chr9:42998336-42998195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
413-560
               

               
Cow position:
               
chr9:35369010-35369156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
413-565
               

               
Cow position:
               
chr9:58669509-58669660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
5, 122
               

               
Conread position:
               
413-577
               

               
Cow position:
               
chr9:51928830-51928996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
117, 126
               

               
Conread position:
               
413-583
               

               
Cow position:
               
chr9:38385741-38385569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
415-549
               

               
Cow position:
               
chr9:51557231-51557097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
415-560
               

               
Cow position:
               
chr9:2977513-2977657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
417-560
               

               
Cow position:
               
chr9:24428484-24428342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
420-566
               

               
Cow position:
               
chr9:62668538-62668684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
420-593
               

               
Cow position:
               
chr9:59795143-59794970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 95
               

               
Conread position:
               
421-560
               

               
Cow position:
               
chr9:21963472-21963333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
421-566
               

               
Cow position:
               
chr9:34310171-34310316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
422-560
               

               
Cow position:
               
chr9:49292960-49292827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
422-572
               

               
Cow position:
               
chr9:5455432-5455583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
423-572
               

               
Cow position:
               
chr9:30020117-30020266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
424-558
               

               
Cow position:
               
chr9:52505163-52505029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
424-559
               

               
Cow position:
               
chr9:52484772-52484642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:6089242-6089373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:13993804-13993940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:16538667-16538531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:22443478-22443336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:25958561-25958689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:30664638-30664503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:30749441-30749309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:33846933-33846799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 62
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:42497973-42498105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chr9:54666047-54666181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
424-561
               

               
Cow position:
               
chr9:9490939-9491069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
424-566
               

               
Cow position:
               
chr9:16086399-16086544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
424-567
               

               
Cow position:
               
chr9:34697153-34697013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
424-567
               

               
Cow position:
               
chr9:48017679-48017540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
424-567
               

               
Cow position:
               
chr9:54178108-54177962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 39
               

               
Conread position:
               
424-569
               

               
Cow position:
               
chr9:5393191-5393336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
137, 119
               

               
Conread position:
               
424-569
               

               
Cow position:
               
chr9:32732541-32732400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
118, 39
               

               
Conread position:
               
424-572
               

               
Cow position:
               
chr9:29841031-29841176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chr9:8534541-8534390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
118, 42
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chr9:15054021-15054172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
425-579
               

               
Cow position:
               
chr9:3762495-3762652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
426-556
               

               
Cow position:
               
chr9:3594384-3594253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
426-560
               

               
Cow position:
               
chr9:7409928-7410058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
426-581
               

               
Cow position:
               
chr9:20738852-20739000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
427-560
               

               
Cow position:
               
chr9:36843982-36844107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
427-566
               

               
Cow position:
               
chr9:15215535-15215399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
427-898
               

               
Cow position:
               
chr9:56154989-56155444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 17
               

               
Conread position:
               
428-559
               

               
Cow position:
               
chr9:40105621-40105751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 78
               

               
Conread position:
               
428-560
               

               
Cow position:
               
chr9:36354130-36354006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
428-567
               

               
Cow position:
               
chr9:18029022-18028879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 70
               

               
Conread position:
               
430-560
               

               
Cow position:
               
chr9:26086213-26086343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
432-572
               

               
Cow position:
               
chr9:27345290-27345148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
466-560
               

               
Cow position:
               
chr9:1855462-1855555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
559-898
               

               
Cow position:
               
chr9:64012449-64012782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 127
               

               
Conread position:
               
560-893
               

               
Cow position:
               
chr9:29787878-29788217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 127
               

               
Conread position:
               
560-897
               

               
Cow position:
               
chr9:5525840-5526195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
67, 125
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr9:3311399-3311057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 127
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr9:4940719-4941056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr9:22319926-22320265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
64, 79
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr9:27897789-27897459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 92
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr9:34240320-34240661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr9:35543749-35544090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chr9:3389024-3389355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 6
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chr9:9560488-9560823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chr9:42902661-42903000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 125
               

               
Conread position:
               
563-892
               

               
Cow position:
               
chr9:17301356-17301687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 122
               

               
Conread position:
               
563-892
               

               
Cow position:
               
chr9:30438487-30438151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
563-897
               

               
Cow position:
               
chr9:59196633-59196295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
564-809
               

               
Cow position:
               
chr9:50840208-50839965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-820
               

               
Cow position:
               
chr9:28680975-28680721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-835
               

               
Cow position:
               
chr9:36484859-36485125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
564-897
               

               
Cow position:
               
chr9:44168365-44168029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:128076-128413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
62, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:1249222-1249559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:1991760-1992097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:2681350-2681013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:17017529-17017187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:26277429-26277096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:31417729-31418065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:44203294-44203630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:48795517-48795854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chr9:56176545-56176209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
577-874
               

               
Cow position:
               
chr9:54995404-54995109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
138, 48
               

               
Conread position:
               
577-898
               

               
Cow position:
               
chr9:9312555-9312879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
577-898
               

               
Cow position:
               
chr9:50326611-50326283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
582-830
               

               
Cow position:
               
chr9:5430224-5429979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-839
               

               
Cow position:
               
chr9:5452883-5453138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-842
               

               
Cow position:
               
chr9:51591384-51591128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
582-896
               

               
Cow position:
               
chr9:9015831-9015515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-896
               

               
Cow position:
               
chr9:28658292-28658608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-897
               

               
Cow position:
               
chr9:2806605-2806917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
582-897
               

               
Cow position:
               
chr9:2835238-2835554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
582-897
               

               
Cow position:
               
chr9:32292789-32292487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
582-897
               

               
Cow position:
               
chr9:59538899-59538583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:202533-202852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:1000222-999903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:1099351-1099032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:3757074-3757393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 115
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:5627576-5627257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:10643881-10644200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:10745887-10746202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:10856777-10856461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:10939481-10939162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:14002797-14002478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:17303215-17303530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:18539422-18539102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:21412069-21411748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:22655570-22655252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:27291204-27291523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:27782133-27782452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:28024576-28024248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 215
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:30674832-30674509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:32972124-32971816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
191, 43
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:35747126-35747432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
582-898
               

               
Cow position:
               
chr9:46668041-46668360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
590-898
               

               
Cow position:
               
chr9:27487132-27487435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
598-879
               

               
Cow position:
               
chr9:49754649-49754920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
628-885
               

               
Cow position:
               
chr9:27930180-27929928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
629-898
               

               
Cow position:
               
chr9:26100724-26100988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
630-884
               

               
Cow position:
               
chr9:52514832-52514577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
638-867
               

               
Cow position:
               
chr9:8283779-8283550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
134, 45
               

               
Conread position:
               
638-896
               

               
Cow position:
               
chr9:3797595-3797850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
136, 45
               

               
Conread position:
               
638-897
               

               
Cow position:
               
chr9:2213839-2213585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:1063001-1063262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:1071587-1071847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:5516895-5516633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:8738799-8739057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:9198802-9198547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:15053184-15053444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:16178293-16178033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
135, 48
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:19078357-19078096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:20941154-20940895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
135, 47
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:31113852-31113594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
133, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:37175503-37175243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:50003157-50002897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
638-898
               

               
Cow position:
               
chr9:53530420-53530171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
638-899
               

               
Cow position:
               
chr9:6251969-6251708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
642-899
               

               
Cow position:
               
chr9:14344624-14344870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
200, 41
               

               
Conread position:
               
643-892
               

               
Cow position:
               
chr9:16750606-16750357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
643-896
               

               
Cow position:
               
chr9:10110332-10110089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
643-897
               

               
Cow position:
               
chr9:11504365-11504112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
643-897
               

               
Cow position:
               
chr9:30490272-30490017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
131, 51
               

               
Conread position:
               
643-897
               

               
Cow position:
               
chr9:62717221-62716976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr9:1430137-1430379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr9:15986738-15986491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
187, 40
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr9:22442182-22441934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr9:33950515-33950770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr9:50775539-50775281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
643-898
               

               
Cow position:
               
chr9:56301747-56302001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
643-900
               

               
Cow position:
               
chr9:9648889-9648641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
645-889
               

               
Cow position:
               
chr9:4306378-4306621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
193, 36
               

               
Conread position:
               
650-897
               

               
Cow position:
               
chr9:59431203-59430954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 36
               

               
Conread position:
               
652-898
               

               
Cow position:
               
chr9:52525842-52525596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 31
               

               
Conread position:
               
655-897
               

               
Cow position:
               
chr9:35157571-35157812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
658-892
               

               
Cow position:
               
chr9:32984865-32984630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
660-898
               

               
Cow position:
               
chr9:30282334-30282572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
664-889
               

               
Cow position:
               
chr9:3960473-3960698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
665-892
               

               
Cow position:
               
chr9:61238270-61238495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
686-898
               

               
Cow position:
               
chr9:49117401-49117190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
686-900
               

               
Cow position:
               
chr9:2102463-2102255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
713-898
               

               
Cow position:
               
chr9:11440051-11440238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
129, 70
               

               
Conread position:
               
713-898
               

               
Cow position:
               
chr9:26421350-26421537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
713-898
               

               
Cow position:
               
chr9:30829377-30829190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
715-899
               

               
Cow position:
               
chr9:27098963-27098785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
721-898
               

               
Cow position:
               
chr9:22473671-22473850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
52, 66
               
Show alignments to all cow chromosomes.