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Cow genome map

           
Conread name:
           
Ss1.1-rcbl0_002410.5.5
        

               
Conread position:
               
85-566
               

               
Cow position:
               
chrX:9416408-9416919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
123, 248
               

               
Conread position:
               
86-336
               

               
Cow position:
               
chrX:34508818-34508562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
87-393
               

               
Cow position:
               
chrX:6599527-6599822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
89-572
               

               
Cow position:
               
chrX:152161-151668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
92-483
               

               
Cow position:
               
chrX:615996-616409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
92-549
               

               
Cow position:
               
chrX:40480603-40481081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 127
               

               
Conread position:
               
95-522
               

               
Cow position:
               
chrX:32821281-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
95-560
               

               
Cow position:
               
chrX:878111-878591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 382
               

               
Conread position:
               
95-566
               

               
Cow position:
               
chrX:30337714-30338152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chrX:40531787-40532084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 127
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chrX:27668712-27668950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
99-558
               

               
Cow position:
               
chrX:5872568-5872095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
99-560
               

               
Cow position:
               
chrX:7695998-7695541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
290, 121
               

               
Conread position:
               
100-548
               

               
Cow position:
               
chrX:38853447-38852988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
100-569
               

               
Cow position:
               
chrX:38071519-38072001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
103-488
               

               
Cow position:
               
chrX:5118252-5118654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
196, 11
               

               
Conread position:
               
104-359
               

               
Cow position:
               
chrX:2936201-2935952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
104-560
               

               
Cow position:
               
chrX:40557424-40557896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
105-560
               

               
Cow position:
               
chrX:27393788-27394234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
284, 18
               

               
Conread position:
               
109-530
               

               
Cow position:
               
chrX:31312282-31311835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
109-579
               

               
Cow position:
               
chrX:7513740-7513276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 189
               

               
Conread position:
               
110-569
               

               
Cow position:
               
chrX:31373780-31373344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
111-560
               

               
Cow position:
               
chrX:40269732-40269256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
142-569
               

               
Cow position:
               
chrX:13382534-13382095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
144-567
               

               
Cow position:
               
chrX:6690050-6690475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
174-560
               

               
Cow position:
               
chrX:8797430-8797028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
174-577
               

               
Cow position:
               
chrX:41884231-41884656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
177-560
               

               
Cow position:
               
chrX:27771796-27772176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
182, 38
               

               
Conread position:
               
178-560
               

               
Cow position:
               
chrX:33640146-33639751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
179-560
               

               
Cow position:
               
chrX:17726146-17725758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 41
               

               
Conread position:
               
180-528
               

               
Cow position:
               
chrX:42235350-42235722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
162, 311
               

               
Conread position:
               
180-567
               

               
Cow position:
               
chrX:37072562-37072179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 36
               

               
Conread position:
               
182-547
               

               
Cow position:
               
chrX:35273534-35273144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
182-560
               

               
Cow position:
               
chrX:32310274-32309886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
183-560
               

               
Cow position:
               
chrX:22822216-22821827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
169, 52
               

               
Conread position:
               
184-567
               

               
Cow position:
               
chrX:32623735-32623356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 31
               

               
Conread position:
               
187-409
               

               
Cow position:
               
chrX:35985979-35985764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
170, 33
               

               
Conread position:
               
187-572
               

               
Cow position:
               
chrX:41878772-41879164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
161, 29
               

               
Conread position:
               
187-577
               

               
Cow position:
               
chrX:33493939-33493537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 28
               

               
Conread position:
               
189-427
               

               
Cow position:
               
chrX:20957398-20957176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
189-524
               

               
Cow position:
               
chrX:36068179-36067835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
175, 27
               

               
Conread position:
               
189-560
               

               
Cow position:
               
chrX:4632695-4633071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
190-506
               

               
Cow position:
               
chrX:4278956-4279281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
206, 51
               

               
Conread position:
               
191-511
               

               
Cow position:
               
chrX:4399277-4398954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
191-560
               

               
Cow position:
               
chrX:11656239-11655866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 29
               

               
Conread position:
               
191-560
               

               
Cow position:
               
chrX:13647627-13648004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 25
               

               
Conread position:
               
191-569
               

               
Cow position:
               
chrX:45502308-45501918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 14
               

               
Conread position:
               
193-410
               

               
Cow position:
               
chrX:29050404-29050192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
162, 32
               

               
Conread position:
               
193-532
               

               
Cow position:
               
chrX:8869245-8869601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 23
               

               
Conread position:
               
193-559
               

               
Cow position:
               
chrX:6414197-6413827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
202, 23
               

               
Conread position:
               
193-560
               

               
Cow position:
               
chrX:22482530-22482909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 96
               

               
Conread position:
               
193-571
               

               
Cow position:
               
chrX:37780952-37781341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 22
               

               
Conread position:
               
195-410
               

               
Cow position:
               
chrX:9252004-9252217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
195-505
               

               
Cow position:
               
chrX:14275589-14275901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
195-566
               

               
Cow position:
               
chrX:31436628-31436254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 19
               

               
Conread position:
               
197-560
               

               
Cow position:
               
chrX:1466319-1465967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 228
               

               
Conread position:
               
198-560
               

               
Cow position:
               
chrX:13191405-13191764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
199-560
               

               
Cow position:
               
chrX:23092023-23091661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
200-560
               

               
Cow position:
               
chrX:6659498-6659153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
203-397
               

               
Cow position:
               
chrX:19394704-19394510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
203-408
               

               
Cow position:
               
chrX:4152885-4153088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
146, 17
               

               
Conread position:
               
203-560
               

               
Cow position:
               
chrX:43115296-43114951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
161, 12
               

               
Conread position:
               
205-560
               

               
Cow position:
               
chrX:30420803-30421159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 38
               

               
Conread position:
               
206-424
               

               
Cow position:
               
chrX:45977069-45976853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
151, 20
               

               
Conread position:
               
206-560
               

               
Cow position:
               
chrX:38006628-38006988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 24
               

               
Conread position:
               
206-567
               

               
Cow position:
               
chrX:11082474-11082840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
164, 285
               

               
Conread position:
               
206-591
               

               
Cow position:
               
chrX:15815229-15814845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
205, 9
               

               
Conread position:
               
208-483
               

               
Cow position:
               
chrX:38066309-38066597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
149, 176
               

               
Conread position:
               
209-560
               

               
Cow position:
               
chrX:11938790-11939144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
209-560
               

               
Cow position:
               
chrX:17042823-17042470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
127, 8
               

               
Conread position:
               
210-547
               

               
Cow position:
               
chrX:4825692-4826035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
139, 65
               

               
Conread position:
               
210-560
               

               
Cow position:
               
chrX:42469798-42470157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chrX:47345472-47345265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 144
               

               
Conread position:
               
212-489
               

               
Cow position:
               
chrX:21986149-21986446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
145, 102
               

               
Conread position:
               
215-577
               

               
Cow position:
               
chrX:35413749-35413394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
187, 86
               

               
Conread position:
               
216-563
               

               
Cow position:
               
chrX:37574978-37574633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 151
               

               
Conread position:
               
216-577
               

               
Cow position:
               
chrX:618871-619246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 36
               

               
Conread position:
               
217-541
               

               
Cow position:
               
chrX:7278048-7277718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
168, 138
               

               
Conread position:
               
220-479
               

               
Cow position:
               
chrX:34314160-34313890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
221-351
               

               
Cow position:
               
chrX:4467100-4466970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
221-369
               

               
Cow position:
               
chrX:12972817-12972666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chrX:11325965-11326141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
125, 28
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chrX:22392852-22393027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chrX:27306587-27306411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chrX:42927691-42927860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
221-410
               

               
Cow position:
               
chrX:26881432-26881623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
221-454
               

               
Cow position:
               
chrX:34315654-34315407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
221-463
               

               
Cow position:
               
chrX:2523549-2523780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
181, 131
               

               
Conread position:
               
221-468
               

               
Cow position:
               
chrX:40685195-40685463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
221-471
               

               
Cow position:
               
chrX:37986358-37986098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
145, 54
               

               
Conread position:
               
221-492
               

               
Cow position:
               
chrX:20584461-20584166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
221-537
               

               
Cow position:
               
chrX:10252067-10252379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
221-549
               

               
Cow position:
               
chrX:40035307-40035655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 92
               

               
Conread position:
               
221-555
               

               
Cow position:
               
chrX:22115184-22115497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
221-559
               

               
Cow position:
               
chrX:4043734-4044069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
177, 63
               

               
Conread position:
               
221-559
               

               
Cow position:
               
chrX:12979701-12980050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chrX:6544387-6544036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 68
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chrX:9201681-9201327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 130
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chrX:9635058-9635401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
147, 73
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chrX:13177343-13177685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
221-560
               

               
Cow position:
               
chrX:37232540-37232189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 119
               

               
Conread position:
               
221-568
               

               
Cow position:
               
chrX:22074933-22074572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 74
               

               
Conread position:
               
221-569
               

               
Cow position:
               
chrX:14883822-14884192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
221-569
               

               
Cow position:
               
chrX:34377075-34376727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
199, 123
               

               
Conread position:
               
221-570
               

               
Cow position:
               
chrX:35543020-35542660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 35
               

               
Conread position:
               
221-571
               

               
Cow position:
               
chrX:17795114-17794753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 136
               

               
Conread position:
               
221-572
               

               
Cow position:
               
chrX:39558216-39558581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
134, 47
               

               
Conread position:
               
221-572
               

               
Cow position:
               
chrX:45429889-45430250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
187, 153
               

               
Conread position:
               
221-575
               

               
Cow position:
               
chrX:34411979-34411606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 238
               

               
Conread position:
               
221-576
               

               
Cow position:
               
chrX:42380979-42381337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 180
               

               
Conread position:
               
222-512
               

               
Cow position:
               
chrX:169414-169698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
188, 83
               

               
Conread position:
               
222-550
               

               
Cow position:
               
chrX:14973614-14973945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
176, 85
               

               
Conread position:
               
222-555
               

               
Cow position:
               
chrX:30543152-30543501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
130, 316
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chrX:126899-126572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
222-560
               

               
Cow position:
               
chrX:17964390-17964742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
223-592
               

               
Cow position:
               
chrX:25815772-25816151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
225-511
               

               
Cow position:
               
chrX:34792183-34792482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
170, 46
               

               
Conread position:
               
225-571
               

               
Cow position:
               
chrX:18694802-18695153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
170, 64
               

               
Conread position:
               
226-549
               

               
Cow position:
               
chrX:45846229-45845886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
127, 91
               

               
Conread position:
               
226-560
               

               
Cow position:
               
chrX:1503455-1503119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
172, 81
               

               
Conread position:
               
226-560
               

               
Cow position:
               
chrX:42171168-42171519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 31
               

               
Conread position:
               
227-535
               

               
Cow position:
               
chrX:47484138-47484467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
169, 13
               

               
Conread position:
               
227-560
               

               
Cow position:
               
chrX:15597153-15596818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
176, 13
               

               
Conread position:
               
228-386
               

               
Cow position:
               
chrX:19273581-19273744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
228-396
               

               
Cow position:
               
chrX:12082198-12082366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
228-400
               

               
Cow position:
               
chrX:34836938-34837103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chrX:5135393-5135580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chrX:18272932-18273113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chrX:19469380-19469561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chrX:41192830-41192647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
142, 165
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chrX:46429693-46429875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
124, 171
               

               
Conread position:
               
228-483
               

               
Cow position:
               
chrX:23561984-23561729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
228-511
               

               
Cow position:
               
chrX:27145730-27145452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 136
               

               
Conread position:
               
228-555
               

               
Cow position:
               
chrX:34532646-34532312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 245
               

               
Conread position:
               
228-557
               

               
Cow position:
               
chrX:22624602-22624264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
128, 297
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:917242-917589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
158, 109
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:1514293-1514621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
173, 61
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:7572032-7571686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:9650898-9651266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:11717657-11718000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
136, 261
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:17888297-17888626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 81
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:23497565-23497883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
143, 73
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:27431792-27432139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 179
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:35224422-35224082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
133, 120
               

               
Conread position:
               
228-560
               

               
Cow position:
               
chrX:38642375-38642040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 136
               

               
Conread position:
               
228-561
               

               
Cow position:
               
chrX:29601702-29602054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
131, 250
               

               
Conread position:
               
228-567
               

               
Cow position:
               
chrX:12437146-12437466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
184, 41
               

               
Conread position:
               
228-570
               

               
Cow position:
               
chrX:34565410-34565066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
122, 47
               

               
Conread position:
               
228-571
               

               
Cow position:
               
chrX:15007023-15007383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
161, 136
               

               
Conread position:
               
228-572
               

               
Cow position:
               
chrX:11073065-11073424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 227
               

               
Conread position:
               
228-572
               

               
Cow position:
               
chrX:38094394-38094758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
228-577
               

               
Cow position:
               
chrX:33855094-33855471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
228-577
               

               
Cow position:
               
chrX:44961877-44961509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 243
               

               
Conread position:
               
228-579
               

               
Cow position:
               
chrX:38549573-38549208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
229-459
               

               
Cow position:
               
chrX:41871192-41870950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
230-557
               

               
Cow position:
               
chrX:37910569-37910235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
135, 185
               

               
Conread position:
               
232-557
               

               
Cow position:
               
chrX:24424279-24424605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
158, 149
               

               
Conread position:
               
234-530
               

               
Cow position:
               
chrX:47362503-47362802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
122, 224
               

               
Conread position:
               
238-560
               

               
Cow position:
               
chrX:1615927-1616268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
240-560
               

               
Cow position:
               
chrX:21064397-21064066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
145, 251
               

               
Conread position:
               
240-577
               

               
Cow position:
               
chrX:25713909-25713563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
241-552
               

               
Cow position:
               
chrX:3130685-3130369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
241-555
               

               
Cow position:
               
chrX:42492410-42492729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
157, 114
               

               
Conread position:
               
241-560
               

               
Cow position:
               
chrX:10959282-10959623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
241-560
               

               
Cow position:
               
chrX:31442716-31443041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 251
               

               
Conread position:
               
241-566
               

               
Cow position:
               
chrX:10411873-10412212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
156, 116
               

               
Conread position:
               
241-572
               

               
Cow position:
               
chrX:7509252-7508906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 40
               

               
Conread position:
               
241-572
               

               
Cow position:
               
chrX:38936813-38936468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
110, 233
               

               
Conread position:
               
246-559
               

               
Cow position:
               
chrX:20801877-20801560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 159
               

               
Conread position:
               
246-560
               

               
Cow position:
               
chrX:17630693-17631022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
246-560
               

               
Cow position:
               
chrX:45968256-45967942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
153, 92
               

               
Conread position:
               
246-577
               

               
Cow position:
               
chrX:23513909-23514256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 64
               

               
Conread position:
               
246-577
               

               
Cow position:
               
chrX:26625563-26625915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
247-560
               

               
Cow position:
               
chrX:36840970-36840653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
162, 54
               

               
Conread position:
               
247-571
               

               
Cow position:
               
chrX:11856538-11856197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
6, 240
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chrX:17542058-17541744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 209
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chrX:28865909-28866212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
257-560
               

               
Cow position:
               
chrX:45414207-45414520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
138, 85
               

               
Conread position:
               
257-561
               

               
Cow position:
               
chrX:13913172-13912858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 219
               

               
Conread position:
               
257-570
               

               
Cow position:
               
chrX:17662501-17662828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
257-572
               

               
Cow position:
               
chrX:27680495-27680170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 226
               

               
Conread position:
               
257-577
               

               
Cow position:
               
chrX:42498951-42499267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
258-400
               

               
Cow position:
               
chrX:44095356-44095214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 140
               

               
Conread position:
               
258-473
               

               
Cow position:
               
chrX:5919588-5919359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
258-538
               

               
Cow position:
               
chrX:29544781-29545078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 251
               

               
Conread position:
               
258-547
               

               
Cow position:
               
chrX:10831391-10831704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
258-555
               

               
Cow position:
               
chrX:41733103-41733403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 75
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:3154147-3154466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 5
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:7646347-7646038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
87, 96
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:9041148-9041449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:12290815-12290515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 94
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:23583657-23583338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:29289674-29289356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
133, 95
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:34441358-34441670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:35268957-35268670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
132, 43
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:35387831-35388127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:38964204-38963889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
108, 199
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:40692655-40692958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:41084011-41083705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 143
               

               
Conread position:
               
258-560
               

               
Cow position:
               
chrX:46532399-46532729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
107, 185
               

               
Conread position:
               
258-561
               

               
Cow position:
               
chrX:36283436-36283124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chrX:21672656-21672319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chrX:31250484-31250160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
138, 204
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chrX:39545883-39546205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
96, 51
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chrX:42247086-42247417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
258-572
               

               
Cow position:
               
chrX:2324692-2324402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
303, 5
               

               
Conread position:
               
258-572
               

               
Cow position:
               
chrX:25338283-25337946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
258-572
               

               
Cow position:
               
chrX:28134434-28134113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
146, 10
               

               
Conread position:
               
258-574
               

               
Cow position:
               
chrX:42011377-42011046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
258-577
               

               
Cow position:
               
chrX:21004780-21004446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
108, 218
               

               
Conread position:
               
258-577
               

               
Cow position:
               
chrX:34543880-34543549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
113, 235
               

               
Conread position:
               
258-581
               

               
Cow position:
               
chrX:20697513-20697850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 96
               

               
Conread position:
               
258-591
               

               
Cow position:
               
chrX:25035286-25035641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
127, 95
               

               
Conread position:
               
258-592
               

               
Cow position:
               
chrX:37489815-37489476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 213
               

               
Conread position:
               
259-560
               

               
Cow position:
               
chrX:6488671-6488366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
139, 25
               

               
Conread position:
               
259-560
               

               
Cow position:
               
chrX:34402095-34401777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
92, 242
               

               
Conread position:
               
259-571
               

               
Cow position:
               
chrX:34503015-34502688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
132, 96
               

               
Conread position:
               
260-504
               

               
Cow position:
               
chrX:25207761-25208011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
110, 99
               

               
Conread position:
               
260-556
               

               
Cow position:
               
chrX:47145179-47144871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
113, 80
               

               
Conread position:
               
260-560
               

               
Cow position:
               
chrX:4865327-4865031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 50
               

               
Conread position:
               
260-560
               

               
Cow position:
               
chrX:19690309-19689998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
134, 82
               

               
Conread position:
               
260-572
               

               
Cow position:
               
chrX:20339798-20340124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
261-536
               

               
Cow position:
               
chrX:16996585-16996310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 134
               

               
Conread position:
               
261-539
               

               
Cow position:
               
chrX:45149261-45148975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
261-542
               

               
Cow position:
               
chrX:33000998-33000701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
261-551
               

               
Cow position:
               
chrX:3580037-3579735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
134, 92
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chrX:11844148-11844461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chrX:23563698-23564017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
135, 110
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chrX:27508931-27509240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chrX:27514951-27514648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
93, 134
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chrX:38935372-38935061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
125, 43
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chrX:46722641-46722961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
261-560
               

               
Cow position:
               
chrX:47344389-47344074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 202
               

               
Conread position:
               
261-566
               

               
Cow position:
               
chrX:34238812-34238495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 226
               

               
Conread position:
               
261-566
               

               
Cow position:
               
chrX:48652628-48652953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
261-567
               

               
Cow position:
               
chrX:22813155-22812835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
261-571
               

               
Cow position:
               
chrX:40183261-40183582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 93
               

               
Conread position:
               
261-572
               

               
Cow position:
               
chrX:2467977-2467646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
261-573
               

               
Cow position:
               
chrX:17231828-17231500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
261-573
               

               
Cow position:
               
chrX:36976044-36975715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
261-897
               

               
Cow position:
               
chrX:21642389-21643051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
262-547
               

               
Cow position:
               
chrX:13429220-13429492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 66
               

               
Conread position:
               
263-559
               

               
Cow position:
               
chrX:7497334-7497026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
91, 75
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chrX:6265508-6265806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
104, 27
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chrX:6278407-6278726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chrX:15305204-15305508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 203
               

               
Conread position:
               
263-560
               

               
Cow position:
               
chrX:31948844-31949151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 214
               

               
Conread position:
               
263-561
               

               
Cow position:
               
chrX:24827398-24827105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
263-577
               

               
Cow position:
               
chrX:23414277-23414606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
87, 77
               

               
Conread position:
               
264-551
               

               
Cow position:
               
chrX:29542127-29542430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
98, 237
               

               
Conread position:
               
265-538
               

               
Cow position:
               
chrX:43973634-43973360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
266-530
               

               
Cow position:
               
chrX:23785735-23785463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
124, 97
               

               
Conread position:
               
269-560
               

               
Cow position:
               
chrX:8517960-8517656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
269-566
               

               
Cow position:
               
chrX:5638084-5638395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
129, 79
               

               
Conread position:
               
270-537
               

               
Cow position:
               
chrX:36961726-36961438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
270-569
               

               
Cow position:
               
chrX:48800622-48800307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
270-577
               

               
Cow position:
               
chrX:25281399-25281706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 46
               

               
Conread position:
               
271-577
               

               
Cow position:
               
chrX:16416592-16416270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
273-560
               

               
Cow position:
               
chrX:678474-678788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
79, 194
               

               
Conread position:
               
273-560
               

               
Cow position:
               
chrX:11589507-11589812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
276-569
               

               
Cow position:
               
chrX:24105702-24105396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
120, 99
               

               
Conread position:
               
280-577
               

               
Cow position:
               
chrX:9855370-9855062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
280-577
               

               
Cow position:
               
chrX:9954211-9953903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
281-559
               

               
Cow position:
               
chrX:13785287-13785586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 274
               

               
Conread position:
               
284-560
               

               
Cow position:
               
chrX:26875811-26876101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
79, 211
               

               
Conread position:
               
285-547
               

               
Cow position:
               
chrX:7361796-7362058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 30
               

               
Conread position:
               
285-560
               

               
Cow position:
               
chrX:11313711-11313998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
285-582
               

               
Cow position:
               
chrX:46372697-46372983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
288-601
               

               
Cow position:
               
chrX:18248357-18248052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
290-560
               

               
Cow position:
               
chrX:14900669-14900941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
290-560
               

               
Cow position:
               
chrX:34192734-34192457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
291-541
               

               
Cow position:
               
chrX:39938460-39938724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
292-560
               

               
Cow position:
               
chrX:48227563-48227833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
92, 102
               

               
Conread position:
               
293-543
               

               
Cow position:
               
chrX:905395-905142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
293-571
               

               
Cow position:
               
chrX:30729350-30729636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
294-548
               

               
Cow position:
               
chrX:38114228-38113979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
294-557
               

               
Cow position:
               
chrX:2186312-2186041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
296-560
               

               
Cow position:
               
chrX:1978570-1978285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
296-577
               

               
Cow position:
               
chrX:19210357-19210634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
297-553
               

               
Cow position:
               
chrX:26940447-26940705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
297-560
               

               
Cow position:
               
chrX:34991093-34990821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
68, 200
               

               
Conread position:
               
298-560
               

               
Cow position:
               
chrX:40789268-40788984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
298-572
               

               
Cow position:
               
chrX:3160972-3161249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 111
               

               
Conread position:
               
304-560
               

               
Cow position:
               
chrX:42994663-42994394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
304-566
               

               
Cow position:
               
chrX:19015487-19015216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
53, 175
               

               
Conread position:
               
304-569
               

               
Cow position:
               
chrX:35681392-35681115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 175
               

               
Conread position:
               
321-572
               

               
Cow position:
               
chrX:38439514-38439240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
326-560
               

               
Cow position:
               
chrX:48371119-48370876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
331-560
               

               
Cow position:
               
chrX:48536657-48536885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
332-577
               

               
Cow position:
               
chrX:6640128-6639886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
333-560
               

               
Cow position:
               
chrX:20583044-20582810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
5, 129
               

               
Conread position:
               
338-571
               

               
Cow position:
               
chrX:10415531-10415758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
342-560
               

               
Cow position:
               
chrX:21256025-21255817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
349-571
               

               
Cow position:
               
chrX:42086861-42086630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
352-577
               

               
Cow position:
               
chrX:48676067-48675839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
354-556
               

               
Cow position:
               
chrX:40567604-40567383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
355-566
               

               
Cow position:
               
chrX:6607404-6607195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
355-572
               

               
Cow position:
               
chrX:37067315-37067100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
196, 17
               

               
Conread position:
               
359-556
               

               
Cow position:
               
chrX:31473503-31473306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
188, 47
               

               
Conread position:
               
362-582
               

               
Cow position:
               
chrX:4554379-4554156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 148
               

               
Conread position:
               
364-560
               

               
Cow position:
               
chrX:16789861-16790057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
364-590
               

               
Cow position:
               
chrX:31745071-31745299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
367-564
               

               
Cow position:
               
chrX:20653368-20653170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 58
               

               
Conread position:
               
379-564
               

               
Cow position:
               
chrX:13245550-13245366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
182, 12
               

               
Conread position:
               
380-560
               

               
Cow position:
               
chrX:42507689-42507867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
381-560
               

               
Cow position:
               
chrX:3654561-3654384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
381-566
               

               
Cow position:
               
chrX:26883181-26883360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
382-561
               

               
Cow position:
               
chrX:41403931-41403751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
382-561
               

               
Cow position:
               
chrX:41410479-41410299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
382-567
               

               
Cow position:
               
chrX:28111459-28111279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
382-634
               

               
Cow position:
               
chrX:7721941-7721687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
383-567
               

               
Cow position:
               
chrX:41743863-41743686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
384-549
               

               
Cow position:
               
chrX:6234502-6234658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
384-560
               

               
Cow position:
               
chrX:13058535-13058360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
384-566
               

               
Cow position:
               
chrX:33632132-33631950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
385-557
               

               
Cow position:
               
chrX:11675014-11674847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
389-560
               

               
Cow position:
               
chrX:35409608-35409448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
391-560
               

               
Cow position:
               
chrX:21663263-21663089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
17, 144
               

               
Conread position:
               
395-560
               

               
Cow position:
               
chrX:1728474-1728637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
395-561
               

               
Cow position:
               
chrX:41192625-41192466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
395-572
               

               
Cow position:
               
chrX:39346842-39347019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 29
               

               
Conread position:
               
399-557
               

               
Cow position:
               
chrX:25163752-25163601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
399-566
               

               
Cow position:
               
chrX:42841113-42841276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
399-577
               

               
Cow position:
               
chrX:11448133-11448310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
401-569
               

               
Cow position:
               
chrX:13868624-13868464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
404-560
               

               
Cow position:
               
chrX:10107041-10107195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
404-567
               

               
Cow position:
               
chrX:22873334-22873171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
405-560
               

               
Cow position:
               
chrX:45043496-45043338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
406-567
               

               
Cow position:
               
chrX:25283219-25283373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
407-554
               

               
Cow position:
               
chrX:46315448-46315593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
407-560
               

               
Cow position:
               
chrX:8558530-8558683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
407-560
               

               
Cow position:
               
chrX:19930582-19930436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
407-567
               

               
Cow position:
               
chrX:36249932-36250089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
407-573
               

               
Cow position:
               
chrX:46429929-46430093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
134, 59
               

               
Conread position:
               
407-577
               

               
Cow position:
               
chrX:4942825-4942987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
408-532
               

               
Cow position:
               
chrX:45874927-45874806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
408-539
               

               
Cow position:
               
chrX:30832919-30833045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
408-541
               

               
Cow position:
               
chrX:17908358-17908485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
408-547
               

               
Cow position:
               
chrX:32420148-32420011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
408-549
               

               
Cow position:
               
chrX:9425812-9425951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
408-551
               

               
Cow position:
               
chrX:16324036-16324175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
408-558
               

               
Cow position:
               
chrX:28846953-28847097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
408-558
               

               
Cow position:
               
chrX:37843651-37843502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
408-558
               

               
Cow position:
               
chrX:45566566-45566412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:3653690-3653543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:4750376-4750518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:8899958-8899804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:9997407-9997553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:15485696-15485848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:15545822-15545677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:19019178-19019332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:21593216-21593063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:27106191-27106038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:30962945-30963092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:32020191-32020342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:34754259-34754412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:35042153-35041999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:38967576-38967430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:40647914-40647758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:42339014-42339156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:42461816-42461966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:42855343-42855188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:42874912-42874758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chrX:44731526-44731374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-566
               

               
Cow position:
               
chrX:36778340-36778180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chrX:17498013-17497869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chrX:40116349-40116198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
408-569
               

               
Cow position:
               
chrX:15147259-15147416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
408-569
               

               
Cow position:
               
chrX:25238105-25237948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
408-569
               

               
Cow position:
               
chrX:37836517-37836356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
408-569
               

               
Cow position:
               
chrX:40452281-40452443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
408-571
               

               
Cow position:
               
chrX:14599461-14599297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
408-571
               

               
Cow position:
               
chrX:14924929-14924768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
408-571
               

               
Cow position:
               
chrX:41167036-41167196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
408-577
               

               
Cow position:
               
chrX:47248856-47249026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
408-583
               

               
Cow position:
               
chrX:877098-877265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
408-590
               

               
Cow position:
               
chrX:12309457-12309642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
408-591
               

               
Cow position:
               
chrX:11806085-11806271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
409-541
               

               
Cow position:
               
chrX:1176052-1176184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
409-545
               

               
Cow position:
               
chrX:38218637-38218500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
409-547
               

               
Cow position:
               
chrX:26285909-26285772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
409-552
               

               
Cow position:
               
chrX:27174923-27174782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
409-555
               

               
Cow position:
               
chrX:41238443-41238578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
409-556
               

               
Cow position:
               
chrX:7718783-7718637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chrX:2383416-2383269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chrX:7806309-7806157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 109
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chrX:12249730-12249585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 52
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chrX:15139618-15139765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chrX:41674037-41673883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chrX:45694033-45693886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
409-567
               

               
Cow position:
               
chrX:28098045-28097898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
409-567
               

               
Cow position:
               
chrX:32128054-32128207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 55
               

               
Conread position:
               
409-571
               

               
Cow position:
               
chrX:754890-754726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
409-572
               

               
Cow position:
               
chrX:32978326-32978489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
152, 91
               

               
Conread position:
               
409-577
               

               
Cow position:
               
chrX:23970311-23970151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
409-581
               

               
Cow position:
               
chrX:20710002-20709828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
410-558
               

               
Cow position:
               
chrX:13265697-13265838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chrX:26440852-26441000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
410-560
               

               
Cow position:
               
chrX:31260700-31260850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
410-566
               

               
Cow position:
               
chrX:35609915-35609760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
410-567
               

               
Cow position:
               
chrX:21665666-21665820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
410-571
               

               
Cow position:
               
chrX:27516455-27516300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
412-558
               

               
Cow position:
               
chrX:7425393-7425247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
412-560
               

               
Cow position:
               
chrX:11746770-11746622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
412-567
               

               
Cow position:
               
chrX:21795420-21795269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
412-624
               

               
Cow position:
               
chrX:29770249-29770465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
413-558
               

               
Cow position:
               
chrX:46989867-46990002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
413-560
               

               
Cow position:
               
chrX:11562079-11561934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
413-560
               

               
Cow position:
               
chrX:37299523-37299376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 129
               

               
Conread position:
               
413-569
               

               
Cow position:
               
chrX:17743987-17743830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
413-577
               

               
Cow position:
               
chrX:17271362-17271527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
413-577
               

               
Cow position:
               
chrX:43049272-43049104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
414-571
               

               
Cow position:
               
chrX:10916671-10916522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 52
               

               
Conread position:
               
414-571
               

               
Cow position:
               
chrX:33205072-33205224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
414-572
               

               
Cow position:
               
chrX:9252254-9252411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
148, 14
               

               
Conread position:
               
416-555
               

               
Cow position:
               
chrX:33466532-33466398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
420-560
               

               
Cow position:
               
chrX:2523809-2523950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
420-560
               

               
Cow position:
               
chrX:29049880-29049750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
421-555
               

               
Cow position:
               
chrX:26619446-26619578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
421-557
               

               
Cow position:
               
chrX:25419243-25419378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
421-558
               

               
Cow position:
               
chrX:48236731-48236593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
421-572
               

               
Cow position:
               
chrX:9838057-9837905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
422-571
               

               
Cow position:
               
chrX:18812168-18812027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
424-554
               

               
Cow position:
               
chrX:46771056-46771186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 53
               

               
Conread position:
               
424-556
               

               
Cow position:
               
chrX:29509532-29509660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
424-556
               

               
Cow position:
               
chrX:42587514-42587645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
424-557
               

               
Cow position:
               
chrX:25036787-25036918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:7351211-7351079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:7382235-7382103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:9360798-9360663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:10437751-10437885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:16541762-16541896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:18456308-18456172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:19188849-19188716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:33020397-33020266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
424-560
               

               
Cow position:
               
chrX:45787563-45787434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
424-567
               

               
Cow position:
               
chrX:48211064-48211209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
424-569
               

               
Cow position:
               
chrX:8492842-8492988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
424-572
               

               
Cow position:
               
chrX:16531909-16531766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chrX:2029305-2029152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
138, 119
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chrX:25617996-25618150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chrX:38840801-38840650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 14
               

               
Conread position:
               
424-577
               

               
Cow position:
               
chrX:47243362-47243517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
426-560
               

               
Cow position:
               
chrX:4123741-4123615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
426-567
               

               
Cow position:
               
chrX:16762676-16762544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 55
               

               
Conread position:
               
427-549
               

               
Cow position:
               
chrX:47046606-47046729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
427-560
               

               
Cow position:
               
chrX:27446599-27446468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
427-572
               

               
Cow position:
               
chrX:41790535-41790677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 29
               

               
Conread position:
               
428-560
               

               
Cow position:
               
chrX:43527411-43527283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
429-567
               

               
Cow position:
               
chrX:32870876-32871013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
429-567
               

               
Cow position:
               
chrX:47247005-47247136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
434-571
               

               
Cow position:
               
chrX:33538849-33538716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
435-555
               

               
Cow position:
               
chrX:5856422-5856542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
438-577
               

               
Cow position:
               
chrX:33519519-33519381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
440-560
               

               
Cow position:
               
chrX:29193903-29193788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
449-562
               

               
Cow position:
               
chrX:919402-919516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
494-898
               

               
Cow position:
               
chrX:6196282-6196685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 193
               

               
Conread position:
               
547-898
               

               
Cow position:
               
chrX:16086327-16085972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
554-898
               

               
Cow position:
               
chrX:10300639-10300981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
555-898
               

               
Cow position:
               
chrX:22126089-22126427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 6
               

               
Conread position:
               
557-898
               

               
Cow position:
               
chrX:35027996-35027663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
559-784
               

               
Cow position:
               
chrX:38153019-38153246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 127
               

               
Conread position:
               
559-897
               

               
Cow position:
               
chrX:25406062-25406396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
76, 127
               

               
Conread position:
               
559-898
               

               
Cow position:
               
chrX:22818763-22818421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 66
               

               
Conread position:
               
560-826
               

               
Cow position:
               
chrX:25451023-25450752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chrX:3465674-3466015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chrX:14462008-14461665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
561-844
               

               
Cow position:
               
chrX:13431253-13431525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
561-892
               

               
Cow position:
               
chrX:1788244-1787917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 123
               

               
Conread position:
               
561-897
               

               
Cow position:
               
chrX:503195-503524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
561-897
               

               
Cow position:
               
chrX:26623123-26623455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
561-897
               

               
Cow position:
               
chrX:33829727-33829392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chrX:12464689-12464355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chrX:26274828-26274492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chrX:36839399-36839068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
561-898
               

               
Cow position:
               
chrX:43437217-43437557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
561-900
               

               
Cow position:
               
chrX:7810270-7810609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
562-900
               

               
Cow position:
               
chrX:16231173-16231493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
563-890
               

               
Cow position:
               
chrX:21591977-21591647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
563-897
               

               
Cow position:
               
chrX:12312317-12312650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
563-898
               

               
Cow position:
               
chrX:21226164-21225827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 122
               

               
Conread position:
               
563-898
               

               
Cow position:
               
chrX:42732564-42732228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 47
               

               
Conread position:
               
564-779
               

               
Cow position:
               
chrX:8640471-8640254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
564-784
               

               
Cow position:
               
chrX:4623270-4623492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-810
               

               
Cow position:
               
chrX:14459722-14459966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-884
               

               
Cow position:
               
chrX:1013769-1013449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
564-896
               

               
Cow position:
               
chrX:22612093-22611758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-896
               

               
Cow position:
               
chrX:31979156-31979485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-897
               

               
Cow position:
               
chrX:21767317-21766980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
564-897
               

               
Cow position:
               
chrX:22539351-22539689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-897
               

               
Cow position:
               
chrX:39713234-39712901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:2117706-2118043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:2479945-2480281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:2487330-2486999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
209, 73
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:2813792-2814130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:5332748-5333085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:5360693-5360356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:5865829-5865488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:6580618-6580291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:8482134-8481798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:9086393-9086061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:10529101-10529440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:11146652-11146992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 121
               
UCSC Genome Browser

               
Conread position:
               
564-898
               

               
Cow position:
               
chrX:13071762-13072099 (view  custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 122
               
UCSC Genome Browser

               
               
               
Conread position:
564-898

               
               
               
Cow position:
chrX:13092322-13092659 (view  custom track)

               
               
               
Alignm length:
344

               
               
               
Alignm identity:
229

               
               
               
Alignm E-value:
1e-32

               
               
               
Alignm gaps (pig, cow):
61, 122
UCSC Genome Browser

               
               
               
Conread position:
564-898

               
               
               
Cow position:
chrX:13244342-13244005 (view  custom track)

               
               
               
Alignm length:
344

               
               
               
Alignm identity:
232

               
               
               
Alignm E-value:
2e-35

               
               
               
Alignm gaps (pig, cow):
61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:15260932-15261270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:16045655-16045318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:17054254-17053917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:18222096-18221762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:18657121-18657458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:19398461-19398123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:19474465-19474802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:20357316-20357653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:22565001-22565338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:24412710-24412376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:564-898
               
               
               Cow position:chrX:24468438-24468776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:564-898
               
               
               Cow position:chrX:26231075-26231412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:28587666-28587328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:564-898
               
               
               Cow position:chrX:30053785-30054121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:31495421-31495083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:564-898
               
               
               Cow position:chrX:35532539-35532206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:36536046-36536383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:37814834-37814497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:564-898
               
               
               Cow position:chrX:37851821-37851492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 115

               
               
               Conread position:571-892
               
               
               Cow position:chrX:35384175-35384477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):267, 39

               
               
               Conread position:574-898
               
               
               Cow position:chrX:23573134-23573459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 112

               
               
               Conread position:576-898
               
               
               Cow position:chrX:15176767-15177087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:577-861
               
               
               Cow position:chrX:2382137-2381850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:577-880
               
               
               Cow position:chrX:27423598-27423903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-897
               
               
               Cow position:chrX:12308092-12308415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:2560277-2560598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:5281113-5281436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:577-898
               
               
               Cow position:chrX:13929063-13929387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:14125573-14125897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:577-898
               
               
               Cow position:chrX:14597527-14597203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:15978281-15978605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:15992981-15992662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:19608347-19608023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:21389248-21388931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:577-898
               
               
               Cow position:chrX:21582112-21581789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:22810566-22810242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:23134267-23133945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:577-898
               
               
               Cow position:chrX:28753666-28753990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-898
               
               
               Cow position:chrX:29094648-29094968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):196, 61

               
               
               Conread position:577-898
               
               
               Cow position:chrX:29171110-29171434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-899
               
               
               Cow position:chrX:27983683-27984006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:577-900
               
               
               Cow position:chrX:2579091-2578766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:577-900
               
               
               Cow position:chrX:23236566-23236237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:578-898
               
               
               Cow position:chrX:27317900-27317577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:582-791
               
               
               Cow position:chrX:509423-509633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:582-816
               
               
               Cow position:chrX:2607085-2606850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:582-825
               
               
               Cow position:chrX:16804200-16804441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-825
               
               
               Cow position:chrX:16809147-16809388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-837
               
               
               Cow position:chrX:22837647-22837397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-839
               
               
               Cow position:chrX:5550046-5549791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-894
               
               
               Cow position:chrX:5298575-5298890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-896
               
               
               Cow position:chrX:27591355-27591672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-896
               
               
               Cow position:chrX:30181259-30181576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-897
               
               
               Cow position:chrX:17487974-17488280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:582-897
               
               
               Cow position:chrX:18899157-18899471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:582-898
               
               
               Cow position:chrX:387801-387485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:582-898
               
               
               Cow position:chrX:2879055-2879375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:582-898
               
               
               Cow position:chrX:7120159-7119839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:582-898
               
               
               Cow position:chrX:7754571-7754253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:582-898
               
               
               Cow position:chrX:9010999-9010680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:9095308-9094993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:12144764-12144445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:14782680-14782999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:582-898
               
               
               Cow position:chrX:15621866-15622194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:16702348-16702031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:582-898
               
               
               Cow position:chrX:18951065-18951384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:23279692-23279374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:23387882-23388201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:23453387-23453705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:26755974-26756293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:32064502-32064821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-898
               
               
               Cow position:chrX:38150265-38149946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:582-900
               
               
               Cow position:chrX:27978165-27978477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):191, 44

               
               
               Conread position:583-892
               
               
               Cow position:chrX:34008446-34008138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:583-898
               
               
               Cow position:chrX:30229447-30229765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:584-892
               
               
               Cow position:chrX:3082480-3082785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:584-896
               
               
               Cow position:chrX:15122507-15122813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):189, 18

               
               
               Conread position:588-897
               
               
               Cow position:chrX:18246757-18246459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):185, 75

               
               
               Conread position:592-897
               
               
               Cow position:chrX:24462784-24463087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:593-898
               
               
               Cow position:chrX:15377987-15378290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:593-899
               
               
               Cow position:chrX:3122737-3123041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:597-900
               
               
               Cow position:chrX:29877873-29878180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:599-900
               
               
               Cow position:chrX:17260215-17260522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:610-892
               
               
               Cow position:chrX:8513932-8513648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:616-898
               
               
               Cow position:chrX:30437537-30437254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 36

               
               
               Conread position:619-889
               
               
               Cow position:chrX:20133525-20133797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:624-898
               
               
               Cow position:chrX:12359512-12359237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:637-898
               
               
               Cow position:chrX:33774018-33774275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):136, 45

               
               
               Conread position:638-813
               
               
               Cow position:chrX:4300334-4300504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-892
               
               
               Cow position:chrX:42009237-42008983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):204, 45

               
               
               Conread position:638-894
               
               
               Cow position:chrX:16781889-16781636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-895
               
               
               Cow position:chrX:730955-731209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):136, 45

               
               
               Conread position:638-896
               
               
               Cow position:chrX:3397044-3397290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:638-897
               
               
               Cow position:chrX:29911941-29911682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:2047692-2047433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:3360428-3360171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:638-898
               
               
               Cow position:chrX:5321105-5321365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:19212687-19212950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:19401598-19401339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:20741022-20741281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:24322222-24322481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:30090427-30090676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:638-898
               
               
               Cow position:chrX:31728083-31727823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:35887698-35887439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:38963107-38963367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:638-898
               
               
               Cow position:chrX:41153418-41153158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:639-896
               
               
               Cow position:chrX:18289483-18289725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:642-892
               
               
               Cow position:chrX:29765616-29765362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:643-897
               
               
               Cow position:chrX:12345538-12345286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):180, 40

               
               
               Conread position:643-897
               
               
               Cow position:chrX:30112729-30112482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):199, 46

               
               
               Conread position:643-898
               
               
               Cow position:chrX:672390-672645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:643-898
               
               
               Cow position:chrX:3418615-3418871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:643-898
               
               
               Cow position:chrX:11462392-11462646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:643-898
               
               
               Cow position:chrX:12651889-12652144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:643-898
               
               
               Cow position:chrX:19621962-19621709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:643-898
               
               
               Cow position:chrX:29010071-29009828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:643-898
               
               
               Cow position:chrX:29941782-29941527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:643-898
               
               
               Cow position:chrX:36022753-36022502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:643-899
               
               
               Cow position:chrX:26749667-26749920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):155, 33

               
               
               Conread position:643-900
               
               
               Cow position:chrX:10755170-10754915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:644-898
               
               
               Cow position:chrX:10867249-10867504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:645-897
               
               
               Cow position:chrX:22331171-22331423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:645-898
               
               
               Cow position:chrX:21646681-21646932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:645-900
               
               
               Cow position:chrX:9403097-9403350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):197, 38

               
               
               Conread position:646-898
               
               
               Cow position:chrX:33815225-33815468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:649-875
               
               
               Cow position:chrX:25052410-25052635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):192, 34

               
               
               Conread position:649-897
               
               
               Cow position:chrX:29859846-29860092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:650-898
               
               
               Cow position:chrX:24200594-24200348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):174, 33

               
               
               Conread position:653-898
               
               
               Cow position:chrX:26341609-26341847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):189, 29

               
               
               Conread position:653-898
               
               
               Cow position:chrX:27645647-27645408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:653-899
               
               
               Cow position:chrX:2271212-2270975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:655-897
               
               
               Cow position:chrX:41687203-41686962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:655-898
               
               
               Cow position:chrX:20366582-20366823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:656-900
               
               
               Cow position:chrX:4327100-4327340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):186, 15

               
               
               Conread position:657-891
               
               
               Cow position:chrX:3155929-3156162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:657-898
               
               
               Cow position:chrX:13415839-13416077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:657-898
               
               
               Cow position:chrX:40642804-40642563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:660-898
               
               
               Cow position:chrX:31340080-31340317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):181, 23

               
               
               Conread position:663-898
               
               
               Cow position:chrX:12666747-12666982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:686-897
               
               
               Cow position:chrX:24806996-24807205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:686-898
               
               
               Cow position:chrX:11458248-11458463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 103

               
               
               Conread position:695-898
               
               
               Cow position:chrX:21661509-21661714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:695-898
               
               
               Cow position:chrX:34093275-34093480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:709-898
               
               
               Cow position:chrX:4479939-4479746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):127, 77

               
               
               Conread position:712-898
               
               
               Cow position:chrX:15569376-15569565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:712-900
               
               
               Cow position:chrX:23073682-23073492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:713-898
               
               
               Cow position:chrX:9127617-9127432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:713-898
               
               
               Cow position:chrX:16736541-16736723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 74

               
               
               Conread position:713-898
               
               
               Cow position:chrX:36194436-36194249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 76

               
               
               Conread position:714-898
               
               
               Cow position:chrX:23335368-23335553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):60, 75

               
               
               Conread position:718-898
               
               
               Cow position:chrX:27304471-27304289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:729-898
               
               
               Cow position:chrX:302620-302451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:731-900
               
               
               Cow position:chrX:5668232-5668398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 63
Show alignments to all cow chromosomes.