Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-133
Cow position:
Alignm length: 136
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 1-169
Cow position:
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 168

Conread position: 1-191
Cow position:
Alignm length: 200
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 1-219
Cow position:
Alignm length: 233
Alignm identity: 165
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 1-260
Cow position:
Alignm length: 272
Alignm identity: 188
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 38

Conread position: 1-272
Cow position:
Alignm length: 279
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 174

Conread position: 1-278
Cow position:
Alignm length: 290
Alignm identity: 210
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-306
Cow position:
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 253

Conread position: 1-319
Cow position:
Alignm length: 320
Alignm identity: 215
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 19

Conread position: 1-335
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 111

Conread position: 1-341
Cow position:
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 141

Conread position: 1-363
Cow position:
Alignm length: 374
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 109

Conread position: 1-375
Cow position:
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 1-387
Cow position:
Alignm length: 401
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 192

Conread position: 1-388
Cow position:
Alignm length: 401
Alignm identity: 263
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 11

Conread position: 1-391
Cow position:
Alignm length: 403
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 19

Conread position: 1-393
Cow position:
Alignm length: 411
Alignm identity: 271
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 51, 103

Conread position: 1-396
Cow position:
Alignm length: 410
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-396
Cow position:
Alignm length: 403
Alignm identity: 265
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 126

Conread position: 1-396
Cow position:
Alignm length: 410
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 1-401
Cow position:
Alignm length: 415
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-402
Cow position:
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-403
Cow position:
Alignm length: 434
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 1-405
Cow position:
Alignm length: 418
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 227

Conread position: 1-405
Cow position:
Alignm length: 417
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 168

Conread position: 1-405
Cow position:
Alignm length: 419
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 31

Conread position: 1-405
Cow position:
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 101

Conread position: 1-405
Cow position:
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position:
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 328

Conread position: 1-405
Cow position:
Alignm length: 419
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position:
Alignm length: 420
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 191

Conread position: 1-405
Cow position:
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 19

Conread position: 1-405
Cow position:
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 100

Conread position: 1-405
Cow position:
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 257

Conread position: 1-405
Cow position:
Alignm length: 419
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 245

Conread position: 1-405
Cow position:
Alignm length: 419
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 285

Conread position: 1-405
Cow position:
Alignm length: 418
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-414
Cow position:
Alignm length: 440
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position:
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 137

Conread position: 1-416
Cow position:
Alignm length: 432
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 135

Conread position: 1-416
Cow position:
Alignm length: 430
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 33

Conread position: 1-416
Cow position:
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 34

Conread position: 1-416
Cow position:
Alignm length: 431
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 276

Conread position: 1-416
Cow position:
Alignm length: 430
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position:
Alignm length: 429
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 1-416
Cow position:
Alignm length: 434
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position:
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 126

Conread position: 1-416
Cow position:
Alignm length: 433
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 277

Conread position: 1-417
Cow position:
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-418
Cow position:
Alignm length: 423
Alignm identity: 269
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 145

Conread position: 1-422
Cow position:
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 142

Conread position: 1-438
Cow position:
Alignm length: 453
Alignm identity: 297
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 39, 22

Conread position: 1-442
Cow position:
Alignm length: 458
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 222

Conread position: 1-444
Cow position:
Alignm length: 454
Alignm identity: 302
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 48

Conread position: 1-452
Cow position:
Alignm length: 471
Alignm identity: 298
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 89

Conread position: 1-466
Cow position:
Alignm length: 480
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 273

Conread position: 1-466
Cow position:
Alignm length: 490
Alignm identity: 310
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 109

Conread position: 1-468
Cow position:
Alignm length: 487
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 141

Conread position: 1-468
Cow position:
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 71

Conread position: 1-468
Cow position:
Alignm length: 473
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 1-468
Cow position:
Alignm length: 472
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 98

Conread position: 1-468
Cow position:
Alignm length: 478
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 2-227
Cow position:
Alignm length: 240
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 13

Conread position: 2-252
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 30

Conread position: 2-405
Cow position:
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 177

Conread position: 2-416
Cow position:
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 2-429
Cow position:
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 144

Conread position: 2-435
Cow position:
Alignm length: 445
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 106

Conread position: 3-437
Cow position:
Alignm length: 452
Alignm identity: 293
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 270

Conread position: 6-416
Cow position:
Alignm length: 425
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 6-444
Cow position:
Alignm length: 463
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 137

Conread position: 7-405
Cow position:
Alignm length: 412
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 9-416
Cow position:
Alignm length: 422
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 108

Conread position: 28-416
Cow position:
Alignm length: 403
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 31-405
Cow position:
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 160

Conread position: 40-444
Cow position:
Alignm length: 413
Alignm identity: 271
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 14, 53

Conread position: 41-403
Cow position:
Alignm length: 379
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 196

Conread position: 43-412
Cow position:
Alignm length: 383
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 249

Conread position: 52-435
Cow position:
Alignm length: 395
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 31, 164

Conread position: 56-398
Cow position:
Alignm length: 353
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 42

Conread position: 66-281
Cow position:
Alignm length: 227
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 21, 39

Conread position: 72-468
Cow position:
Alignm length: 410
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 65

Conread position: 89-335
Cow position:
Alignm length: 255
Alignm identity: 189
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 76, 206

Conread position: 90-278
Cow position:
Alignm length: 199
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 92-416
Cow position:
Alignm length: 339
Alignm identity: 221
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 157

Conread position: 112-405
Cow position:
Alignm length: 314
Alignm identity: 223
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 114-445
Cow position:
Alignm length: 342
Alignm identity: 216
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 125

Conread position: 118-412
Cow position:
Alignm length: 302
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 132

Conread position: 122-405
Cow position:
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 141

Conread position: 127-317
Cow position:
Alignm length: 201
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 141

Conread position: 127-401
Cow position:
Alignm length: 284
Alignm identity: 189
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 259

Conread position: 132-468
Cow position:
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 320

Conread position: 189-450
Cow position:
Alignm length: 264
Alignm identity: 171
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 239, 58

Conread position: 191-468
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 127

Conread position: 193-438
Cow position:
Alignm length: 246
Alignm identity: 166
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 125, 0

Conread position: 201-405
Cow position:
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 71, 53

Conread position: 203-405
Cow position:
Alignm length: 207
Alignm identity: 157
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 53, 60

Conread position: 203-431
Cow position:
Alignm length: 231
Alignm identity: 165
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 143, 169

Conread position: 248-416
Cow position:
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 140, 0

Conread position: 259-415
Cow position:
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 141, 0

Conread position: 269-468
Cow position:
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 148, 123

Conread position: 283-405
Cow position:
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 298-410
Cow position:
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 310-416
Cow position:
Alignm length: 107
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.