Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-133
Cow position: chr10:28932436-28932301 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 1-169
Cow position: chr10:65308033-65308205 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 168

Conread position: 1-191
Cow position: chr10:29846700-29846501 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 1-219
Cow position: chr10:19840062-19840294 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 1-260
Cow position: chr10:66175991-66175727 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 38

Conread position: 1-272
Cow position: chr10:28116517-28116242 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 174

Conread position: 1-278
Cow position: chr10:54059445-54059156 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 1-306
Cow position: chr10:276503-276817 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 253

Conread position: 1-319
Cow position: chr10:42664133-42664430 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 215
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 19

Conread position: 1-335
Cow position: chr10:19143429-19143081 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 111

Conread position: 1-341
Cow position: chr10:29632951-29632600 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 141

Conread position: 1-363
Cow position: chr10:24313919-24313551 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 109

Conread position: 1-375
Cow position: chr10:38538588-38538196 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 1-387
Cow position: chr10:46694466-46694067 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 192

Conread position: 1-388
Cow position: chr10:58860766-58860375 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 263
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 11

Conread position: 1-391
Cow position: chr10:7282773-7282374 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 19

Conread position: 1-393
Cow position: chr10:38404598-38404193 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 271
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 51, 103

Conread position: 1-396
Cow position: chr10:124219-124628 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-396
Cow position: chr10:14928558-14928939 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 265
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 126

Conread position: 1-396
Cow position: chr10:62408942-62408539 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 1-401
Cow position: chr10:47906687-47907101 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-402
Cow position: chr10:25565336-25564934 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-403
Cow position: chr10:10478234-10477811 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 1-405
Cow position: chr10:280710-280294 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 227

Conread position: 1-405
Cow position: chr10:4192308-4191899 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 168

Conread position: 1-405
Cow position: chr10:8289893-8290305 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 31

Conread position: 1-405
Cow position: chr10:13365941-13365543 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 101

Conread position: 1-405
Cow position: chr10:14803744-14804163 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr10:16925444-16925862 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 328

Conread position: 1-405
Cow position: chr10:21400762-21400344 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr10:21740842-21740425 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 191

Conread position: 1-405
Cow position: chr10:25359309-25359726 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 19

Conread position: 1-405
Cow position: chr10:32578213-32578615 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 100

Conread position: 1-405
Cow position: chr10:41157357-41157774 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 257

Conread position: 1-405
Cow position: chr10:41567016-41567429 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 245

Conread position: 1-405
Cow position: chr10:41876828-41877245 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 285

Conread position: 1-405
Cow position: chr10:51952696-51952295 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-414
Cow position: chr10:57559639-57559200 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr10:1375446-1375871 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 137

Conread position: 1-416
Cow position: chr10:11685758-11685331 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 135

Conread position: 1-416
Cow position: chr10:21486826-21487253 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 33

Conread position: 1-416
Cow position: chr10:22101151-22101568 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 34

Conread position: 1-416
Cow position: chr10:25498261-25498690 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 276

Conread position: 1-416
Cow position: chr10:32650642-32651071 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr10:34685805-34686232 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 1-416
Cow position: chr10:39854105-39853672 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr10:57990054-57989656 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 126

Conread position: 1-416
Cow position: chr10:62778255-62778686 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 277

Conread position: 1-417
Cow position: chr10:19511515-19511945 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-418
Cow position: chr10:53363886-53364298 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 269
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 145

Conread position: 1-422
Cow position: chr10:41351845-41351410 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 142

Conread position: 1-438
Cow position: chr10:44294754-44295195 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 297
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 39, 22

Conread position: 1-442
Cow position: chr10:37769732-37770187 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 222

Conread position: 1-444
Cow position: chr10:3543665-3543228 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 302
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 48

Conread position: 1-452
Cow position: chr10:21076271-21076724 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 298
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 89

Conread position: 1-466
Cow position: chr10:38546313-38545836 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 273

Conread position: 1-466
Cow position: chr10:57575517-57576003 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 310
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 109

Conread position: 1-468
Cow position: chr10:14859887-14860356 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 141

Conread position: 1-468
Cow position: chr10:24298942-24298467 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 71

Conread position: 1-468
Cow position: chr10:31523741-31524189 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 1-468
Cow position: chr10:42628570-42629014 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 98

Conread position: 1-468
Cow position: chr10:46191277-46191744 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 2-227
Cow position: chr10:60489572-60489803 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 13

Conread position: 2-252
Cow position: chr10:4499601-4499855 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 30

Conread position: 2-405
Cow position: chr10:39817440-39817036 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 177

Conread position: 2-416
Cow position: chr10:38345453-38345024 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 2-429
Cow position: chr10:15862224-15861787 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 144

Conread position: 2-435
Cow position: chr10:38847279-38847699 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 106

Conread position: 3-437
Cow position: chr10:58377679-58377246 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 293
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 270

Conread position: 6-416
Cow position: chr10:62216521-62216945 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 6-444
Cow position: chr10:39041391-39040931 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 137

Conread position: 7-405
Cow position: chr10:39179699-39180110 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 9-416
Cow position: chr10:29696154-29696569 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 108

Conread position: 28-416
Cow position: chr10:2123326-2122924 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 31-405
Cow position: chr10:19496347-19495959 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 160

Conread position: 40-444
Cow position: chr10:14951842-14952236 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 271
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 14, 53

Conread position: 41-403
Cow position: chr10:40152505-40152129 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 196

Conread position: 43-412
Cow position: chr10:34318338-34317961 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 249

Conread position: 52-435
Cow position: chr10:40751615-40752000 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 31, 164

Conread position: 56-398
Cow position: chr10:41389574-41389225 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 42

Conread position: 66-281
Cow position: chr10:54979903-54979680 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 21, 39

Conread position: 72-468
Cow position: chr10:49310489-49310878 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 65

Conread position: 89-335
Cow position: chr10:55093244-55093496 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 76, 206

Conread position: 90-278
Cow position: chr10:39445138-39444940 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 92-416
Cow position: chr10:16475765-16476095 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 157

Conread position: 112-405
Cow position: chr10:10581817-10582130 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 114-445
Cow position: chr10:38526932-38527270 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 216
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 125

Conread position: 118-412
Cow position: chr10:20371939-20371644 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 132

Conread position: 122-405
Cow position: chr10:19758386-19758675 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 141

Conread position: 127-317
Cow position: chr10:28931985-28931787 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 141

Conread position: 127-401
Cow position: chr10:23431852-23432134 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 259

Conread position: 132-468
Cow position: chr10:33346646-33346990 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 320

Conread position: 189-450
Cow position: chr10:1367204-1367460 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 239, 58

Conread position: 191-468
Cow position: chr10:8328160-8327879 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 127

Conread position: 193-438
Cow position: chr10:31537381-31537623 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 125, 0

Conread position: 201-405
Cow position: chr10:19802679-19802880 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 71, 53

Conread position: 203-405
Cow position: chr10:47157073-47157275 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 53, 60

Conread position: 203-431
Cow position: chr10:60192256-60192485 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 143, 169

Conread position: 248-416
Cow position: chr10:29846481-29846314 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 140, 0

Conread position: 259-415
Cow position: chr10:19497135-19496977 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 141, 0

Conread position: 269-468
Cow position: chr10:54979280-54979081 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 148, 123

Conread position: 283-405
Cow position: chr10:56064878-56065000 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 298-410
Cow position: chr10:68599073-68598961 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 310-416
Cow position: chr10:24061574-24061468 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.