Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-161 |
| Cow position: | chr13:30237789-30237945 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 1-219 |
| Cow position: | chr13:2232273-2232505 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-254 |
| Cow position: | chr13:30302680-30302944 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-309 |
| Cow position: | chr13:5718599-5718903 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 1-322 |
| Cow position: | chr13:33336709-33336394 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 1-328 |
| Cow position: | chr13:30245120-30244778 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-370 |
| Cow position: | chr13:21130942-21131317 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 1-384 |
| Cow position: | chr13:19438556-19438943 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 1-391 |
| Cow position: | chr13:6668510-6668106 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 212 |
| Conread position: | 1-395 |
| Cow position: | chr13:2908835-2908428 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 274 |
| Conread position: | 1-401 |
| Cow position: | chr13:3654697-3654299 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 1-403 |
| Cow position: | chr13:34187074-34186658 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 343 |
| Conread position: | 1-405 |
| Cow position: | chr13:1593540-1593124 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 325 |
| Conread position: | 1-405 |
| Cow position: | chr13:2297185-2296780 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 284 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 53, 290 |
| Conread position: | 1-405 |
| Cow position: | chr13:3276771-3277185 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr13:17308088-17308506 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr13:21840581-21840163 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr13:31734467-31734054 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 1-405 |
| Cow position: | chr13:32738207-32737791 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 216 |
| Conread position: | 1-405 |
| Cow position: | chr13:32986436-32986026 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 155 |
| Conread position: | 1-405 |
| Cow position: | chr13:34868382-34868773 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 1-405 |
| Cow position: | chr13:49973296-49973715 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr13:50109077-50109493 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr13:62327968-62327553 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 273 |
| Conread position: | 1-413 |
| Cow position: | chr13:31832215-31832636 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 406 |
| Conread position: | 1-414 |
| Cow position: | chr13:22186109-22185699 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 53 |
| Conread position: | 1-415 |
| Cow position: | chr13:4872690-4873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 343 |
| Conread position: | 1-416 |
| Cow position: | chr13:15924769-15924342 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-416 |
| Cow position: | chr13:30657351-30656935 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 1-416 |
| Cow position: | chr13:31612722-31612294 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 328 |
| Conread position: | 1-416 |
| Cow position: | chr13:33927949-33927545 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 1-416 |
| Cow position: | chr13:34042751-34042327 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 1-416 |
| Cow position: | chr13:34692776-34693207 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-416 |
| Cow position: | chr13:35756854-35757283 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-416 |
| Cow position: | chr13:56730668-56730245 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 253 |
| Conread position: | 1-417 |
| Cow position: | chr13:34143045-34142615 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 1-436 |
| Cow position: | chr13:34326064-34325611 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 274 |
| Conread position: | 1-465 |
| Cow position: | chr13:34936756-34937239 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 118 |
| Conread position: | 1-468 |
| Cow position: | chr13:54284196-54284660 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 2-362 |
| Cow position: | chr13:23003902-23003530 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 242 |
| Conread position: | 2-404 |
| Cow position: | chr13:34911754-34911349 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 52 |
| Conread position: | 2-405 |
| Cow position: | chr13:9044124-9044531 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 116 |
| Conread position: | 2-416 |
| Cow position: | chr13:4940700-4941130 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 2-468 |
| Cow position: | chr13:20542751-20542281 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 136 |
| Conread position: | 3-162 |
| Cow position: | chr13:32544556-32544720 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 3-405 |
| Cow position: | chr13:13324366-13324780 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-417 |
| Cow position: | chr13:15520899-15520472 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 9-224 |
| Cow position: | chr13:15451863-15451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 12-416 |
| Cow position: | chr13:33825105-33824693 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 18-405 |
| Cow position: | chr13:35030178-35030582 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 283 |
| Conread position: | 25-421 |
| Cow position: | chr13:34767638-34767248 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 28-405 |
| Cow position: | chr13:3567425-3567825 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 41-252 |
| Cow position: | chr13:48356958-48357183 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 49-405 |
| Cow position: | chr13:2389158-2388787 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 57-468 |
| Cow position: | chr13:30140669-30141099 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 58-451 |
| Cow position: | chr13:11764560-11764184 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 115 |
| Conread position: | 69-422 |
| Cow position: | chr13:31560876-31561235 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 185 |
| Conread position: | 88-400 |
| Cow position: | chr13:19220117-19219798 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 110 |
| Conread position: | 90-330 |
| Cow position: | chr13:34387729-34387476 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 188 |
| Conread position: | 92-278 |
| Cow position: | chr13:10114944-10114749 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 153 |
| Conread position: | 92-387 |
| Cow position: | chr13:47230277-47229974 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 98-340 |
| Cow position: | chr13:41312049-41311795 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 159 |
| Conread position: | 105-405 |
| Cow position: | chr13:4483525-4483825 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 118-351 |
| Cow position: | chr13:27748479-27748235 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 123-431 |
| Cow position: | chr13:46732481-46732172 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 104 |
| Conread position: | 157-405 |
| Cow position: | chr13:4178873-4178620 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 193-415 |
| Cow position: | chr13:16343392-16343177 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 178, 57 |
| Conread position: | 194-396 |
| Cow position: | chr13:3338607-3338810 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 197-332 |
| Cow position: | chr13:30237941-30238076 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 202-405 |
| Cow position: | chr13:60466165-60466368 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-405 |
| Cow position: | chr13:3058281-3058079 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 232-405 |
| Cow position: | chr13:32544917-32545090 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-405 |
| Cow position: | chr13:676751-676907 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 282-436 |
| Cow position: | chr13:15451648-15451498 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
Show alignments to all cow chromosomes.