Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-191
Cow position: chr14:13622121-13621922 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 22

Conread position: 1-260
Cow position: chr14:11468089-11468348 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 97, 32

Conread position: 1-336
Cow position: chr14:41755352-41755682 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 243
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 49, 16

Conread position: 1-370
Cow position: chr14:48824107-48824455 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 255
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 53, 0

Conread position: 1-398
Cow position: chr14:23260440-23260028 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 278
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 48, 279

Conread position: 1-401
Cow position: chr14:13272748-13273150 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 128

Conread position: 1-403
Cow position: chr14:45833650-45834059 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 127

Conread position: 1-403
Cow position: chr14:46464560-46464977 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 357

Conread position: 1-405
Cow position: chr14:750059-750477 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr14:2283829-2284246 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr14:5528551-5528969 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-405
Cow position: chr14:17491967-17491549 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr14:19328779-19328361 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-405
Cow position: chr14:23256849-23257266 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 138

Conread position: 1-405
Cow position: chr14:23901311-23900893 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr14:29048411-29047996 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 39

Conread position: 1-405
Cow position: chr14:33394286-33393869 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr14:41085293-41084874 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 278

Conread position: 1-405
Cow position: chr14:44376925-44377344 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 139

Conread position: 1-405
Cow position: chr14:45029623-45029217 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 23

Conread position: 1-405
Cow position: chr14:45672555-45672138 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 308

Conread position: 1-408
Cow position: chr14:44422047-44422464 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 1-410
Cow position: chr14:30585449-30585042 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 42

Conread position: 1-412
Cow position: chr14:22032192-22031773 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 1-413
Cow position: chr14:45850715-45851137 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 219

Conread position: 1-414
Cow position: chr14:38816709-38816294 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 277
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 53, 138

Conread position: 1-415
Cow position: chr14:16920195-16919773 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 1-415
Cow position: chr14:17001565-17001142 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 323

Conread position: 1-416
Cow position: chr14:7831048-7830622 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 190

Conread position: 1-416
Cow position: chr14:11154663-11154248 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 1-416
Cow position: chr14:13302520-13302946 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 111

Conread position: 1-416
Cow position: chr14:13660497-13660068 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 38

Conread position: 1-416
Cow position: chr14:13778456-13778873 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 198

Conread position: 1-416
Cow position: chr14:15277088-15276662 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr14:16273806-16273378 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 357

Conread position: 1-416
Cow position: chr14:17684885-17685314 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 412

Conread position: 1-416
Cow position: chr14:20781946-20782374 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 271

Conread position: 1-416
Cow position: chr14:23690734-23690311 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 28

Conread position: 1-416
Cow position: chr14:28994365-28993936 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr14:30596891-30596466 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 126

Conread position: 1-416
Cow position: chr14:36967746-36968173 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr14:37223392-37223819 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 349

Conread position: 1-416
Cow position: chr14:44225899-44226315 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 113

Conread position: 1-416
Cow position: chr14:44685538-44685961 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr14:45205560-45205995 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 233

Conread position: 1-416
Cow position: chr14:45712485-45712073 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 99

Conread position: 1-416
Cow position: chr14:45767496-45767920 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 169

Conread position: 1-416
Cow position: chr14:47624059-47624471 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 101

Conread position: 1-416
Cow position: chr14:48254821-48254387 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 135

Conread position: 1-416
Cow position: chr14:50110071-50110484 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 34

Conread position: 1-417
Cow position: chr14:44855935-44855508 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 279

Conread position: 1-417
Cow position: chr14:50134562-50134994 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 35

Conread position: 1-420
Cow position: chr14:27992814-27992393 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 285
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 53, 35

Conread position: 1-430
Cow position: chr14:35928667-35929106 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 148

Conread position: 1-435
Cow position: chr14:43552912-43553359 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 297
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 114

Conread position: 1-435
Cow position: chr14:47589365-47589805 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 293
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 50, 35

Conread position: 1-444
Cow position: chr14:42151814-42152264 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 274

Conread position: 1-444
Cow position: chr14:44130410-44130855 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 271

Conread position: 1-458
Cow position: chr14:45303872-45303402 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 110

Conread position: 1-467
Cow position: chr14:12608698-12609151 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 316
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 140

Conread position: 1-468
Cow position: chr14:13326636-13326175 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 308
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 139

Conread position: 1-468
Cow position: chr14:35387640-35387178 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 109

Conread position: 1-468
Cow position: chr14:40339197-40339654 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 42

Conread position: 2-189
Cow position: chr14:44580411-44580606 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 2-405
Cow position: chr14:9045056-9045473 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 2-416
Cow position: chr14:7471866-7472286 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 2-444
Cow position: chr14:40170191-40169760 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 51

Conread position: 2-466
Cow position: chr14:22018894-22019359 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 32

Conread position: 3-304
Cow position: chr14:21743096-21743409 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 51, 81

Conread position: 3-390
Cow position: chr14:46084117-46084508 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 12

Conread position: 3-425
Cow position: chr14:47640639-47641064 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 272
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 98, 51

Conread position: 6-401
Cow position: chr14:38532800-38532389 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 7-239
Cow position: chr14:31607424-31607187 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 160, 45

Conread position: 9-431
Cow position: chr14:14309573-14309139 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 10-389
Cow position: chr14:31887177-31887561 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 271
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 240

Conread position: 12-416
Cow position: chr14:13864581-13864164 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 16

Conread position: 21-446
Cow position: chr14:30707158-30706741 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 276
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 33, 175

Conread position: 35-438
Cow position: chr14:16845968-16846377 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 260
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 101

Conread position: 36-416
Cow position: chr14:5201532-5201163 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 133

Conread position: 42-466
Cow position: chr14:41407352-41407786 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 230

Conread position: 43-416
Cow position: chr14:43034352-43033976 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 160

Conread position: 57-414
Cow position: chr14:37414340-37413972 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 270

Conread position: 57-450
Cow position: chr14:45916965-45917370 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 403

Conread position: 61-396
Cow position: chr14:13480175-13479836 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 72

Conread position: 66-291
Cow position: chr14:45080078-45080313 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 33, 192

Conread position: 86-405
Cow position: chr14:22242460-22242788 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 85

Conread position: 90-389
Cow position: chr14:5511403-5511713 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 151

Conread position: 92-416
Cow position: chr14:19619811-19620138 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 32

Conread position: 115-416
Cow position: chr14:44287642-44287332 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 118-401
Cow position: chr14:42123584-42123296 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 75, 61

Conread position: 118-435
Cow position: chr14:34775142-34775468 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 45, 203

Conread position: 119-405
Cow position: chr14:44551497-44551789 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 28

Conread position: 124-429
Cow position: chr14:48406071-48405757 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 34, 182

Conread position: 162-450
Cow position: chr14:38146243-38146528 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 31, 105

Conread position: 180-416
Cow position: chr14:45771097-45770861 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 85

Conread position: 193-405
Cow position: chr14:45160793-45161004 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 46, 0

Conread position: 193-450
Cow position: chr14:44580651-44580898 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 73, 53

Conread position: 203-468
Cow position: chr14:33675517-33675784 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 63, 5

Conread position: 205-405
Cow position: chr14:13621442-13621240 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 229-416
Cow position: chr14:12743337-12743150 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 233-416
Cow position: chr14:45565064-45565246 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 86, 11

Conread position: 285-405
Cow position: chr14:43557223-43557343 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.