Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-206
Cow position: chr16:52815489-52815275 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 1-208
Cow position: chr16:25152918-25153127 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 103

Conread position: 1-220
Cow position: chr16:29676161-29675934 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 90

Conread position: 1-235
Cow position: chr16:18687975-18687734 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 41

Conread position: 1-240
Cow position: chr16:1430372-1430619 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 53, 34

Conread position: 1-248
Cow position: chr16:32605972-32606233 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-277
Cow position: chr16:16276360-16276074 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 211

Conread position: 1-280
Cow position: chr16:5888627-5888902 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 46, 143

Conread position: 1-290
Cow position: chr16:4303326-4303031 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 100

Conread position: 1-312
Cow position: chr16:40887110-40886792 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 97, 52

Conread position: 1-348
Cow position: chr16:36232461-36232111 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 82

Conread position: 1-351
Cow position: chr16:5651896-5652243 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 69

Conread position: 1-374
Cow position: chr16:42051227-42050857 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 22

Conread position: 1-389
Cow position: chr16:10437399-10437788 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 27

Conread position: 1-392
Cow position: chr16:27734660-27734253 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 328

Conread position: 1-398
Cow position: chr16:5918629-5919037 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-401
Cow position: chr16:36362205-36361805 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 66

Conread position: 1-402
Cow position: chr16:15491852-15492267 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 138

Conread position: 1-402
Cow position: chr16:23982456-23982868 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 92

Conread position: 1-405
Cow position: chr16:2239589-2239179 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 69

Conread position: 1-405
Cow position: chr16:5661005-5661411 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 131

Conread position: 1-405
Cow position: chr16:25187786-25188203 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 296

Conread position: 1-405
Cow position: chr16:25341113-25341526 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 39

Conread position: 1-405
Cow position: chr16:28171214-28170802 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 1-405
Cow position: chr16:36282545-36282958 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 42

Conread position: 1-405
Cow position: chr16:43898124-43897710 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 271

Conread position: 1-408
Cow position: chr16:31892-32302 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-410
Cow position: chr16:56551273-56551686 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 63

Conread position: 1-413
Cow position: chr16:51685578-51686004 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 280
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 361

Conread position: 1-414
Cow position: chr16:6942767-6943202 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr16:407888-407459 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 74

Conread position: 1-416
Cow position: chr16:1568309-1567882 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr16:2483995-2483570 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 116

Conread position: 1-416
Cow position: chr16:2728170-2727716 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 151

Conread position: 1-416
Cow position: chr16:5483466-5483895 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr16:6549377-6548952 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 135

Conread position: 1-416
Cow position: chr16:7905787-7906191 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 131

Conread position: 1-416
Cow position: chr16:8816961-8816532 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 1-416
Cow position: chr16:10808307-10808722 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 41

Conread position: 1-416
Cow position: chr16:12538780-12538353 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 234

Conread position: 1-416
Cow position: chr16:14666686-14666257 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr16:15565895-15566319 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 1-416
Cow position: chr16:25084767-25085193 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 136

Conread position: 1-416
Cow position: chr16:25440763-25441196 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr16:25458326-25457893 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr16:26662892-26663321 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 189

Conread position: 1-416
Cow position: chr16:34529470-34529893 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-416
Cow position: chr16:39820779-39821202 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-417
Cow position: chr16:31592761-31592334 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 359

Conread position: 1-435
Cow position: chr16:335443-335877 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 30

Conread position: 1-438
Cow position: chr16:47562830-47563287 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 310
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 52, 114

Conread position: 1-444
Cow position: chr16:2411825-2411375 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 416

Conread position: 1-465
Cow position: chr16:49257434-49256960 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 30

Conread position: 1-468
Cow position: chr16:9929690-9930165 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 126

Conread position: 1-468
Cow position: chr16:25157074-25156594 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 290

Conread position: 1-468
Cow position: chr16:31376111-31375656 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 2-339
Cow position: chr16:11111792-11111447 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 235
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 52, 148

Conread position: 2-405
Cow position: chr16:15183947-15184364 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 242

Conread position: 2-405
Cow position: chr16:28471951-28471541 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 183

Conread position: 2-415
Cow position: chr16:28438639-28438215 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 266
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 52, 138

Conread position: 2-416
Cow position: chr16:20255165-20254739 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 136

Conread position: 2-416
Cow position: chr16:29046166-29046594 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 2-416
Cow position: chr16:40297031-40296606 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 135

Conread position: 2-435
Cow position: chr16:23253359-23252914 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 148

Conread position: 2-438
Cow position: chr16:836173-836624 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 126

Conread position: 2-438
Cow position: chr16:41559817-41560246 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 299
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 165, 27

Conread position: 3-404
Cow position: chr16:11052313-11052720 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 52

Conread position: 3-416
Cow position: chr16:10204268-10203858 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 18-446
Cow position: chr16:42740258-42739822 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 99

Conread position: 35-444
Cow position: chr16:16029965-16030386 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 282
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 104

Conread position: 40-219
Cow position: chr16:29032342-29032534 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 46-468
Cow position: chr16:32935352-32935795 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 9

Conread position: 61-416
Cow position: chr16:19713675-19713317 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 15

Conread position: 61-435
Cow position: chr16:10566073-10565691 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 17

Conread position: 71-436
Cow position: chr16:23670392-23670041 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 239
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 39, 52

Conread position: 88-435
Cow position: chr16:33611846-33611484 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 176

Conread position: 90-425
Cow position: chr16:29982684-29983017 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 59

Conread position: 100-396
Cow position: chr16:9777333-9777637 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 7

Conread position: 125-412
Cow position: chr16:44966444-44966734 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 32, 108

Conread position: 154-405
Cow position: chr16:53045658-53045915 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 154-468
Cow position: chr16:49235841-49235524 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 230
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 27

Conread position: 167-413
Cow position: chr16:41758129-41757879 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 96

Conread position: 193-430
Cow position: chr16:48681726-48681493 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 72, 58

Conread position: 193-466
Cow position: chr16:18499998-18499729 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 229, 16

Conread position: 201-450
Cow position: chr16:30047850-30048101 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 177, 38

Conread position: 207-468
Cow position: chr16:52815124-52814865 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 57, 51

Conread position: 224-466
Cow position: chr16:29033097-29033340 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 95, 39

Conread position: 229-405
Cow position: chr16:31832016-31832193 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 75, 0

Conread position: 283-413
Cow position: chr16:29675939-29675810 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 9

Conread position: 285-468
Cow position: chr16:16273393-16273209 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 29

Conread position: 288-418
Cow position: chr16:25153167-25153297 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 295-468
Cow position: chr16:25257055-25257228 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 127, 149

Show alignments to all cow chromosomes.