Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-162 |
| Cow position: | chr17:28109807-28109971 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-245 |
| Cow position: | chr17:15322543-15322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 1-291 |
| Cow position: | chr17:22160637-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-328 |
| Cow position: | chr17:24780769-24781111 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-375 |
| Cow position: | chr17:4286812-4287187 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 1-383 |
| Cow position: | chr17:16859835-16859451 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 292 |
| Conread position: | 1-396 |
| Cow position: | chr17:13857048-13856639 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-400 |
| Cow position: | chr17:2588052-2588437 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 100, 26 |
| Conread position: | 1-401 |
| Cow position: | chr17:43988256-43988668 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 254 |
| Conread position: | 1-402 |
| Cow position: | chr17:2173600-2174014 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 144 |
| Conread position: | 1-403 |
| Cow position: | chr17:1879813-1880231 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 247 |
| Conread position: | 1-405 |
| Cow position: | chr17:228580-228169 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 137 |
| Conread position: | 1-405 |
| Cow position: | chr17:2248860-2248445 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 1-405 |
| Cow position: | chr17:6089440-6089022 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr17:8208828-8209245 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 1-405 |
| Cow position: | chr17:16889846-16890262 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 1-405 |
| Cow position: | chr17:20088009-20087608 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 1-405 |
| Cow position: | chr17:20666005-20665587 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr17:24633675-24634093 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr17:25737384-25737802 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-405 |
| Cow position: | chr17:44853213-44852794 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 329 |
| Conread position: | 1-410 |
| Cow position: | chr17:9653735-9653314 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 414 |
| Conread position: | 1-410 |
| Cow position: | chr17:15435512-15435935 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-414 |
| Cow position: | chr17:15143648-15143219 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-414 |
| Cow position: | chr17:15157240-15156816 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 277 |
| Conread position: | 1-415 |
| Cow position: | chr17:1383093-1382665 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-415 |
| Cow position: | chr17:4081370-4081776 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 1-416 |
| Cow position: | chr17:1946699-1947119 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 137 |
| Conread position: | 1-416 |
| Cow position: | chr17:3643115-3642686 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr17:4059828-4060249 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 1-416 |
| Cow position: | chr17:6259566-6259994 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 323 |
| Conread position: | 1-416 |
| Cow position: | chr17:11088003-11087574 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr17:13929389-13929818 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-416 |
| Cow position: | chr17:14893882-14894303 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 235 |
| Conread position: | 1-416 |
| Cow position: | chr17:15850119-15850547 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 137 |
| Conread position: | 1-416 |
| Cow position: | chr17:18103959-18103535 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 352 |
| Conread position: | 1-416 |
| Cow position: | chr17:18185803-18185385 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 1-416 |
| Cow position: | chr17:19269645-19269216 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr17:20183506-20183084 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 233 |
| Conread position: | 1-416 |
| Cow position: | chr17:22131955-22132378 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 227 |
| Conread position: | 1-416 |
| Cow position: | chr17:22429761-22429338 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 1-416 |
| Cow position: | chr17:23857313-23856884 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-416 |
| Cow position: | chr17:27345526-27345948 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 219 |
| Conread position: | 1-416 |
| Cow position: | chr17:35591936-35592364 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 1-417 |
| Cow position: | chr17:2287110-2287537 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 1-417 |
| Cow position: | chr17:14217303-14216871 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-418 |
| Cow position: | chr17:6002290-6001866 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 40, 103 |
| Conread position: | 1-429 |
| Cow position: | chr17:152749-152313 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 1-432 |
| Cow position: | chr17:15370798-15371214 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 1-435 |
| Cow position: | chr17:1658848-1658396 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 1-451 |
| Cow position: | chr17:42264240-42264686 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 55 |
| Conread position: | 1-465 |
| Cow position: | chr17:4295088-4295543 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 1-468 |
| Cow position: | chr17:14325773-14325310 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 132 |
| Conread position: | 2-162 |
| Cow position: | chr17:2579280-2579444 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 53, 147 |
| Conread position: | 2-405 |
| Cow position: | chr17:2261832-2262241 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 2-417 |
| Cow position: | chr17:20401405-20401812 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 2-452 |
| Cow position: | chr17:2146924-2147360 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 3-306 |
| Cow position: | chr17:14308579-14308273 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 10-416 |
| Cow position: | chr17:18027027-18026607 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 18-386 |
| Cow position: | chr17:2555861-2556242 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 268 |
| Conread position: | 36-405 |
| Cow position: | chr17:23324698-23324315 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 51-191 |
| Cow position: | chr17:1284007-1283868 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 53-297 |
| Cow position: | chr17:12670671-12670423 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 113 |
| Conread position: | 66-312 |
| Cow position: | chr17:18849487-18849744 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 203 |
| Conread position: | 68-383 |
| Cow position: | chr17:40834546-40834858 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 90-438 |
| Cow position: | chr17:16418021-16417666 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 226 |
| Conread position: | 100-405 |
| Cow position: | chr17:2579457-2579754 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 93, 63 |
| Conread position: | 121-343 |
| Cow position: | chr17:39933504-39933733 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 41, 169 |
| Conread position: | 130-450 |
| Cow position: | chr17:31199788-31199478 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 246 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 154-405 |
| Cow position: | chr17:40804699-40804956 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 179-415 |
| Cow position: | chr17:3709289-3709062 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 193-405 |
| Cow position: | chr17:602497-602299 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 194-362 |
| Cow position: | chr17:26205879-26205711 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 194-374 |
| Cow position: | chr17:249864-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 194-405 |
| Cow position: | chr17:181291-181502 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 208-416 |
| Cow position: | chr17:1283763-1283555 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-405 |
| Cow position: | chr17:43952596-43952424 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 235-416 |
| Cow position: | chr17:15323215-15323395 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 236-405 |
| Cow position: | chr17:31768069-31767900 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-405 |
| Cow position: | chr17:34156102-34156267 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 244-415 |
| Cow position: | chr17:22557600-22557771 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 71 |
Show alignments to all cow chromosomes.