Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-174
Cow position: chr18:27986957-27987138 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 19

Conread position: 1-216
Cow position: chr18:44621688-44621917 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 53, 83

Conread position: 1-221
Cow position: chr18:17992633-17992402 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 53, 80

Conread position: 1-286
Cow position: chr18:16660075-16659791 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 226
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 35

Conread position: 1-310
Cow position: chr18:18897432-18897746 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 212
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 22

Conread position: 1-392
Cow position: chr18:16393712-16393312 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 262
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 53, 109

Conread position: 1-396
Cow position: chr18:44601467-44601856 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 254
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 52, 96

Conread position: 1-402
Cow position: chr18:51341615-51342030 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr18:16533908-16534325 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 116

Conread position: 1-405
Cow position: chr18:22602416-22602834 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr18:23944442-23944028 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr18:28973974-28973556 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-405
Cow position: chr18:33358796-33359212 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 230

Conread position: 1-405
Cow position: chr18:33953638-33953228 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 30

Conread position: 1-405
Cow position: chr18:43146995-43146579 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr18:47741947-47742365 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr18:51480766-51481186 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 1-405
Cow position: chr18:51689555-51689971 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 140

Conread position: 1-408
Cow position: chr18:2019757-2019337 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 395

Conread position: 1-414
Cow position: chr18:5980371-5980785 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 274
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 98

Conread position: 1-416
Cow position: chr18:6869329-6868901 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 138

Conread position: 1-416
Cow position: chr18:14415905-14416333 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 355

Conread position: 1-416
Cow position: chr18:16176678-16176260 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 40

Conread position: 1-416
Cow position: chr18:23797578-23798005 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr18:32293704-32294116 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 1-416
Cow position: chr18:33268770-33269183 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 90

Conread position: 1-416
Cow position: chr18:36508262-36508690 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 189

Conread position: 1-416
Cow position: chr18:37504992-37505421 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 351

Conread position: 1-416
Cow position: chr18:39748507-39748935 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 327

Conread position: 1-416
Cow position: chr18:41840896-41840467 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr18:48221806-48222236 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 275

Conread position: 1-416
Cow position: chr18:51257912-51258341 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 26

Conread position: 1-416
Cow position: chr18:53785768-53786195 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 114

Conread position: 1-417
Cow position: chr18:16078628-16079078 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-417
Cow position: chr18:19352315-19352745 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-417
Cow position: chr18:51310511-51310942 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 136

Conread position: 1-429
Cow position: chr18:2887092-2886650 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 296

Conread position: 1-435
Cow position: chr18:40478312-40478761 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 130

Conread position: 1-468
Cow position: chr18:29236746-29237220 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 27

Conread position: 1-468
Cow position: chr18:37599598-37599131 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 133

Conread position: 1-468
Cow position: chr18:54171914-54171452 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 136

Conread position: 2-308
Cow position: chr18:43200992-43201304 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 27

Conread position: 2-342
Cow position: chr18:54024420-54024076 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 44

Conread position: 2-402
Cow position: chr18:35335419-35335823 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 88

Conread position: 2-403
Cow position: chr18:33335798-33336207 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 279

Conread position: 2-405
Cow position: chr18:27838373-27837970 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 58

Conread position: 2-416
Cow position: chr18:54044771-54044365 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 261

Conread position: 2-434
Cow position: chr18:16877411-16877843 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 295
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 224

Conread position: 3-405
Cow position: chr18:55088994-55088578 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 3-417
Cow position: chr18:1521062-1521504 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 112

Conread position: 3-452
Cow position: chr18:46878057-46877614 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 304
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 15, 79

Conread position: 6-405
Cow position: chr18:11275172-11274759 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 12-396
Cow position: chr18:14130329-14130722 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 114

Conread position: 31-416
Cow position: chr18:47719624-47719226 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 35

Conread position: 31-416
Cow position: chr18:52650890-52651277 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 71

Conread position: 53-380
Cow position: chr18:114378-114711 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 218

Conread position: 57-398
Cow position: chr18:19407364-19407033 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 223
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 68

Conread position: 78-323
Cow position: chr18:25350673-25350929 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 22, 248

Conread position: 81-381
Cow position: chr18:45958741-45959039 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 132
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 181, 0

Conread position: 81-405
Cow position: chr18:24040721-24040385 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 81-405
Cow position: chr18:51463062-51462732 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 236

Conread position: 87-416
Cow position: chr18:19539560-19539227 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 270

Conread position: 98-338
Cow position: chr18:32652251-32652499 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 187
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 110-442
Cow position: chr18:36211070-36210735 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 220
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 85, 24

Conread position: 112-398
Cow position: chr18:29048526-29048226 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 81

Conread position: 135-468
Cow position: chr18:16843268-16842929 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 214

Conread position: 161-348
Cow position: chr18:18089375-18089183 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 162-402
Cow position: chr18:54003616-54003864 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 33, 172

Conread position: 194-405
Cow position: chr18:27987196-27987410 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 169, 196

Conread position: 206-416
Cow position: chr18:17992273-17992063 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 49, 57

Conread position: 227-468
Cow position: chr18:29763539-29763775 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 199, 87

Conread position: 250-467
Cow position: chr18:56462711-56462498 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 76, 64

Conread position: 260-444
Cow position: chr18:51629648-51629822 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 20

Show alignments to all cow chromosomes.