Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-134 |
| Cow position: | chr19:4252425-4252288 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 1-191 |
| Cow position: | chr19:27052832-27052637 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 1-191 |
| Cow position: | chr19:32193510-32193711 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-216 |
| Cow position: | chr19:29209494-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 1-261 |
| Cow position: | chr19:20125554-20125809 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 1-275 |
| Cow position: | chr19:55078679-55078967 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-279 |
| Cow position: | chr19:34353-34641 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 254 |
| Conread position: | 1-291 |
| Cow position: | chr19:30372215-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 168 |
| Conread position: | 1-302 |
| Cow position: | chr19:359571-359260 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 54, 223 |
| Conread position: | 1-318 |
| Cow position: | chr19:31341639-31341986 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 292 |
| Conread position: | 1-339 |
| Cow position: | chr19:261369-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 115 |
| Conread position: | 1-355 |
| Cow position: | chr19:4532815-4532483 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 1-369 |
| Cow position: | chr19:350350-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 193 |
| Conread position: | 1-372 |
| Cow position: | chr19:32244617-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-396 |
| Cow position: | chr19:7488246-7488655 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 331 |
| Conread position: | 1-396 |
| Cow position: | chr19:28581721-28581317 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 219 |
| Conread position: | 1-396 |
| Cow position: | chr19:32665463-32665867 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 292 |
| Conread position: | 1-401 |
| Cow position: | chr19:439710-439310 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 111 |
| Conread position: | 1-402 |
| Cow position: | chr19:10672373-10671958 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-402 |
| Cow position: | chr19:28593210-28593611 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 257 |
| Conread position: | 1-405 |
| Cow position: | chr19:37829-38246 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 236 |
| Conread position: | 1-405 |
| Cow position: | chr19:76308-75918 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 1-405 |
| Cow position: | chr19:170807-170396 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 245 |
| Conread position: | 1-405 |
| Cow position: | chr19:416586-417011 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 1-405 |
| Cow position: | chr19:7342001-7342419 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr19:32212137-32211722 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 187 |
| Conread position: | 1-405 |
| Cow position: | chr19:40852497-40852087 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 1-405 |
| Cow position: | chr19:43143649-43144067 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 327 |
| Conread position: | 1-408 |
| Cow position: | chr19:172144-172565 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-416 |
| Cow position: | chr19:4385418-4385831 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 1-416 |
| Cow position: | chr19:28376464-28376848 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 49 |
| Conread position: | 1-416 |
| Cow position: | chr19:33873360-33873788 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 138 |
| Conread position: | 1-416 |
| Cow position: | chr19:33941545-33941972 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 300 |
| Conread position: | 1-416 |
| Cow position: | chr19:39546557-39546973 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 279 |
| Conread position: | 1-417 |
| Cow position: | chr19:772532-772964 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-435 |
| Cow position: | chr19:893680-893236 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 222 |
| Conread position: | 1-435 |
| Cow position: | chr19:32223506-32223067 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 138 |
| Conread position: | 1-437 |
| Cow position: | chr19:30755111-30755555 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 307 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 53, 239 |
| Conread position: | 1-444 |
| Cow position: | chr19:203896-204351 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 444 |
| Conread position: | 1-464 |
| Cow position: | chr19:6553546-6554006 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 2-276 |
| Cow position: | chr19:543692-543404 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-416 |
| Cow position: | chr19:39390450-39390870 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 2-464 |
| Cow position: | chr19:377941-377502 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 192, 51 |
| Conread position: | 3-317 |
| Cow position: | chr19:7068416-7068723 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 3-393 |
| Cow position: | chr19:40887711-40887316 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 3-447 |
| Cow position: | chr19:15953790-15954226 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 12-301 |
| Cow position: | chr19:32237736-32237440 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 278 |
| Conread position: | 17-312 |
| Cow position: | chr19:35979217-35979523 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 36-440 |
| Cow position: | chr19:15042132-15042546 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 37-374 |
| Cow position: | chr19:39688500-39688847 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 253 |
| Conread position: | 42-340 |
| Cow position: | chr19:42299525-42299210 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 49-431 |
| Cow position: | chr19:35376781-35377159 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 64-405 |
| Cow position: | chr19:687065-687414 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 244 |
| Conread position: | 82-401 |
| Cow position: | chr19:20104732-20105060 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 82-405 |
| Cow position: | chr19:52151814-52151479 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 92-299 |
| Cow position: | chr19:7405445-7405231 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 174 |
| Conread position: | 99-389 |
| Cow position: | chr19:2274338-2274043 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 104-405 |
| Cow position: | chr19:1032118-1032426 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 80 |
| Conread position: | 119-446 |
| Cow position: | chr19:1491673-1491351 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 123-423 |
| Cow position: | chr19:352933-352622 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 153 |
| Conread position: | 134-468 |
| Cow position: | chr19:42649030-42648701 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 34 |
| Conread position: | 163-468 |
| Cow position: | chr19:42248910-42249220 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 89 |
| Conread position: | 188-383 |
| Cow position: | chr19:17018598-17018781 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 217-416 |
| Cow position: | chr19:29209762-29209959 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 226-416 |
| Cow position: | chr19:5729000-5729191 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 228-405 |
| Cow position: | chr19:40817529-40817352 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 229-415 |
| Cow position: | chr19:439286-439103 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 248-416 |
| Cow position: | chr19:341416-341583 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 250-468 |
| Cow position: | chr19:42881-43101 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 283-468 |
| Cow position: | chr19:27052619-27052435 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 139, 90 |
| Conread position: | 293-405 |
| Cow position: | chr19:5208411-5208523 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.