Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-141
Cow position: chr20:19192238-19192093 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 1-239
Cow position: chr20:21393460-21393706 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 53, 27

Conread position: 1-332
Cow position: chr20:11679220-11678875 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 332

Conread position: 1-383
Cow position: chr20:28476208-28476579 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 249
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 58, 18

Conread position: 1-392
Cow position: chr20:13665311-13664921 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 269
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 54, 103

Conread position: 1-398
Cow position: chr20:15064659-15065066 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 122

Conread position: 1-401
Cow position: chr20:21914216-21914631 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 359

Conread position: 1-402
Cow position: chr20:7116579-7116164 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-402
Cow position: chr20:13762792-13763209 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-405
Cow position: chr20:822657-823075 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 1-405
Cow position: chr20:3270600-3271012 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 1-405
Cow position: chr20:8313546-8313132 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 190

Conread position: 1-405
Cow position: chr20:15097988-15097569 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-405
Cow position: chr20:19437848-19438248 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 83

Conread position: 1-405
Cow position: chr20:28565706-28565288 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-408
Cow position: chr20:23469769-23469355 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 291

Conread position: 1-415
Cow position: chr20:5560825-5560397 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr20:3252243-3251816 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 322

Conread position: 1-416
Cow position: chr20:5534829-5535256 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 244

Conread position: 1-416
Cow position: chr20:8004335-8003907 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 243

Conread position: 1-416
Cow position: chr20:12438871-12438442 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr20:15291908-15292329 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 42

Conread position: 1-416
Cow position: chr20:25851100-25850672 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 1-416
Cow position: chr20:27869087-27869516 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr20:28160672-28161089 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 1-416
Cow position: chr20:30684229-30684639 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 42

Conread position: 1-416
Cow position: chr20:35119464-35119888 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 1-417
Cow position: chr20:15947503-15947062 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 324

Conread position: 1-435
Cow position: chr20:22206438-22206875 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 133

Conread position: 1-450
Cow position: chr20:31378992-31378534 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 293
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 273

Conread position: 1-467
Cow position: chr20:9954093-9953617 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 269

Conread position: 2-191
Cow position: chr20:10102659-10102470 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 7, 141

Conread position: 2-467
Cow position: chr20:18315694-18315242 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 168

Conread position: 3-415
Cow position: chr20:25960995-25961421 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 3-416
Cow position: chr20:5484084-5484509 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 112

Conread position: 3-416
Cow position: chr20:23798774-23799204 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 379

Conread position: 12-447
Cow position: chr20:3032965-3033406 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 63

Conread position: 15-443
Cow position: chr20:13680153-13679704 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 103

Conread position: 20-433
Cow position: chr20:24614448-24614871 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 253

Conread position: 53-396
Cow position: chr20:29948444-29948798 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 69-417
Cow position: chr20:3684524-3684168 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 157

Conread position: 98-317
Cow position: chr20:5233158-5232934 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 127

Conread position: 109-418
Cow position: chr20:13434942-13434635 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 44

Conread position: 130-353
Cow position: chr20:10841223-10840991 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 156

Conread position: 164-352
Cow position: chr20:19367527-19367334 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 29, 130

Conread position: 164-416
Cow position: chr20:8993582-8993331 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 12, 150

Conread position: 176-418
Cow position: chr20:35104555-35104309 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 188-468
Cow position: chr20:10856941-10856662 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 60, 31

Conread position: 203-402
Cow position: chr20:10846011-10845817 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 12, 0

Conread position: 208-416
Cow position: chr20:21393705-21393912 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 30, 24

Conread position: 284-405
Cow position: chr20:19495170-19495291 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.