Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-153 |
| Cow position: | chr21:1191057-1191214 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-162 |
| Cow position: | chr21:27708771-27708938 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-214 |
| Cow position: | chr21:26819012-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-219 |
| Cow position: | chr21:3615301-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-235 |
| Cow position: | chr21:2716672-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-242 |
| Cow position: | chr21:33251401-33251656 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-254 |
| Cow position: | chr21:34259210-34258954 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 1-274 |
| Cow position: | chr21:2769452-2769165 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 1-312 |
| Cow position: | chr21:33755317-33755635 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-338 |
| Cow position: | chr21:4222678-4222333 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 271 |
| Conread position: | 1-356 |
| Cow position: | chr21:3426493-3426863 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 344 |
| Conread position: | 1-367 |
| Cow position: | chr21:993007-992640 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 1-375 |
| Cow position: | chr21:47948118-47948505 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 309 |
| Conread position: | 1-382 |
| Cow position: | chr21:216318-216693 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 1-389 |
| Cow position: | chr21:10850089-10850490 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 323 |
| Conread position: | 1-401 |
| Cow position: | chr21:4076854-4077260 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 1-401 |
| Cow position: | chr21:4589981-4589568 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 315 |
| Conread position: | 1-401 |
| Cow position: | chr21:12055991-12055578 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-401 |
| Cow position: | chr21:37044922-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-402 |
| Cow position: | chr21:2510661-2511075 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 1-402 |
| Cow position: | chr21:7267532-7267113 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 1-405 |
| Cow position: | chr21:2476501-2476114 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 1-405 |
| Cow position: | chr21:2788982-2788566 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 1-405 |
| Cow position: | chr21:4090660-4091076 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr21:6339575-6339993 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr21:11505596-11506023 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr21:26638454-26638038 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr21:39425072-39425490 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 273 |
| Conread position: | 1-405 |
| Cow position: | chr21:46915596-46916015 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-406 |
| Cow position: | chr21:20744742-20744341 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 28 |
| Conread position: | 1-410 |
| Cow position: | chr21:2674618-2674182 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 1-415 |
| Cow position: | chr21:11453647-11453219 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-416 |
| Cow position: | chr21:145928-146360 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 320 |
| Conread position: | 1-416 |
| Cow position: | chr21:1292168-1291753 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 1-416 |
| Cow position: | chr21:2883739-2883311 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 398 |
| Conread position: | 1-416 |
| Cow position: | chr21:3194405-3194815 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 99 |
| Conread position: | 1-416 |
| Cow position: | chr21:3778776-3779204 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 1-416 |
| Cow position: | chr21:4456836-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 1-416 |
| Cow position: | chr21:10566683-10567106 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 1-416 |
| Cow position: | chr21:13123990-13123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 91 |
| Conread position: | 1-416 |
| Cow position: | chr21:30561811-30562240 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr21:31559645-31559218 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 117 |
| Conread position: | 1-416 |
| Cow position: | chr21:35596377-35596804 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 323 |
| Conread position: | 1-416 |
| Cow position: | chr21:48116117-48116539 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 169 |
| Conread position: | 1-430 |
| Cow position: | chr21:36714642-36715081 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 1-437 |
| Cow position: | chr21:8678351-8677901 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-443 |
| Cow position: | chr21:2416245-2416684 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 1-444 |
| Cow position: | chr21:4183533-4183981 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 235 |
| Conread position: | 1-468 |
| Cow position: | chr21:359026-359521 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 1-468 |
| Cow position: | chr21:2541404-2540922 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 335 |
| Conread position: | 1-468 |
| Cow position: | chr21:9891612-9892093 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 1-468 |
| Cow position: | chr21:23811885-23812364 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 2-416 |
| Cow position: | chr21:2530116-2529690 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 2-416 |
| Cow position: | chr21:27282397-27282823 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 255 |
| Conread position: | 2-416 |
| Cow position: | chr21:34293028-34293453 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 136 |
| Conread position: | 2-447 |
| Cow position: | chr21:21914294-21914751 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 230 |
| Conread position: | 3-416 |
| Cow position: | chr21:30599909-30599488 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 218 |
| Conread position: | 31-356 |
| Cow position: | chr21:47939527-47939849 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 53-416 |
| Cow position: | chr21:40271613-40271238 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 57-442 |
| Cow position: | chr21:6699498-6699117 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 65-416 |
| Cow position: | chr21:3798293-3797933 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 81-390 |
| Cow position: | chr21:21259044-21259352 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 82, 102 |
| Conread position: | 83-404 |
| Cow position: | chr21:26823138-26822808 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 92-403 |
| Cow position: | chr21:18820311-18820005 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 112-440 |
| Cow position: | chr21:2502019-2502352 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 128 |
| Conread position: | 114-416 |
| Cow position: | chr21:1191291-1191601 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 124-436 |
| Cow position: | chr21:4086939-4087261 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 161-405 |
| Cow position: | chr21:26650219-26650468 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 193-405 |
| Cow position: | chr21:3615537-3615738 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 193-416 |
| Cow position: | chr21:35143983-35144194 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 216-468 |
| Cow position: | chr21:30226257-30226504 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 208, 188 |
| Conread position: | 240-416 |
| Cow position: | chr21:33251768-33251943 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 240-416 |
| Cow position: | chr21:34258728-34258551 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 254-466 |
| Cow position: | chr21:9870022-9870231 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 168, 174 |
| Conread position: | 271-405 |
| Cow position: | chr21:2716425-2716291 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.