Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-190
Cow position: chr22:1285095-1284899 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 126

Conread position: 1-191
Cow position: chr22:6985091-6985290 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-252
Cow position: chr22:1293659-1293395 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 39

Conread position: 1-253
Cow position: chr22:37265290-37265556 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 1-290
Cow position: chr22:27386595-27386292 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-309
Cow position: chr22:12732008-12731695 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 194
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 56, 88

Conread position: 1-335
Cow position: chr22:11782698-11782342 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 14

Conread position: 1-344
Cow position: chr22:36274646-36275002 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 53, 84

Conread position: 1-356
Cow position: chr22:24949666-24950035 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-362
Cow position: chr22:32485500-32485142 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-393
Cow position: chr22:33351005-33351423 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 53, 230

Conread position: 1-396
Cow position: chr22:36183595-36184001 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 291

Conread position: 1-402
Cow position: chr22:5233469-5233054 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-402
Cow position: chr22:5933148-5932749 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 170

Conread position: 1-402
Cow position: chr22:46547828-46547413 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 276

Conread position: 1-403
Cow position: chr22:15851170-15851571 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 124

Conread position: 1-403
Cow position: chr22:34598511-34598912 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 72

Conread position: 1-405
Cow position: chr22:117979-117588 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-405
Cow position: chr22:536937-537355 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr22:1878628-1879047 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr22:3278517-3278102 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 83

Conread position: 1-405
Cow position: chr22:10546481-10546899 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr22:16200322-16200728 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-405
Cow position: chr22:18816545-18816132 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 116

Conread position: 1-405
Cow position: chr22:21589169-21589578 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 26

Conread position: 1-405
Cow position: chr22:27283885-27284285 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 58

Conread position: 1-405
Cow position: chr22:27309937-27309519 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 1-405
Cow position: chr22:35672519-35672102 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr22:36736599-36737013 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 236

Conread position: 1-405
Cow position: chr22:37131486-37131887 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 136

Conread position: 1-405
Cow position: chr22:39469683-39469269 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 135

Conread position: 1-410
Cow position: chr22:1319233-1319656 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-415
Cow position: chr22:17328903-17328475 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr22:158066-157641 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 212

Conread position: 1-416
Cow position: chr22:525840-525428 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 1-416
Cow position: chr22:560863-560440 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 14

Conread position: 1-416
Cow position: chr22:5672573-5673002 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 276

Conread position: 1-416
Cow position: chr22:19143863-19143434 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr22:34168168-34168596 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 377

Conread position: 1-416
Cow position: chr22:36861694-36861265 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr22:42991008-42991437 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr22:44933816-44934244 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr22:46853178-46853607 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 311

Conread position: 1-417
Cow position: chr22:693468-693893 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 96

Conread position: 1-417
Cow position: chr22:871020-870601 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 284
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 53, 108

Conread position: 1-417
Cow position: chr22:36533901-36533475 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-417
Cow position: chr22:44489723-44490155 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-433
Cow position: chr22:32348142-32347707 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 138

Conread position: 1-434
Cow position: chr22:8136360-8135922 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 118

Conread position: 1-438
Cow position: chr22:327320-326883 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 91

Conread position: 1-444
Cow position: chr22:31313177-31313637 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 398

Conread position: 1-444
Cow position: chr22:31335197-31334740 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 252

Conread position: 1-446
Cow position: chr22:11030796-11031256 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-450
Cow position: chr22:44353111-44352664 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 45

Conread position: 1-451
Cow position: chr22:34606899-34607357 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 302
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 37

Conread position: 1-468
Cow position: chr22:3306896-3306414 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 128

Conread position: 1-468
Cow position: chr22:6503828-6503359 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 88

Conread position: 1-468
Cow position: chr22:7277360-7277834 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 127

Conread position: 1-468
Cow position: chr22:13917339-13917822 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 2-338
Cow position: chr22:36267207-36267551 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 233
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 112

Conread position: 2-373
Cow position: chr22:46635860-46635492 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 256
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 92, 26

Conread position: 2-405
Cow position: chr22:44369783-44369372 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 154

Conread position: 2-466
Cow position: chr22:1321449-1321902 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 128

Conread position: 2-466
Cow position: chr22:44609442-44609909 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 53

Conread position: 3-416
Cow position: chr22:39882338-39881911 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 275

Conread position: 3-446
Cow position: chr22:1270672-1270239 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 146

Conread position: 5-431
Cow position: chr22:44475095-44475515 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 159

Conread position: 6-405
Cow position: chr22:15314107-15313698 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 128

Conread position: 7-417
Cow position: chr22:15956849-15956439 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 47

Conread position: 15-405
Cow position: chr22:20240991-20240588 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 331

Conread position: 15-416
Cow position: chr22:5307954-5308369 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 42-414
Cow position: chr22:293280-292907 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 256
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 240

Conread position: 43-450
Cow position: chr22:1048289-1048700 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 95

Conread position: 45-451
Cow position: chr22:36581286-36580885 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 269
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 9, 59

Conread position: 47-416
Cow position: chr22:42771359-42771720 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 89

Conread position: 58-405
Cow position: chr22:10909942-10909579 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 169

Conread position: 66-355
Cow position: chr22:13675255-13674968 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 197
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 48

Conread position: 66-405
Cow position: chr22:6020566-6020916 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 75-405
Cow position: chr22:46581667-46581334 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 37

Conread position: 92-382
Cow position: chr22:44396383-44396681 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 175

Conread position: 99-411
Cow position: chr22:309717-310037 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 63, 252

Conread position: 99-460
Cow position: chr22:41419755-41419384 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 83

Conread position: 114-336
Cow position: chr22:37073251-37073028 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 62, 33

Conread position: 125-273
Cow position: chr22:1860846-1860689 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 32, 147

Conread position: 141-416
Cow position: chr22:35943222-35942947 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 7

Conread position: 182-328
Cow position: chr22:31936669-31936521 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 142, 0

Conread position: 191-466
Cow position: chr22:1283610-1283341 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 232, 167

Conread position: 193-372
Cow position: chr22:8740855-8740686 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 193-408
Cow position: chr22:18027322-18027536 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 203-468
Cow position: chr22:23853383-23853648 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 16, 56

Conread position: 204-442
Cow position: chr22:36592460-36592223 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 163
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 119, 110

Conread position: 207-416
Cow position: chr22:38938027-38937818 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 56

Conread position: 217-381
Cow position: chr22:45879544-45879379 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 111, 0

Conread position: 255-405
Cow position: chr22:16813990-16814140 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 259-416
Cow position: chr22:1860847-1861004 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 259-417
Cow position: chr22:37266081-37266241 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 148, 0

Show alignments to all cow chromosomes.