Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-256 |
| Cow position: | chr23:16481517-16481268 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 1-312 |
| Cow position: | chr23:4815909-4816236 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-352 |
| Cow position: | chr23:1025223-1024863 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 1-359 |
| Cow position: | chr23:3013481-3013854 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-374 |
| Cow position: | chr23:5874938-5874559 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 292 |
| Conread position: | 1-393 |
| Cow position: | chr23:20156397-20155973 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-405 |
| Cow position: | chr23:2313401-2312986 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 288 |
| Conread position: | 1-405 |
| Cow position: | chr23:4359666-4360084 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr23:4888517-4888927 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 1-405 |
| Cow position: | chr23:5779248-5778833 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 272 |
| Conread position: | 1-405 |
| Cow position: | chr23:16617012-16616592 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 1-405 |
| Cow position: | chr23:28217127-28217544 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 1-405 |
| Cow position: | chr23:31446651-31447069 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-410 |
| Cow position: | chr23:15525447-15525867 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 1-414 |
| Cow position: | chr23:19332562-19332146 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 1-416 |
| Cow position: | chr23:967509-967085 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 260 |
| Conread position: | 1-416 |
| Cow position: | chr23:988804-988383 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 138 |
| Conread position: | 1-416 |
| Cow position: | chr23:2795725-2795303 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 1-416 |
| Cow position: | chr23:3881862-3881440 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 1-416 |
| Cow position: | chr23:4276791-4277220 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 1-416 |
| Cow position: | chr23:4509937-4510342 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 1-416 |
| Cow position: | chr23:14965910-14965487 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 218 |
| Conread position: | 1-416 |
| Cow position: | chr23:15220061-15219626 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 1-416 |
| Cow position: | chr23:19489374-19489807 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr23:22147421-22146989 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 397 |
| Conread position: | 1-416 |
| Cow position: | chr23:27399340-27399768 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 1-416 |
| Cow position: | chr23:30636465-30636036 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 252 |
| Conread position: | 1-416 |
| Cow position: | chr23:36031535-36031107 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-423 |
| Cow position: | chr23:38578128-38578546 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 1-429 |
| Cow position: | chr23:25684222-25683786 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 1-431 |
| Cow position: | chr23:4751850-4752267 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 1-444 |
| Cow position: | chr23:22875798-22875392 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 309 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 1-450 |
| Cow position: | chr23:14974725-14974263 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 256 |
| Conread position: | 1-450 |
| Cow position: | chr23:20302051-20302508 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 391 |
| Conread position: | 2-124 |
| Cow position: | chr23:8980655-8980528 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-396 |
| Cow position: | chr23:28913249-28913640 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 115 |
| Conread position: | 2-402 |
| Cow position: | chr23:11778322-11778739 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 2-405 |
| Cow position: | chr23:15176911-15177325 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 236 |
| Conread position: | 2-416 |
| Cow position: | chr23:2027282-2026854 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 138 |
| Conread position: | 2-416 |
| Cow position: | chr23:4640788-4640359 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 190 |
| Conread position: | 2-417 |
| Cow position: | chr23:7273492-7273897 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 2-440 |
| Cow position: | chr23:19950747-19950290 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 3-288 |
| Cow position: | chr23:2340242-2340532 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 3-374 |
| Cow position: | chr23:2524357-2523974 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 6-405 |
| Cow position: | chr23:4434306-4434710 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 28-416 |
| Cow position: | chr23:31591945-31591537 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 53-435 |
| Cow position: | chr23:29474662-29474277 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 46 |
| Conread position: | 53-466 |
| Cow position: | chr23:1327569-1327156 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 147 |
| Conread position: | 57-405 |
| Cow position: | chr23:2757489-2757848 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 64-414 |
| Cow position: | chr23:10903434-10903800 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 101, 39 |
| Conread position: | 81-444 |
| Cow position: | chr23:2716309-2716675 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 334 |
| Conread position: | 98-434 |
| Cow position: | chr23:36211190-36210835 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 247 |
| Conread position: | 105-391 |
| Cow position: | chr23:31595292-31594996 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 105-416 |
| Cow position: | chr23:2574481-2574800 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 218 |
| Conread position: | 116-366 |
| Cow position: | chr23:19450213-19450466 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 128-416 |
| Cow position: | chr23:8980328-8980056 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 191-468 |
| Cow position: | chr23:16615956-16615680 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 64, 101 |
| Conread position: | 200-416 |
| Cow position: | chr23:29452270-29452053 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 139, 9 |
| Conread position: | 201-405 |
| Cow position: | chr23:2765403-2765199 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-451 |
| Cow position: | chr23:31650790-31650616 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 151, 43 |
| Conread position: | 286-468 |
| Cow position: | chr23:1402745-1402565 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 7 |
Show alignments to all cow chromosomes.