Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-162 |
| Cow position: | chr24:12288804-12288641 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 1-194 |
| Cow position: | chr24:35987422-35987233 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 1-218 |
| Cow position: | chr24:2636042-2636270 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 53, 212 |
| Conread position: | 1-221 |
| Cow position: | chr24:6645337-6645569 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-229 |
| Cow position: | chr24:7061024-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 1-235 |
| Cow position: | chr24:17187468-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 1-276 |
| Cow position: | chr24:39678353-39678620 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 87 |
| Conread position: | 1-308 |
| Cow position: | chr24:12161801-12162118 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 138 |
| Conread position: | 1-312 |
| Cow position: | chr24:12131562-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 1-356 |
| Cow position: | chr24:22952058-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-377 |
| Cow position: | chr24:14885318-14884942 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 162, 31 |
| Conread position: | 1-386 |
| Cow position: | chr24:44017468-44017867 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-388 |
| Cow position: | chr24:15392387-15392017 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 138 |
| Conread position: | 1-401 |
| Cow position: | chr24:12114117-12113711 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 168 |
| Conread position: | 1-402 |
| Cow position: | chr24:8030073-8030488 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-402 |
| Cow position: | chr24:9092351-9091948 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 239 |
| Conread position: | 1-402 |
| Cow position: | chr24:9188809-9188395 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 363 |
| Conread position: | 1-402 |
| Cow position: | chr24:35838703-35838283 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 285 |
| Conread position: | 1-405 |
| Cow position: | chr24:148692-148279 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 1-405 |
| Cow position: | chr24:4415603-4415189 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 1-405 |
| Cow position: | chr24:6025173-6024758 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 278 |
| Conread position: | 1-405 |
| Cow position: | chr24:13188107-13188513 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 308 |
| Conread position: | 1-405 |
| Cow position: | chr24:16084737-16084319 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 1-405 |
| Cow position: | chr24:22793096-22793512 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 1-405 |
| Cow position: | chr24:33739422-33739000 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 186 |
| Conread position: | 1-405 |
| Cow position: | chr24:37216926-37217338 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 230 |
| Conread position: | 1-405 |
| Cow position: | chr24:40548799-40549214 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-408 |
| Cow position: | chr24:6083939-6084360 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-412 |
| Cow position: | chr24:6335621-6336029 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 1-412 |
| Cow position: | chr24:12236976-12237400 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 406 |
| Conread position: | 1-415 |
| Cow position: | chr24:6434163-6434592 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 236 |
| Conread position: | 1-415 |
| Cow position: | chr24:12485395-12484967 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-415 |
| Cow position: | chr24:14585016-14585426 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 1-416 |
| Cow position: | chr24:6145282-6145719 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 280 |
| Conread position: | 1-416 |
| Cow position: | chr24:12086120-12086549 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-416 |
| Cow position: | chr24:14384691-14384264 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 257 |
| Conread position: | 1-416 |
| Cow position: | chr24:19833303-19833736 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr24:33933288-33933717 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-444 |
| Cow position: | chr24:35841690-35841243 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 1-468 |
| Cow position: | chr24:6352118-6352583 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 299 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 1-468 |
| Cow position: | chr24:12797842-12797365 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 1-468 |
| Cow position: | chr24:17303675-17303213 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 110, 28 |
| Conread position: | 1-468 |
| Cow position: | chr24:36560161-36559683 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 1-468 |
| Cow position: | chr24:36707773-36708244 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 2-184 |
| Cow position: | chr24:13531614-13531422 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 2-401 |
| Cow position: | chr24:14873418-14873014 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 2-464 |
| Cow position: | chr24:1447483-1447956 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 322 |
| Conread position: | 2-468 |
| Cow position: | chr24:6537473-6537936 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 2-468 |
| Cow position: | chr24:16649377-16648915 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 3-417 |
| Cow position: | chr24:6515121-6514700 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 6-389 |
| Cow position: | chr24:32331252-32331639 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 48, 188 |
| Conread position: | 8-277 |
| Cow position: | chr24:12224540-12224250 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 22-417 |
| Cow position: | chr24:6660665-6660246 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 168 |
| Conread position: | 24-260 |
| Cow position: | chr24:14390784-14390540 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 35-283 |
| Cow position: | chr24:38635711-38635972 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 59-421 |
| Cow position: | chr24:16141061-16141422 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 179 |
| Conread position: | 67-402 |
| Cow position: | chr24:17696976-17696641 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 82-358 |
| Cow position: | chr24:13524126-13524397 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 98-416 |
| Cow position: | chr24:12335750-12335424 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 275 |
| Conread position: | 105-412 |
| Cow position: | chr24:7091564-7091248 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 221 |
| Conread position: | 122-416 |
| Cow position: | chr24:29187331-29187634 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 139-393 |
| Cow position: | chr24:1438118-1437860 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 121 |
| Conread position: | 140-401 |
| Cow position: | chr24:6510761-6510495 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 141-468 |
| Cow position: | chr24:12288324-12287991 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 161 |
| Conread position: | 197-396 |
| Cow position: | chr24:6645834-6646034 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 202-435 |
| Cow position: | chr24:8152868-8152637 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 215-402 |
| Cow position: | chr24:7061539-7061726 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-405 |
| Cow position: | chr24:5993071-5992889 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-432 |
| Cow position: | chr24:16376708-16376888 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 174, 39 |
Show alignments to all cow chromosomes.