Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-145 |
| Cow position: | chr25:18302669-18302818 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-362 |
| Cow position: | chr25:18027747-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-377 |
| Cow position: | chr25:20629456-20629834 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 222 |
| Conread position: | 1-395 |
| Cow position: | chr25:25506529-25506935 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 189 |
| Conread position: | 1-396 |
| Cow position: | chr25:22147373-22147782 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-396 |
| Cow position: | chr25:34347113-34346730 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 161 |
| Conread position: | 1-401 |
| Cow position: | chr25:20777018-20776610 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 1-403 |
| Cow position: | chr25:11375469-11375054 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr25:17589669-17589258 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 1-405 |
| Cow position: | chr25:35362544-35362133 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 128 |
| Conread position: | 1-413 |
| Cow position: | chr25:17560733-17560329 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 53, 113 |
| Conread position: | 1-416 |
| Cow position: | chr25:8674794-8675223 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr25:13780910-13781339 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-416 |
| Cow position: | chr25:17468817-17468395 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 353 |
| Conread position: | 1-416 |
| Cow position: | chr25:18060707-18060295 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 188 |
| Conread position: | 1-416 |
| Cow position: | chr25:18275945-18275521 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 1-416 |
| Cow position: | chr25:18890136-18889708 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr25:34656566-34656139 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 148 |
| Conread position: | 1-429 |
| Cow position: | chr25:36240425-36240870 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 361 |
| Conread position: | 1-444 |
| Cow position: | chr25:11933646-11933195 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 1-450 |
| Cow position: | chr25:12759718-12759257 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 111 |
| Conread position: | 1-468 |
| Cow position: | chr25:18092898-18093370 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 2-405 |
| Cow position: | chr25:32579846-32580261 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 2-416 |
| Cow position: | chr25:12942822-12942393 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 2-416 |
| Cow position: | chr25:14016051-14016472 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 98 |
| Conread position: | 3-266 |
| Cow position: | chr25:33991177-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 51, 74 |
| Conread position: | 3-382 |
| Cow position: | chr25:24218231-24217846 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 48, 137 |
| Conread position: | 3-401 |
| Cow position: | chr25:26922109-26922508 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 196 |
| Conread position: | 3-405 |
| Cow position: | chr25:19916964-19917380 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 6-221 |
| Cow position: | chr25:18173246-18173463 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 6-416 |
| Cow position: | chr25:26279149-26279566 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 11-388 |
| Cow position: | chr25:23345451-23345058 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 21-450 |
| Cow position: | chr25:18255464-18255026 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 24-403 |
| Cow position: | chr25:33665967-33665579 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 36-312 |
| Cow position: | chr25:39560372-39560095 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 53-402 |
| Cow position: | chr25:27022633-27022273 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 64-396 |
| Cow position: | chr25:34014539-34014201 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 113, 237 |
| Conread position: | 82-389 |
| Cow position: | chr25:18421633-18421950 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 81, 149 |
| Conread position: | 89-405 |
| Cow position: | chr25:18195127-18194802 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 102-312 |
| Cow position: | chr25:536820-536602 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 173 |
| Conread position: | 132-468 |
| Cow position: | chr25:33243844-33244169 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 113 |
| Conread position: | 152-405 |
| Cow position: | chr25:9544103-9544357 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 157-416 |
| Cow position: | chr25:18303444-18303707 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 181 |
| Conread position: | 195-438 |
| Cow position: | chr25:19288252-19288016 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 224, 28 |
| Conread position: | 265-405 |
| Cow position: | chr25:6172059-6172199 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.