Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-145 |
| Cow position: | chr28:15035615-15035467 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-162 |
| Cow position: | chr28:17330642-17330480 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 1-183 |
| Cow position: | chr28:15681770-15681951 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 1-250 |
| Cow position: | chr28:24652172-24652427 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 1-267 |
| Cow position: | chr28:26426393-26426117 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 138 |
| Conread position: | 1-269 |
| Cow position: | chr28:15950862-15951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-371 |
| Cow position: | chr28:15920585-15920200 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 273 |
| Conread position: | 1-374 |
| Cow position: | chr28:22827933-22828283 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 1-383 |
| Cow position: | chr28:5565742-5566130 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 255 |
| Conread position: | 1-383 |
| Cow position: | chr28:17667633-17667237 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-389 |
| Cow position: | chr28:22261270-22260868 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 343 |
| Conread position: | 1-401 |
| Cow position: | chr28:24587314-24587729 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 268 |
| Conread position: | 1-402 |
| Cow position: | chr28:7001869-7002285 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-402 |
| Cow position: | chr28:10582105-10581690 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-402 |
| Cow position: | chr28:13440996-13440581 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-402 |
| Cow position: | chr28:18520580-18520164 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-402 |
| Cow position: | chr28:24667461-24667874 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 1-403 |
| Cow position: | chr28:1387514-1387104 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 267 |
| Conread position: | 1-403 |
| Cow position: | chr28:8721568-8721153 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 328 |
| Conread position: | 1-405 |
| Cow position: | chr28:1953011-1953428 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 1-405 |
| Cow position: | chr28:5114919-5114513 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 182 |
| Conread position: | 1-405 |
| Cow position: | chr28:6780448-6780035 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 1-405 |
| Cow position: | chr28:7740374-7740779 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 1-405 |
| Cow position: | chr28:7822138-7822556 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr28:9155404-9154987 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 313 |
| Conread position: | 1-405 |
| Cow position: | chr28:13459852-13460268 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-405 |
| Cow position: | chr28:14750429-14750845 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 1-405 |
| Cow position: | chr28:15378111-15377694 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 306 |
| Conread position: | 1-406 |
| Cow position: | chr28:7901232-7901661 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 279 |
| Conread position: | 1-416 |
| Cow position: | chr28:2591797-2592224 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 271 |
| Conread position: | 1-416 |
| Cow position: | chr28:3192910-3192482 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 138 |
| Conread position: | 1-416 |
| Cow position: | chr28:9954018-9954442 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 1-416 |
| Cow position: | chr28:12150196-12150613 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 1-416 |
| Cow position: | chr28:14705791-14705362 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 310 |
| Conread position: | 1-416 |
| Cow position: | chr28:32792498-32792071 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 326 |
| Conread position: | 1-416 |
| Cow position: | chr28:33252198-33252621 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 62 |
| Conread position: | 1-417 |
| Cow position: | chr28:9137168-9136742 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 287 |
| Conread position: | 1-450 |
| Cow position: | chr28:34648824-34649287 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 1-464 |
| Cow position: | chr28:10619225-10618761 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 1-468 |
| Cow position: | chr28:2989804-2989344 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 1-468 |
| Cow position: | chr28:5812589-5813047 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 1-468 |
| Cow position: | chr28:7790417-7789921 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 54 |
| Conread position: | 1-468 |
| Cow position: | chr28:21358895-21359364 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 2-276 |
| Cow position: | chr28:7817103-7817373 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 2-390 |
| Cow position: | chr28:1504736-1505135 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 27 |
| Conread position: | 2-405 |
| Cow position: | chr28:1814987-1814569 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 2-405 |
| Cow position: | chr28:2083485-2083894 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 2-416 |
| Cow position: | chr28:8378445-8378878 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 2-416 |
| Cow position: | chr28:17388362-17388791 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 6-396 |
| Cow position: | chr28:782281-782684 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 15-191 |
| Cow position: | chr28:22233794-22233610 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 18-405 |
| Cow position: | chr28:2724993-2724594 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 377 |
| Conread position: | 31-301 |
| Cow position: | chr28:19563154-19562881 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 30 |
| Conread position: | 41-405 |
| Cow position: | chr28:12410299-12409927 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 251 |
| Conread position: | 51-416 |
| Cow position: | chr28:4380904-4380535 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 54-389 |
| Cow position: | chr28:12233060-12232719 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 67-468 |
| Cow position: | chr28:21325755-21326141 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 36 |
| Conread position: | 89-451 |
| Cow position: | chr28:22065763-22065399 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 104, 170 |
| Conread position: | 90-280 |
| Cow position: | chr28:17935064-17934863 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 98-402 |
| Cow position: | chr28:1167899-1167586 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 98-416 |
| Cow position: | chr28:5751724-5751396 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 98-416 |
| Cow position: | chr28:34593961-34594288 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 113-383 |
| Cow position: | chr28:17311946-17312213 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 117-416 |
| Cow position: | chr28:29819735-29820043 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 206 |
| Conread position: | 123-414 |
| Cow position: | chr28:18181138-18180849 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 187 |
| Conread position: | 126-413 |
| Cow position: | chr28:567971-568261 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 32, 113 |
| Conread position: | 154-466 |
| Cow position: | chr28:5797475-5797794 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 157-417 |
| Cow position: | chr28:1931939-1931672 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 159-415 |
| Cow position: | chr28:17324303-17324036 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 34, 165 |
| Conread position: | 162-412 |
| Cow position: | chr28:2846122-2845869 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 167-368 |
| Cow position: | chr28:18101888-18101684 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 184 |
| Conread position: | 178-402 |
| Cow position: | chr28:6539190-6538966 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-435 |
| Cow position: | chr28:10463068-10462821 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 195-405 |
| Cow position: | chr28:485474-485264 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-444 |
| Cow position: | chr28:15682213-15682450 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 221, 13 |
| Conread position: | 211-453 |
| Cow position: | chr28:22233293-22233048 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 195, 81 |
| Conread position: | 211-468 |
| Cow position: | chr28:10071089-10071342 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 212, 68 |
| Conread position: | 233-405 |
| Cow position: | chr28:13490277-13490449 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 235-416 |
| Cow position: | chr28:5937609-5937785 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 245-405 |
| Cow position: | chr28:30805549-30805389 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-405 |
| Cow position: | chr28:26426091-26425953 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-417 |
| Cow position: | chr28:24652939-24652806 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 301-455 |
| Cow position: | chr28:11357519-11357363 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.