Cow genome map
| Conread name: | Ss1.1-rcbl0_010689.5 |
| Conread position: | 1-229 |
| Cow position: | chr29:31180970-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-237 |
| Cow position: | chr29:21427208-21426962 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 53, 184 |
| Conread position: | 1-245 |
| Cow position: | chr29:21246416-21246674 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-256 |
| Cow position: | chr29:28060819-28060549 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-273 |
| Cow position: | chr29:24198775-24198489 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-296 |
| Cow position: | chr29:15969304-15968996 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 267 |
| Conread position: | 1-301 |
| Cow position: | chr29:16109576-16109887 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 1-305 |
| Cow position: | chr29:13853175-13852861 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 269 |
| Conread position: | 1-340 |
| Cow position: | chr29:17662770-17663103 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 1-340 |
| Cow position: | chr29:32315887-32316240 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-401 |
| Cow position: | chr29:14013319-14013723 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 115 |
| Conread position: | 1-401 |
| Cow position: | chr29:14073092-14072688 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 115 |
| Conread position: | 1-402 |
| Cow position: | chr29:10648401-10647990 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 1-402 |
| Cow position: | chr29:27981071-27980658 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 377 |
| Conread position: | 1-403 |
| Cow position: | chr29:16769979-16770385 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 1-404 |
| Cow position: | chr29:10848264-10847825 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-405 |
| Cow position: | chr29:48629-48216 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 1-405 |
| Cow position: | chr29:610765-610348 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 1-405 |
| Cow position: | chr29:7431369-7430955 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 327 |
| Conread position: | 1-405 |
| Cow position: | chr29:7840643-7841060 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 286 |
| Conread position: | 1-405 |
| Cow position: | chr29:19884916-19885334 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-405 |
| Cow position: | chr29:20251006-20251423 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 306 |
| Conread position: | 1-405 |
| Cow position: | chr29:27250488-27250078 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 253 |
| Conread position: | 1-405 |
| Cow position: | chr29:34799963-34799543 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 328 |
| Conread position: | 1-405 |
| Cow position: | chr29:35296721-35297138 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 138 |
| Conread position: | 1-405 |
| Cow position: | chr29:45459563-45459980 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 1-408 |
| Cow position: | chr29:43322406-43322822 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 292 |
| Conread position: | 1-415 |
| Cow position: | chr29:15895004-15894576 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-416 |
| Cow position: | chr29:2099691-2100120 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-416 |
| Cow position: | chr29:2689749-2690175 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 294 |
| Conread position: | 1-416 |
| Cow position: | chr29:2841522-2841098 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 223 |
| Conread position: | 1-416 |
| Cow position: | chr29:5957449-5957879 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 410 |
| Conread position: | 1-416 |
| Cow position: | chr29:6266647-6266226 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 156 |
| Conread position: | 1-416 |
| Cow position: | chr29:10824109-10823694 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 152 |
| Conread position: | 1-416 |
| Cow position: | chr29:11049129-11049553 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 1-416 |
| Cow position: | chr29:16022376-16022805 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr29:19623400-19622972 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 80 |
| Conread position: | 1-416 |
| Cow position: | chr29:19652955-19653383 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 1-416 |
| Cow position: | chr29:21543519-21543094 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 169 |
| Conread position: | 1-416 |
| Cow position: | chr29:25932697-25932269 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 1-416 |
| Cow position: | chr29:26164976-26164547 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-416 |
| Cow position: | chr29:27040917-27040497 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 1-416 |
| Cow position: | chr29:32539657-32540085 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 239 |
| Conread position: | 1-416 |
| Cow position: | chr29:35196519-35196939 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 1-416 |
| Cow position: | chr29:38226848-38227255 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 1-416 |
| Cow position: | chr29:39079859-39079437 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 1-427 |
| Cow position: | chr29:2750545-2750134 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 1-429 |
| Cow position: | chr29:11855445-11855886 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 1-436 |
| Cow position: | chr29:1715095-1715537 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 1-444 |
| Cow position: | chr29:5983333-5982903 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 193 |
| Conread position: | 1-451 |
| Cow position: | chr29:30811379-30811833 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 1-466 |
| Cow position: | chr29:104420-104886 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 1-468 |
| Cow position: | chr29:15950337-15949864 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 2-400 |
| Cow position: | chr29:11841514-11841916 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 2-405 |
| Cow position: | chr29:43366150-43365738 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 80 |
| Conread position: | 2-416 |
| Cow position: | chr29:23975683-23976115 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 2-416 |
| Cow position: | chr29:40503132-40502707 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 116 |
| Conread position: | 4-158 |
| Cow position: | chr29:43791030-43791189 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-405 |
| Cow position: | chr29:18857092-18856680 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 4-416 |
| Cow position: | chr29:14585777-14586197 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 221 |
| Conread position: | 22-405 |
| Cow position: | chr29:670189-669793 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 231 |
| Conread position: | 31-416 |
| Cow position: | chr29:45587469-45587085 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 147 |
| Conread position: | 44-435 |
| Cow position: | chr29:803457-803060 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 66-389 |
| Cow position: | chr29:42650199-42650534 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 172 |
| Conread position: | 66-389 |
| Cow position: | chr29:42802059-42802394 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 172 |
| Conread position: | 70-416 |
| Cow position: | chr29:2466418-2466059 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 78-405 |
| Cow position: | chr29:13581998-13582332 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 188 |
| Conread position: | 89-468 |
| Cow position: | chr29:9643819-9643433 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 143 |
| Conread position: | 90-466 |
| Cow position: | chr29:22966318-22965934 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 11, 217 |
| Conread position: | 98-404 |
| Cow position: | chr29:10844200-10844503 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 98-418 |
| Cow position: | chr29:4056098-4056427 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 112-338 |
| Cow position: | chr29:12796400-12796168 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 128-416 |
| Cow position: | chr29:410547-410250 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 214-405 |
| Cow position: | chr29:34925552-34925743 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-405 |
| Cow position: | chr29:31181492-31181679 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 226-468 |
| Cow position: | chr29:24709163-24708921 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 233-416 |
| Cow position: | chr29:21426932-21426755 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 276-468 |
| Cow position: | chr29:14086313-14086123 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 284-415 |
| Cow position: | chr29:15968718-15968587 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.