Cow genome map

Conread name: Ss1.1-rcbl0_010689.5

Conread position: 1-124
Cow position: chr4:12607936-12607808 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 116

Conread position: 1-126
Cow position: chr4:10408350-10408480 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 1-126
Cow position: chr4:23114607-23114477 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 1-239
Cow position: chr4:31668883-31669129 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 135

Conread position: 1-243
Cow position: chr4:1371445-1371179 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 1-259
Cow position: chr4:21564715-21564961 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 122

Conread position: 1-282
Cow position: chr4:33493381-33493672 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 127

Conread position: 1-312
Cow position: chr4:496373-496064 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 36

Conread position: 1-362
Cow position: chr4:4905723-4906090 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 101

Conread position: 1-366
Cow position: chr4:4176006-4176377 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 240
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 142

Conread position: 1-370
Cow position: chr4:39272371-39271985 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 359

Conread position: 1-382
Cow position: chr4:1464359-1463961 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 279

Conread position: 1-385
Cow position: chr4:528562-528960 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-389
Cow position: chr4:29532145-29531744 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 257

Conread position: 1-396
Cow position: chr4:3961161-3961569 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-402
Cow position: chr4:158084-158499 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-402
Cow position: chr4:25600043-25599635 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 1-405
Cow position: chr4:101360-100946 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 135

Conread position: 1-405
Cow position: chr4:355480-355896 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 289

Conread position: 1-405
Cow position: chr4:602563-602980 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr4:1931051-1930637 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 29

Conread position: 1-405
Cow position: chr4:3125350-3125782 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 1-405
Cow position: chr4:5879740-5880152 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 225

Conread position: 1-405
Cow position: chr4:13547597-13548016 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-405
Cow position: chr4:18424951-18424538 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 185

Conread position: 1-405
Cow position: chr4:30307883-30307472 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 1-405
Cow position: chr4:33073528-33073123 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 101

Conread position: 1-405
Cow position: chr4:43880678-43881095 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 271

Conread position: 1-405
Cow position: chr4:44724652-44725070 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 1-405
Cow position: chr4:47764601-47764184 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 301

Conread position: 1-405
Cow position: chr4:65223965-65223547 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-406
Cow position: chr4:32211736-32212155 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-408
Cow position: chr4:24445630-24445217 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 92

Conread position: 1-408
Cow position: chr4:27333012-27333425 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 260

Conread position: 1-414
Cow position: chr4:26887274-26886869 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 1-416
Cow position: chr4:6490777-6490367 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 1-416
Cow position: chr4:16359456-16359881 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 42

Conread position: 1-416
Cow position: chr4:17926685-17926257 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-416
Cow position: chr4:36895943-36896365 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 251

Conread position: 1-416
Cow position: chr4:45049730-45049301 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 356

Conread position: 1-416
Cow position: chr4:47718038-47717609 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 283

Conread position: 1-416
Cow position: chr4:57979200-57979625 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 352

Conread position: 1-416
Cow position: chr4:66179419-66178990 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-416
Cow position: chr4:66925574-66925995 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 99

Conread position: 1-417
Cow position: chr4:6269059-6268629 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 359

Conread position: 1-417
Cow position: chr4:12241650-12241219 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-435
Cow position: chr4:11393767-11393328 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 219

Conread position: 1-444
Cow position: chr4:13492145-13492597 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 296

Conread position: 1-468
Cow position: chr4:28830609-28831073 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 99

Conread position: 1-468
Cow position: chr4:34185294-34184838 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 27

Conread position: 1-468
Cow position: chr4:46663771-46664243 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 24

Conread position: 2-402
Cow position: chr4:16056174-16056585 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 125

Conread position: 2-416
Cow position: chr4:11618431-11618848 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 26

Conread position: 2-416
Cow position: chr4:18516466-18516894 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 2-416
Cow position: chr4:41331010-41331436 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 135

Conread position: 2-416
Cow position: chr4:43320066-43319649 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 235

Conread position: 2-416
Cow position: chr4:48025971-48026394 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 11

Conread position: 2-451
Cow position: chr4:1497183-1496728 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 306
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 7, 86

Conread position: 2-466
Cow position: chr4:17530850-17530383 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 306
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 110

Conread position: 3-468
Cow position: chr4:21338417-21337956 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 25

Conread position: 6-429
Cow position: chr4:40824671-40824242 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 274
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 123

Conread position: 7-363
Cow position: chr4:62565563-62565923 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 244
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 12, 27

Conread position: 8-396
Cow position: chr4:41119590-41119991 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 9

Conread position: 9-468
Cow position: chr4:60264983-60264517 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 19

Conread position: 10-420
Cow position: chr4:51044313-51043931 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 288
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 44, 124

Conread position: 21-330
Cow position: chr4:6214963-6214647 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 33, 117

Conread position: 21-413
Cow position: chr4:969449-969048 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 273
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 33, 119

Conread position: 21-413
Cow position: chr4:22471778-22472163 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 255
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 10

Conread position: 37-444
Cow position: chr4:8598543-8598133 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 91

Conread position: 42-340
Cow position: chr4:15263376-15263068 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 205
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 12

Conread position: 53-316
Cow position: chr4:23493370-23493635 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 30, 76

Conread position: 92-405
Cow position: chr4:12586963-12587285 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 99-402
Cow position: chr4:61256568-61256875 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 189

Conread position: 125-405
Cow position: chr4:9355073-9354784 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 142-413
Cow position: chr4:54157725-54157988 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 157-303
Cow position: chr4:24198482-24198329 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 191-331
Cow position: chr4:27443227-27443370 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 191-450
Cow position: chr4:11384732-11384989 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 123

Conread position: 193-450
Cow position: chr4:15193826-15194083 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 127

Conread position: 194-405
Cow position: chr4:9587039-9587250 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 219-416
Cow position: chr4:10408479-10408671 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 107, 7

Conread position: 223-405
Cow position: chr4:4415887-4416069 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 248-444
Cow position: chr4:31565475-31565274 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 254-405
Cow position: chr4:41954308-41954461 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 254-405
Cow position: chr4:41957963-41958116 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 267-405
Cow position: chr4:18190255-18190392 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 271-415
Cow position: chr4:31669122-31669268 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.