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Cow genome map

           
Conread name:
           
Ss1.1-rcbl0_011794.5
        

               
Conread position:
               
8-332
               

               
Cow position:
               
chr1:78361330-78361645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
130, 89
               

               
Conread position:
               
11-405
               

               
Cow position:
               
chr1:22344117-22344485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 42
               

               
Conread position:
               
11-450
               

               
Cow position:
               
chr1:67287017-67287443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 120
               

               
Conread position:
               
12-442
               

               
Cow position:
               
chr1:22842828-22843252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 9
               

               
Conread position:
               
14-326
               

               
Cow position:
               
chr1:21720399-21720703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 112
               

               
Conread position:
               
14-331
               

               
Cow position:
               
chr1:66685939-66685622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
14-450
               

               
Cow position:
               
chr1:31418352-31417896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 281
               

               
Conread position:
               
15-290
               

               
Cow position:
               
chr1:91445466-91445734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
264, 45
               

               
Conread position:
               
15-329
               

               
Cow position:
               
chr1:79110345-79110649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
15-382
               

               
Cow position:
               
chr1:63502040-63502406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 53
               

               
Conread position:
               
15-428
               

               
Cow position:
               
chr1:30059111-30059516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 100
               

               
Conread position:
               
15-446
               

               
Cow position:
               
chr1:29033302-29033733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
15-446
               

               
Cow position:
               
chr1:67328077-67327654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 120
               

               
Conread position:
               
19-427
               

               
Cow position:
               
chr1:40512856-40512447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
21-196
               

               
Cow position:
               
chr1:34690216-34690384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
158, 72
               

               
Conread position:
               
21-232
               

               
Cow position:
               
chr1:29413949-29413747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
21-288
               

               
Cow position:
               
chr1:38387151-38386896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
209, 40
               

               
Conread position:
               
22-135
               

               
Cow position:
               
chr1:94253444-94253557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
22-242
               

               
Cow position:
               
chr1:58179502-58179293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
22-260
               

               
Cow position:
               
chr1:57263046-57263279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
22-277
               

               
Cow position:
               
chr1:25886557-25886316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
240, 31
               

               
Conread position:
               
22-426
               

               
Cow position:
               
chr1:31330191-31329796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
234, 89
               

               
Conread position:
               
22-444
               

               
Cow position:
               
chr1:33389317-33389745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
22-445
               

               
Cow position:
               
chr1:72943735-72944152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 86
               

               
Conread position:
               
22-446
               

               
Cow position:
               
chr1:77111814-77111416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
335, 65
               

               
Conread position:
               
22-449
               

               
Cow position:
               
chr1:98659686-98659266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
23-187
               

               
Cow position:
               
chr1:84150199-84150361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
52, 46
               

               
Conread position:
               
23-244
               

               
Cow position:
               
chr1:7143561-7143348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 20
               

               
Conread position:
               
23-443
               

               
Cow position:
               
chr1:15026551-15026969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 82
               

               
Conread position:
               
23-449
               

               
Cow position:
               
chr1:59647471-59647902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
26-429
               

               
Cow position:
               
chr1:88270013-88269616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 116
               

               
Conread position:
               
27-339
               

               
Cow position:
               
chr1:44101165-44100856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
28-335
               

               
Cow position:
               
chr1:73011309-73011610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
29-396
               

               
Cow position:
               
chr1:67080086-67079718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
33-424
               

               
Cow position:
               
chr1:29609457-29609079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 99
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr1:99675524-99675202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
142, 6
               

               
Conread position:
               
38-436
               

               
Cow position:
               
chr1:18013294-18012900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
39-284
               

               
Cow position:
               
chr1:72137209-72137455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
39-450
               

               
Cow position:
               
chr1:55321934-55321525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
45-243
               

               
Cow position:
               
chr1:59934365-59934565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 127
               

               
Conread position:
               
47-436
               

               
Cow position:
               
chr1:31811302-31811679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
152, 88
               

               
Conread position:
               
60-284
               

               
Cow position:
               
chr1:86610071-86610285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
62-443
               

               
Cow position:
               
chr1:56144108-56143723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
64-196
               

               
Cow position:
               
chr1:24651307-24651438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
68-444
               

               
Cow position:
               
chr1:11291880-11291498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
68-449
               

               
Cow position:
               
chr1:40053582-40053969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
69-449
               

               
Cow position:
               
chr1:21087641-21088028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
71-429
               

               
Cow position:
               
chr1:30518935-30519285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 78
               

               
Conread position:
               
87-445
               

               
Cow position:
               
chr1:72186617-72186268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 7
               

               
Conread position:
               
88-445
               

               
Cow position:
               
chr1:63605520-63605162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 6
               

               
Conread position:
               
97-399
               

               
Cow position:
               
chr1:23052057-23052357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 116
               

               
Conread position:
               
121-439
               

               
Cow position:
               
chr1:56937746-56937428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
126-350
               

               
Cow position:
               
chr1:61309306-61309524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
134-445
               

               
Cow position:
               
chr1:12061912-12061604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
135-436
               

               
Cow position:
               
chr1:32662036-32662351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 155
               

               
Conread position:
               
135-445
               

               
Cow position:
               
chr1:21999652-21999340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 44
               

               
Conread position:
               
136-444
               

               
Cow position:
               
chr1:28873377-28873690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
136-445
               

               
Cow position:
               
chr1:52358971-52358661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 43
               

               
Conread position:
               
136-448
               

               
Cow position:
               
chr1:71741453-71741152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
220, 6
               

               
Conread position:
               
145-445
               

               
Cow position:
               
chr1:69922125-69921821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
145-446
               

               
Cow position:
               
chr1:58336148-58336453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
146-283
               

               
Cow position:
               
chr1:97124122-97124260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
146-297
               

               
Cow position:
               
chr1:1461018-1460868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
146-436
               

               
Cow position:
               
chr1:72081093-72081385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
146-439
               

               
Cow position:
               
chr1:3385706-3385411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
146-441
               

               
Cow position:
               
chr1:97226397-97226097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 261
               

               
Conread position:
               
146-444
               

               
Cow position:
               
chr1:58883753-58883452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
146-445
               

               
Cow position:
               
chr1:8825364-8825666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
146-445
               

               
Cow position:
               
chr1:33551238-33551540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
146-445
               

               
Cow position:
               
chr1:49973876-49973574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
146-446
               

               
Cow position:
               
chr1:25179716-25179413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
146-446
               

               
Cow position:
               
chr1:102549549-102549846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 168
               

               
Conread position:
               
146-447
               

               
Cow position:
               
chr1:79636620-79636338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
147-274
               

               
Cow position:
               
chr1:57568270-57568396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
147-296
               

               
Cow position:
               
chr1:56193616-56193467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-397
               

               
Cow position:
               
chr1:89770350-89770095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
147-446
               

               
Cow position:
               
chr1:17941472-17941170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
148-283
               

               
Cow position:
               
chr1:62853535-62853402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
148-382
               

               
Cow position:
               
chr1:33712384-33712616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
209, 15
               

               
Conread position:
               
149-445
               

               
Cow position:
               
chr1:31365771-31365476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 184
               

               
Conread position:
               
150-405
               

               
Cow position:
               
chr1:72981587-72981843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
150-405
               

               
Cow position:
               
chr1:85780460-85780204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 41
               

               
Conread position:
               
150-442
               

               
Cow position:
               
chr1:102434719-102434426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 19
               

               
Conread position:
               
150-444
               

               
Cow position:
               
chr1:40684378-40684087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 76
               

               
Conread position:
               
150-444
               

               
Cow position:
               
chr1:86547822-86547529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 108
               

               
Conread position:
               
150-444
               

               
Cow position:
               
chr1:99913737-99914033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:30534704-30534407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:42736772-42737069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 30
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:57366812-57366509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:62244327-62244029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:65386648-65386943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 22
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:69403300-69403597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 23
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:73070736-73070438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:76545218-76544925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 22
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:76752333-76752035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:79456652-79456356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 22
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:85882322-85882609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:88131091-88131387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
150-445
               

               
Cow position:
               
chr1:94660002-94660289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 29
               

               
Conread position:
               
150-449
               

               
Cow position:
               
chr1:8554641-8554946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 79
               

               
Conread position:
               
150-449
               

               
Cow position:
               
chr1:17012426-17012124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
150-450
               

               
Cow position:
               
chr1:91892803-91892500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
151-272
               

               
Cow position:
               
chr1:78290179-78290305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
151-436
               

               
Cow position:
               
chr1:48246165-48246439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 21
               

               
Conread position:
               
151-445
               

               
Cow position:
               
chr1:82923859-82923563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 190
               

               
Conread position:
               
151-445
               

               
Cow position:
               
chr1:86698897-86698601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 36
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr1:18027449-18027144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 18
               

               
Conread position:
               
152-269
               

               
Cow position:
               
chr1:18405876-18405758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
152-271
               

               
Cow position:
               
chr1:87207107-87206987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:69537218-69537350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
152-444
               

               
Cow position:
               
chr1:82912829-82912533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
152-449
               

               
Cow position:
               
chr1:29034616-29034909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 47
               

               
Conread position:
               
154-436
               

               
Cow position:
               
chr1:93854845-93855126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 26
               

               
Conread position:
               
154-446
               

               
Cow position:
               
chr1:31403178-31402879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 241
               

               
Conread position:
               
162-441
               

               
Cow position:
               
chr1:34692557-34692832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
193, 20
               

               
Conread position:
               
163-284
               

               
Cow position:
               
chr1:28723207-28723328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-371
               

               
Cow position:
               
chr1:30283217-30283008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
194, 178
               

               
Conread position:
               
163-446
               

               
Cow position:
               
chr1:56723480-56723770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 186
               

               
Conread position:
               
163-449
               

               
Cow position:
               
chr1:20829215-20829504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
164-399
               

               
Cow position:
               
chr1:91899322-91899560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
164-436
               

               
Cow position:
               
chr1:28711242-28711518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
164-444
               

               
Cow position:
               
chr1:40574539-40574823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
164-444
               

               
Cow position:
               
chr1:57424513-57424230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
164-444
               

               
Cow position:
               
chr1:82652979-82653275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
164-444
               

               
Cow position:
               
chr1:85792012-85792291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 116
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:5355452-5355741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 163
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:9382222-9381929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:29362622-29362912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 205
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:31397016-31397307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:33851603-33851900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:39544095-39544384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 231
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:53198875-53199165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:69250615-69250904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
164-449
               

               
Cow position:
               
chr1:69766788-69767077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
166-446
               

               
Cow position:
               
chr1:43571073-43570793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
190, 93
               

               
Conread position:
               
169-436
               

               
Cow position:
               
chr1:77511598-77511323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 54
               

               
Conread position:
               
169-445
               

               
Cow position:
               
chr1:68607209-68606927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
170-444
               

               
Cow position:
               
chr1:17036224-17035949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 89
               

               
Conread position:
               
170-444
               

               
Cow position:
               
chr1:80358848-80358571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
170-444
               

               
Cow position:
               
chr1:89425906-89426183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
170-446
               

               
Cow position:
               
chr1:67834808-67834529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 157
               

               
Conread position:
               
170-449
               

               
Cow position:
               
chr1:18880060-18879779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 197
               

               
Conread position:
               
170-449
               

               
Cow position:
               
chr1:56490183-56490466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
170-449
               

               
Cow position:
               
chr1:71562240-71561958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
170-449
               

               
Cow position:
               
chr1:82564836-82565118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
170-449
               

               
Cow position:
               
chr1:95239702-95239983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 227
               

               
Conread position:
               
173-444
               

               
Cow position:
               
chr1:60339641-60339912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 108
               

               
Conread position:
               
174-449
               

               
Cow position:
               
chr1:13450543-13450819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 126
               

               
Conread position:
               
174-449
               

               
Cow position:
               
chr1:66999363-66999630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 159
               

               
Conread position:
               
175-446
               

               
Cow position:
               
chr1:82366523-82366796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 48
               

               
Conread position:
               
186-449
               

               
Cow position:
               
chr1:59209802-59209536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
196-445
               

               
Cow position:
               
chr1:26518522-26518272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 134
               

               
Conread position:
               
199-449
               

               
Cow position:
               
chr1:56163912-56164164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 47
               

               
Conread position:
               
201-446
               

               
Cow position:
               
chr1:52325769-52325535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
161, 80
               

               
Conread position:
               
204-453
               

               
Cow position:
               
chr1:24651649-24651904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
208-311
               

               
Cow position:
               
chr1:76622530-76622427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
208-445
               

               
Cow position:
               
chr1:5502342-5502582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
208-445
               

               
Cow position:
               
chr1:9559912-9560154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 140
               

               
Conread position:
               
209-445
               

               
Cow position:
               
chr1:57657182-57657409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
209-449
               

               
Cow position:
               
chr1:91751091-91750848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
216-402
               

               
Cow position:
               
chr1:68429720-68429908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
103, 65
               

               
Conread position:
               
216-445
               

               
Cow position:
               
chr1:25550344-25550575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 172
               

               
Conread position:
               
216-453
               

               
Cow position:
               
chr1:18242954-18242714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
144, 175
               

               
Conread position:
               
228-450
               

               
Cow position:
               
chr1:11860844-11860623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 131
               

               
Conread position:
               
230-449
               

               
Cow position:
               
chr1:84150593-84150818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 136
               

               
Conread position:
               
231-450
               

               
Cow position:
               
chr1:40308669-40308891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
235-424
               

               
Cow position:
               
chr1:89481189-89481378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
119, 98
               

               
Conread position:
               
239-443
               

               
Cow position:
               
chr1:21936638-21936435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
254-445
               

               
Cow position:
               
chr1:55777002-55777195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
268-444
               

               
Cow position:
               
chr1:57973234-57973055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
268-446
               

               
Cow position:
               
chr1:58178554-58178375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr1:44044225-44044397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
281-436
               

               
Cow position:
               
chr1:6194683-6194841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
287-449
               

               
Cow position:
               
chr1:9258946-9259111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
295-428
               

               
Cow position:
               
chr1:1460726-1460591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
296-445
               

               
Cow position:
               
chr1:57568395-57568547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
311-449
               

               
Cow position:
               
chr1:33896216-33896357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
317-445
               

               
Cow position:
               
chr1:76621203-76621071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
322-445
               

               
Cow position:
               
chr1:24443835-24443711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
323-441
               

               
Cow position:
               
chr1:77117081-77116960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               
Show alignments to all cow chromosomes.