Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 11-176
Cow position: chr10:13364309-13364144 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 63

Conread position: 11-176
Cow position: chr10:13365499-13365334 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 63

Conread position: 11-199
Cow position: chr10:33347228-33347415 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 113

Conread position: 11-394
Cow position: chr10:14861462-14861839 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 63

Conread position: 11-450
Cow position: chr10:31524316-31524740 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 63

Conread position: 12-407
Cow position: chr10:31537860-31538262 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 9

Conread position: 14-116
Cow position: chr10:8339506-8339606 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 14-155
Cow position: chr10:42629161-42629303 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 14-263
Cow position: chr10:46191924-46192155 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 14-392
Cow position: chr10:28931182-28930805 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 92

Conread position: 14-428
Cow position: chr10:3543014-3542608 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 121

Conread position: 14-436
Cow position: chr10:38545689-38545284 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 115

Conread position: 21-439
Cow position: chr10:21900563-21900152 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 78

Conread position: 22-425
Cow position: chr10:54965890-54965512 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 282
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 182, 36

Conread position: 22-427
Cow position: chr10:16476454-16476856 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 279
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 35, 48

Conread position: 22-444
Cow position: chr10:28115874-28115469 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 295
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 31, 108

Conread position: 23-346
Cow position: chr10:15860682-15860385 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 23-363
Cow position: chr10:38847935-38848268 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 39

Conread position: 23-402
Cow position: chr10:32064793-32065186 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 23-427
Cow position: chr10:38403962-38403574 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 282
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 184, 106

Conread position: 24-450
Cow position: chr10:26596826-26597257 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 71

Conread position: 25-443
Cow position: chr10:1368184-1368589 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 279
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 161, 43

Conread position: 28-443
Cow position: chr10:11820999-11821404 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 56

Conread position: 28-444
Cow position: chr10:64302530-64302129 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 61

Conread position: 32-450
Cow position: chr10:41388889-41388467 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 286
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 5, 142

Conread position: 34-292
Cow position: chr10:20370987-20370750 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 0

Conread position: 40-436
Cow position: chr10:21077129-21077522 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 87, 10

Conread position: 55-446
Cow position: chr10:8327034-8326658 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 9

Conread position: 62-428
Cow position: chr10:39041048-39040682 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 91

Conread position: 62-446
Cow position: chr10:24977512-24977125 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 64-413
Cow position: chr10:44294641-44294315 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 65

Conread position: 68-444
Cow position: chr10:41567353-41567735 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 77

Conread position: 68-445
Cow position: chr10:25565008-25564627 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 78

Conread position: 68-449
Cow position: chr10:280371-279970 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 67

Conread position: 69-284
Cow position: chr10:42749032-42749245 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 99, 0

Conread position: 80-284
Cow position: chr10:42110609-42110808 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 88-381
Cow position: chr10:42394398-42394694 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 155, 17

Conread position: 97-445
Cow position: chr10:22101526-22101872 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 84

Conread position: 110-458
Cow position: chr10:17432952-17432610 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 33

Conread position: 114-442
Cow position: chr10:10159383-10159055 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 222
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 13

Conread position: 118-454
Cow position: chr10:60314027-60314380 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 223
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 124-290
Cow position: chr10:8339714-8339879 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 75, 24

Conread position: 129-446
Cow position: chr10:66900036-66899726 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 87, 15

Conread position: 135-283
Cow position: chr10:34686224-34686375 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 139-443
Cow position: chr10:62408520-62408212 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 42

Conread position: 139-456
Cow position: chr10:10582134-10582451 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 43

Conread position: 144-445
Cow position: chr10:19511944-19512247 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 5

Conread position: 145-454
Cow position: chr10:61880354-61880040 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 210
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 65

Conread position: 146-283
Cow position: chr10:62216945-62217083 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 129

Conread position: 146-283
Cow position: chr10:62778686-62778824 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 131

Conread position: 146-284
Cow position: chr10:124648-124787 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 146-445
Cow position: chr10:7281756-7281454 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 147-271
Cow position: chr10:68598956-68598833 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 147-445
Cow position: chr10:14335509-14335215 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 65

Conread position: 147-445
Cow position: chr10:38345020-38344723 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 32

Conread position: 147-445
Cow position: chr10:38538163-38537863 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 33

Conread position: 149-392
Cow position: chr10:54978910-54978675 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 150-284
Cow position: chr10:25359743-25359876 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 114
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 29, 0

Conread position: 150-284
Cow position: chr10:32651077-32651209 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 0

Conread position: 150-436
Cow position: chr10:8290322-8290608 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr10:16925876-16926171 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 18

Conread position: 150-445
Cow position: chr10:21487259-21487556 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 151-444
Cow position: chr10:39880033-39879724 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 38, 208

Conread position: 152-445
Cow position: chr10:30685168-30684874 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 27

Conread position: 152-445
Cow position: chr10:57989648-57989353 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 27

Conread position: 153-445
Cow position: chr10:29846305-29846010 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 26

Conread position: 155-283
Cow position: chr10:29696560-29696684 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 161-444
Cow position: chr10:2120658-2120374 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 18

Conread position: 163-282
Cow position: chr10:19758697-19758816 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 163-282
Cow position: chr10:19802902-19803021 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 163-316
Cow position: chr10:42751328-42751484 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 101

Conread position: 163-449
Cow position: chr10:39180132-39180423 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 77

Conread position: 164-433
Cow position: chr10:32578637-32578908 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 69

Conread position: 164-444
Cow position: chr10:5849277-5848993 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position: chr10:14804185-14804467 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 84

Conread position: 164-445
Cow position: chr10:55093614-55093900 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-446
Cow position: chr10:41877267-41877555 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 65

Conread position: 164-449
Cow position: chr10:21400322-21400033 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr10:21740403-21740114 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 157

Conread position: 164-449
Cow position: chr10:28641888-28642171 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 222

Conread position: 164-449
Cow position: chr10:41157796-41158085 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr10:51952273-51951984 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr10:56065022-56065311 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 170-444
Cow position: chr10:19495930-19495646 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 173-449
Cow position: chr10:11698602-11698881 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 186-446
Cow position: chr10:4191866-4191603 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 188-445
Cow position: chr10:19715187-19714931 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 20

Conread position: 198-450
Cow position: chr10:37770756-37771011 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 199-449
Cow position: chr10:47907315-47907568 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 202-446
Cow position: chr10:14929274-14929516 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 92

Conread position: 203-412
Cow position: chr10:39816097-39815887 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 154, 70

Conread position: 206-436
Cow position: chr10:39779632-39779864 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 75

Conread position: 207-450
Cow position: chr10:40151847-40151607 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 18

Conread position: 211-421
Cow position: chr10:60193074-60193285 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 149, 0

Conread position: 213-441
Cow position: chr10:41632039-41632259 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 214, 124

Conread position: 216-436
Cow position: chr10:1377649-1377872 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 0

Conread position: 236-444
Cow position: chr10:24311924-24311713 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 238-444
Cow position: chr10:29102152-29101945 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 64, 22

Conread position: 266-446
Cow position: chr10:50135015-50135196 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 71

Conread position: 279-449
Cow position: chr10:11685180-11685007 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 78, 0

Conread position: 283-444
Cow position: chr10:57482571-57482415 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 146, 54

Conread position: 294-445
Cow position: chr10:124872-125026 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 126
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 64, 0

Conread position: 302-450
Cow position: chr10:5675-5826 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 0

Conread position: 302-450
Cow position: chr10:8340367-8340516 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 22

Conread position: 320-441
Cow position: chr10:46196013-46196135 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 116

Show alignments to all cow chromosomes.