Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 15-275
Cow position: chr12:1138252-1138499 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 80, 0

Conread position: 22-315
Cow position: chr12:369769-370055 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 203
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 55, 48

Conread position: 22-446
Cow position: chr12:1869428-1869854 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 124

Conread position: 23-396
Cow position: chr12:21500608-21500968 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 246
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 54, 32

Conread position: 24-371
Cow position: chr12:348551-348908 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 242
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 201, 108

Conread position: 40-154
Cow position: chr12:15950477-15950363 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 5

Conread position: 55-285
Cow position: chr12:21941926-21942165 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 23, 0

Conread position: 59-446
Cow position: chr12:3631685-3631303 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 101

Conread position: 111-449
Cow position: chr12:10485286-10485621 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 236
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 154, 22

Conread position: 122-449
Cow position: chr12:8197449-8197779 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 0

Conread position: 128-443
Cow position: chr12:2282799-2283122 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 270

Conread position: 135-283
Cow position: chr12:44005142-44004997 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 113

Conread position: 136-279
Cow position: chr12:251806-251665 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 136-445
Cow position: chr12:28765767-28765457 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 6

Conread position: 146-436
Cow position: chr12:14662370-14662075 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 146-445
Cow position: chr12:42859564-42859263 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 24

Conread position: 146-449
Cow position: chr12:21198223-21198526 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 89

Conread position: 147-445
Cow position: chr12:25100797-25100496 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 150-438
Cow position: chr12:27932676-27932382 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 112, 29

Conread position: 150-445
Cow position: chr12:1402759-1403053 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr12:22205479-22205182 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 151-444
Cow position: chr12:27855690-27855402 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 29

Conread position: 151-445
Cow position: chr12:11098512-11098807 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 28

Conread position: 152-283
Cow position: chr12:21902209-21902341 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 160-454
Cow position: chr12:37357803-37358088 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 92

Conread position: 163-299
Cow position: chr12:21208680-21208815 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 163-439
Cow position: chr12:16821749-16822028 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 163-445
Cow position: chr12:21426968-21427251 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 163-446
Cow position: chr12:32653818-32654103 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 123

Conread position: 164-427
Cow position: chr12:33986436-33986702 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-442
Cow position: chr12:21254382-21254108 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 134

Conread position: 164-444
Cow position: chr12:6406369-6406086 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 164-444
Cow position: chr12:37558830-37559108 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 53

Conread position: 164-449
Cow position: chr12:4157651-4157940 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr12:43031111-43030824 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 83

Conread position: 208-428
Cow position: chr12:8677763-8677551 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 108, 0

Conread position: 209-436
Cow position: chr12:21371002-21371224 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 148, 108

Conread position: 228-407
Cow position: chr12:6493073-6492895 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 110

Conread position: 238-443
Cow position: chr12:601004-600796 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 250-355
Cow position: chr12:36482802-36482907 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 250-446
Cow position: chr12:36427600-36427799 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 250-446
Cow position: chr12:36448942-36449142 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 250-446
Cow position: chr12:36479538-36479737 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 250-450
Cow position: chr12:36367197-36367400 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 311-449
Cow position: chr12:21942161-21942302 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 319-446
Cow position: chr12:35314221-35314091 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 329-443
Cow position: chr12:25263027-25262910 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 0

Show alignments to all cow chromosomes.