Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 11-211 |
| Cow position: | chr13:15451318-15451132 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-436 |
| Cow position: | chr13:26844022-26844422 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 62 |
| Conread position: | 11-443 |
| Cow position: | chr13:20542135-20541693 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 11-451 |
| Cow position: | chr13:34937403-34937831 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 43 |
| Conread position: | 14-344 |
| Cow position: | chr13:48357484-48357804 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 60 |
| Conread position: | 14-446 |
| Cow position: | chr13:46731805-46731387 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 56 |
| Conread position: | 15-224 |
| Cow position: | chr13:34186590-34186394 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 15-450 |
| Cow position: | chr13:43983167-43982734 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 127 |
| Conread position: | 21-291 |
| Cow position: | chr13:34766944-34766685 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 45 |
| Conread position: | 22-309 |
| Cow position: | chr13:11763897-11763608 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 22-419 |
| Cow position: | chr13:29202442-29202040 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 6 |
| Conread position: | 22-428 |
| Cow position: | chr13:28672295-28671886 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 22-446 |
| Cow position: | chr13:19413154-19413555 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 23-444 |
| Cow position: | chr13:60700927-60700519 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 123, 128 |
| Conread position: | 27-435 |
| Cow position: | chr13:27922299-27921900 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 254, 35 |
| Conread position: | 28-446 |
| Cow position: | chr13:31556789-31556378 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 32-398 |
| Cow position: | chr13:2582731-2582361 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 32-444 |
| Cow position: | chr13:22185295-22184898 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 12 |
| Conread position: | 43-454 |
| Cow position: | chr13:22697570-22697970 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 60-387 |
| Cow position: | chr13:34029030-34029365 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 63-435 |
| Cow position: | chr13:21131900-21132275 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 67-432 |
| Cow position: | chr13:35030505-35030870 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 86-425 |
| Cow position: | chr13:11064181-11063858 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 97-315 |
| Cow position: | chr13:30262356-30262568 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 195, 24 |
| Conread position: | 117-433 |
| Cow position: | chr13:22831677-22831357 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 139-432 |
| Cow position: | chr13:34042334-34042037 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 139-445 |
| Cow position: | chr13:30303311-30303623 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 148 |
| Conread position: | 139-450 |
| Cow position: | chr13:1593120-1592807 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 40 |
| Conread position: | 146-285 |
| Cow position: | chr13:34693207-34693348 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-395 |
| Cow position: | chr13:22766065-22766318 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 146-445 |
| Cow position: | chr13:6668078-6667775 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-445 |
| Cow position: | chr13:23003265-23002964 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 33 |
| Conread position: | 146-450 |
| Cow position: | chr13:34868784-34869090 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 146-451 |
| Cow position: | chr13:30238288-30238595 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 191 |
| Conread position: | 147-443 |
| Cow position: | chr13:43855686-43855992 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 150-443 |
| Cow position: | chr13:4483842-4484137 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 150-445 |
| Cow position: | chr13:32737777-32737484 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 37 |
| Conread position: | 150-445 |
| Cow position: | chr13:32985306-32985008 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 150-445 |
| Cow position: | chr13:33336371-33336083 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 29 |
| Conread position: | 150-446 |
| Cow position: | chr13:35757290-35757587 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-450 |
| Cow position: | chr13:4941136-4941431 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-450 |
| Cow position: | chr13:34325517-34325212 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 151-444 |
| Cow position: | chr13:15924335-15924040 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 28 |
| Conread position: | 151-445 |
| Cow position: | chr13:9044549-9044845 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 28 |
| Conread position: | 152-271 |
| Cow position: | chr13:34142614-34142494 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-283 |
| Cow position: | chr13:2908384-2908252 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-283 |
| Cow position: | chr13:3277204-3277335 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 152-445 |
| Cow position: | chr13:3654274-3653977 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 161-449 |
| Cow position: | chr13:49973735-49974026 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 163-449 |
| Cow position: | chr13:31734032-31733743 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 163-450 |
| Cow position: | chr13:30656916-30656632 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 20 |
| Conread position: | 164-444 |
| Cow position: | chr13:2388765-2388474 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-444 |
| Cow position: | chr13:30244625-30244341 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-444 |
| Cow position: | chr13:47229948-47229664 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 164-449 |
| Cow position: | chr13:3058057-3057768 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 165 |
| Conread position: | 164-449 |
| Cow position: | chr13:17308528-17308812 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 99 |
| Conread position: | 164-449 |
| Cow position: | chr13:21840141-21839856 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 20 |
| Conread position: | 164-449 |
| Cow position: | chr13:60466390-60466676 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 165-383 |
| Cow position: | chr13:2296758-2296542 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 195, 73 |
| Conread position: | 168-444 |
| Cow position: | chr13:50109519-50109797 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 118 |
| Conread position: | 170-444 |
| Cow position: | chr13:13324809-13325086 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 203-434 |
| Cow position: | chr13:57023802-57024036 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 203-449 |
| Cow position: | chr13:41315952-41316201 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 204-445 |
| Cow position: | chr13:15520399-15520167 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 24 |
| Conread position: | 206-447 |
| Cow position: | chr13:34911061-34910819 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 208-436 |
| Cow position: | chr13:15451006-15450778 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 17 |
| Conread position: | 209-449 |
| Cow position: | chr13:58118808-58118566 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 20 |
| Conread position: | 210-428 |
| Cow position: | chr13:57573821-57573601 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 211-445 |
| Cow position: | chr13:31612201-31611963 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 211-445 |
| Cow position: | chr13:32545484-32545721 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 217-449 |
| Cow position: | chr13:676970-677217 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 228-450 |
| Cow position: | chr13:34206770-34206554 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 29 |
| Conread position: | 249-445 |
| Cow position: | chr13:13900011-13900209 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 142 |
| Conread position: | 280-446 |
| Cow position: | chr13:5625903-5625738 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 139, 73 |
| Conread position: | 303-445 |
| Cow position: | chr13:11799526-11799381 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 303-445 |
| Cow position: | chr13:18331607-18331752 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 333-449 |
| Cow position: | chr13:12063726-12063607 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.