Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 2-425
Cow position:
Alignm length: 429
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 99

Conread position: 8-449
Cow position:
Alignm length: 467
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 166

Conread position: 11-144
Cow position:
Alignm length: 134
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 11-170
Cow position:
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 11-185
Cow position:
Alignm length: 176
Alignm identity: 130
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 162, 84

Conread position: 11-196
Cow position:
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 114

Conread position: 11-450
Cow position:
Alignm length: 442
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 59

Conread position: 14-399
Cow position:
Alignm length: 394
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 147

Conread position: 14-442
Cow position:
Alignm length: 440
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 129

Conread position: 15-443
Cow position:
Alignm length: 438
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 15

Conread position: 15-449
Cow position:
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 119

Conread position: 19-211
Cow position:
Alignm length: 193
Alignm identity: 146
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 99, 0

Conread position: 21-444
Cow position:
Alignm length: 436
Alignm identity: 278
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 259, 7

Conread position: 22-224
Cow position:
Alignm length: 211
Alignm identity: 153
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 76, 37

Conread position: 22-398
Cow position:
Alignm length: 380
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 52

Conread position: 22-412
Cow position:
Alignm length: 396
Alignm identity: 273
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 322, 46

Conread position: 22-427
Cow position:
Alignm length: 410
Alignm identity: 276
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 21

Conread position: 22-436
Cow position:
Alignm length: 429
Alignm identity: 282
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 18, 63

Conread position: 22-450
Cow position:
Alignm length: 438
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 63

Conread position: 23-397
Cow position:
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 80

Conread position: 23-407
Cow position:
Alignm length: 391
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 76

Conread position: 23-434
Cow position:
Alignm length: 422
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 76

Conread position: 23-438
Cow position:
Alignm length: 438
Alignm identity: 298
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 253, 95

Conread position: 23-443
Cow position:
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 51

Conread position: 23-449
Cow position:
Alignm length: 449
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 202

Conread position: 24-449
Cow position:
Alignm length: 432
Alignm identity: 264
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 79

Conread position: 25-446
Cow position:
Alignm length: 425
Alignm identity: 290
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 332, 30

Conread position: 26-213
Cow position:
Alignm length: 194
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 50, 77

Conread position: 26-449
Cow position:
Alignm length: 430
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 29

Conread position: 27-448
Cow position:
Alignm length: 426
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 47

Conread position: 28-444
Cow position:
Alignm length: 436
Alignm identity: 280
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 220, 39

Conread position: 28-446
Cow position:
Alignm length: 424
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 103

Conread position: 32-446
Cow position:
Alignm length: 434
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 117

Conread position: 40-444
Cow position:
Alignm length: 408
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 15

Conread position: 44-443
Cow position:
Alignm length: 405
Alignm identity: 268
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 11

Conread position: 52-346
Cow position:
Alignm length: 297
Alignm identity: 192
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 16

Conread position: 114-400
Cow position:
Alignm length: 295
Alignm identity: 188
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 13

Conread position: 119-449
Cow position:
Alignm length: 334
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 47

Conread position: 126-423
Cow position:
Alignm length: 315
Alignm identity: 223
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 36, 156

Conread position: 135-283
Cow position:
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 46

Conread position: 135-417
Cow position:
Alignm length: 285
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 24

Conread position: 135-445
Cow position:
Alignm length: 314
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 24

Conread position: 136-446
Cow position:
Alignm length: 316
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 136

Conread position: 137-450
Cow position:
Alignm length: 318
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 151

Conread position: 139-261
Cow position:
Alignm length: 124
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 139-429
Cow position:
Alignm length: 293
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 36

Conread position: 139-445
Cow position:
Alignm length: 312
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 42

Conread position: 139-450
Cow position:
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 146-279
Cow position:
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 93

Conread position: 146-283
Cow position:
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 146-284
Cow position:
Alignm length: 140
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 146-445
Cow position:
Alignm length: 307
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 139

Conread position: 146-445
Cow position:
Alignm length: 305
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 146-445
Cow position:
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 107

Conread position: 146-445
Cow position:
Alignm length: 305
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 146-446
Cow position:
Alignm length: 305
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 110

Conread position: 146-446
Cow position:
Alignm length: 305
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 146-450
Cow position:
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 85

Conread position: 147-450
Cow position:
Alignm length: 311
Alignm identity: 205
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 40

Conread position: 147-450
Cow position:
Alignm length: 310
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 223

Conread position: 149-405
Cow position:
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 48

Conread position: 149-434
Cow position:
Alignm length: 292
Alignm identity: 195
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 59, 141

Conread position: 149-443
Cow position:
Alignm length: 299
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 30

Conread position: 150-287
Cow position:
Alignm length: 138
Alignm identity: 117
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 0

Conread position: 150-346
Cow position:
Alignm length: 197
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 150-368
Cow position:
Alignm length: 219
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 150-436
Cow position:
Alignm length: 288
Alignm identity: 207
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 280, 29

Conread position: 150-441
Cow position:
Alignm length: 297
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 298
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 37

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 19

Conread position: 150-445
Cow position:
Alignm length: 298
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 29

Conread position: 150-445
Cow position:
Alignm length: 301
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 29

Conread position: 151-445
Cow position:
Alignm length: 298
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 29

Conread position: 151-445
Cow position:
Alignm length: 298
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 21

Conread position: 152-271
Cow position:
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 152-315
Cow position:
Alignm length: 164
Alignm identity: 131
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 153-445
Cow position:
Alignm length: 296
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 163-325
Cow position:
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 163-436
Cow position:
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 256

Conread position: 163-449
Cow position:
Alignm length: 290
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 168

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 144

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 291
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 291
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 132

Conread position: 164-450
Cow position:
Alignm length: 290
Alignm identity: 193
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 193, 29

Conread position: 166-445
Cow position:
Alignm length: 283
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 170-427
Cow position:
Alignm length: 260
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-444
Cow position:
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 73

Conread position: 170-449
Cow position:
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 116

Conread position: 170-449
Cow position:
Alignm length: 286
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 84

Conread position: 177-446
Cow position:
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 95

Conread position: 184-449
Cow position:
Alignm length: 273
Alignm identity: 177
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 95, 23

Conread position: 185-449
Cow position:
Alignm length: 269
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 44, 15

Conread position: 190-450
Cow position:
Alignm length: 265
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 169, 68

Conread position: 192-444
Cow position:
Alignm length: 257
Alignm identity: 180
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 40, 49

Conread position: 195-446
Cow position:
Alignm length: 255
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 198-449
Cow position:
Alignm length: 257
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 60

Conread position: 202-427
Cow position:
Alignm length: 229
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 203-436
Cow position:
Alignm length: 237
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 206-446
Cow position:
Alignm length: 244
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 51

Conread position: 206-450
Cow position:
Alignm length: 246
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 159

Conread position: 207-402
Cow position:
Alignm length: 202
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 207-436
Cow position:
Alignm length: 233
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 208-423
Cow position:
Alignm length: 217
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 209-447
Cow position:
Alignm length: 250
Alignm identity: 176
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 52

Conread position: 217-445
Cow position:
Alignm length: 239
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 260-430
Cow position:
Alignm length: 173
Alignm identity: 139
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 95, 0

Conread position: 275-445
Cow position:
Alignm length: 174
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 83, 12

Conread position: 286-445
Cow position:
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 72, 45

Conread position: 286-448
Cow position:
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 51

Conread position: 298-449
Cow position:
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 129, 0

Conread position: 317-445
Cow position:
Alignm length: 132
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 319-446
Cow position:
Alignm length: 131
Alignm identity: 105
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 331-449
Cow position:
Alignm length: 122
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 333-449
Cow position:
Alignm length: 120
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 333-449
Cow position:
Alignm length: 120
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 0

Show alignments to all cow chromosomes.