Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 1-428
Cow position: chr16:29033477-29033898 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 87

Conread position: 11-188
Cow position: chr16:18499266-18499094 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 124, 0

Conread position: 11-241
Cow position: chr16:49256681-49256456 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 25, 143

Conread position: 11-441
Cow position: chr16:16272158-16271733 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 59

Conread position: 11-446
Cow position: chr16:49235374-49234955 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 33

Conread position: 14-202
Cow position: chr16:336162-336359 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 24

Conread position: 14-399
Cow position: chr16:5889970-5890339 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 111

Conread position: 15-445
Cow position: chr16:23807876-23808295 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 59

Conread position: 15-446
Cow position: chr16:42739648-42739231 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 51

Conread position: 15-457
Cow position: chr16:25156433-25155992 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 51

Conread position: 17-443
Cow position: chr16:48915699-48915283 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 289
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 91, 23

Conread position: 19-444
Cow position: chr16:28437949-28437512 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 290
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 108, 9

Conread position: 19-450
Cow position: chr16:25257386-25257815 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 106

Conread position: 21-407
Cow position: chr16:54177922-54177556 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 263
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 120, 44

Conread position: 22-445
Cow position: chr16:47563843-47564276 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 302
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 75, 201

Conread position: 22-449
Cow position: chr16:47473044-47473450 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 48

Conread position: 23-412
Cow position: chr16:18764153-18763785 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 21

Conread position: 26-276
Cow position: chr16:37457129-37456876 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 0

Conread position: 28-293
Cow position: chr16:41756854-41756599 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 61

Conread position: 28-439
Cow position: chr16:25170792-25171220 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 98

Conread position: 28-451
Cow position: chr16:26516962-26516536 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 55

Conread position: 78-443
Cow position: chr16:44410387-44410759 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 42

Conread position: 98-444
Cow position: chr16:42186134-42185787 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 224
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 11, 143

Conread position: 114-450
Cow position: chr16:28867611-28867273 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 227
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 75

Conread position: 119-357
Cow position: chr16:18687586-18687345 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 119-429
Cow position: chr16:25085187-25085485 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 32

Conread position: 135-445
Cow position: chr16:3070117-3069804 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 205
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 71, 13

Conread position: 135-445
Cow position: chr16:31592343-31592039 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 9

Conread position: 135-449
Cow position: chr16:2239179-2238868 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 161

Conread position: 136-445
Cow position: chr16:5483884-5484194 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 6

Conread position: 136-445
Cow position: chr16:8816543-8816231 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 6

Conread position: 136-445
Cow position: chr16:10203869-10203565 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 6

Conread position: 136-445
Cow position: chr16:15566303-15566616 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 6

Conread position: 139-445
Cow position: chr16:1567889-1567579 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 141-436
Cow position: chr16:15184372-15184661 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 38

Conread position: 146-283
Cow position: chr16:14430165-14430304 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 146-283
Cow position: chr16:20254739-20254600 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 146-443
Cow position: chr16:2727716-2727415 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 146-445
Cow position: chr16:407459-407157 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 146-445
Cow position: chr16:2483570-2483266 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 95

Conread position: 146-450
Cow position: chr16:28471530-28471223 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 106

Conread position: 147-445
Cow position: chr16:2411393-2411093 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 32

Conread position: 148-271
Cow position: chr16:19713311-19713189 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 148-446
Cow position: chr16:34529896-34530197 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 0

Conread position: 150-436
Cow position: chr16:27734214-27733921 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 138, 29

Conread position: 150-443
Cow position: chr16:43897693-43897399 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr16:10437819-10438110 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr16:12538347-12538051 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 19

Conread position: 150-445
Cow position: chr16:23252929-23252632 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 150-445
Cow position: chr16:23982888-23983183 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 30

Conread position: 150-445
Cow position: chr16:25341544-25341832 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 29

Conread position: 150-445
Cow position: chr16:25441202-25441501 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 29

Conread position: 150-445
Cow position: chr16:25457887-25457590 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr16:29046600-29046896 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr16:40296600-40296303 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 151-432
Cow position: chr16:836607-836908 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 151-443
Cow position: chr16:26663328-26663624 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 152-292
Cow position: chr16:50506767-50506908 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 114, 0

Conread position: 152-299
Cow position: chr16:1431736-1431883 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 153-445
Cow position: chr16:9930515-9930808 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 20

Conread position: 154-423
Cow position: chr16:36159313-36159585 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 58

Conread position: 161-444
Cow position: chr16:25188222-25188501 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 23

Conread position: 164-304
Cow position: chr16:29675785-29675648 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 164-449
Cow position: chr16:32321-32611 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr16:5661433-5661721 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 123

Conread position: 164-449
Cow position: chr16:28170781-28170494 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 84

Conread position: 164-449
Cow position: chr16:31832215-31832504 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 165

Conread position: 164-449
Cow position: chr16:53045937-53046226 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 170-444
Cow position: chr16:10375988-10375726 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 175

Conread position: 170-444
Cow position: chr16:41163469-41163192 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-449
Cow position: chr16:4302741-4302462 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 92

Conread position: 190-446
Cow position: chr16:18498701-18498445 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 194-449
Cow position: chr16:24105325-24105581 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 66

Conread position: 202-446
Cow position: chr16:25892347-25892591 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 63

Conread position: 208-443
Cow position: chr16:14666178-14665940 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 220-445
Cow position: chr16:15492875-15493104 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 223-418
Cow position: chr16:36232090-36231897 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 130, 0

Conread position: 236-449
Cow position: chr16:26650898-26651115 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 113, 0

Conread position: 239-449
Cow position: chr16:6943267-6943481 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 0

Conread position: 248-444
Cow position: chr16:28198004-28197805 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 109, 14

Conread position: 249-450
Cow position: chr16:4479308-4479104 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 262-445
Cow position: chr16:15476531-15476717 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 276-450
Cow position: chr16:15237447-15237621 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 95, 54

Conread position: 288-443
Cow position: chr16:30049211-30049364 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 23

Conread position: 294-443
Cow position: chr16:1431906-1432062 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 308-436
Cow position: chr16:41755978-41755847 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 310-450
Cow position: chr16:49256458-49256319 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 29

Conread position: 311-450
Cow position: chr16:37456288-37456147 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 328-446
Cow position: chr16:43852364-43852244 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 31, 39

Conread position: 356-449
Cow position: chr16:1859661-1859755 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.