Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 11-165
Cow position: chr17:20402103-20402255 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 14-179
Cow position: chr17:22558020-22558183 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 123

Conread position: 14-204
Cow position: chr17:18193619-18193800 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 168, 54

Conread position: 14-449
Cow position: chr17:4082076-4082504 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 83

Conread position: 15-444
Cow position: chr17:3708761-3708333 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 61

Conread position: 15-445
Cow position: chr17:19019596-19020020 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 55

Conread position: 15-446
Cow position: chr17:12670053-12669630 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 62

Conread position: 15-449
Cow position: chr17:18300377-18299944 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 59

Conread position: 21-195
Cow position: chr17:152073-151905 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 23

Conread position: 21-446
Cow position: chr17:14308038-14307619 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 53

Conread position: 21-450
Cow position: chr17:20811870-20811438 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 286
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 36, 50

Conread position: 22-366
Cow position: chr17:40834236-40833891 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 219
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 101, 27

Conread position: 22-448
Cow position: chr17:11026782-11026348 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 280
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 105, 48

Conread position: 22-449
Cow position: chr17:42264948-42265376 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 29

Conread position: 23-398
Cow position: chr17:20488028-20488398 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 265

Conread position: 23-446
Cow position: chr17:1657807-1657396 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 10

Conread position: 28-433
Cow position: chr17:15384301-15384721 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 34-395
Cow position: chr17:31104142-31103761 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 250
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 119, 136

Conread position: 61-449
Cow position: chr17:15156903-15156516 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 31

Conread position: 122-446
Cow position: chr17:14040904-14040583 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 104

Conread position: 124-444
Cow position: chr17:2174015-2174324 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 7

Conread position: 132-436
Cow position: chr17:2092635-2092319 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 204
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 70

Conread position: 135-283
Cow position: chr17:35592356-35592505 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 25

Conread position: 140-436
Cow position: chr17:6068704-6068998 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 145-450
Cow position: chr17:15850549-15850855 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 14

Conread position: 146-283
Cow position: chr17:20073096-20072957 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 109

Conread position: 146-284
Cow position: chr17:18185385-18185245 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 146-299
Cow position: chr17:13856621-13856468 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 126
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 141

Conread position: 146-341
Cow position: chr17:25737815-25738008 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 26, 0

Conread position: 146-436
Cow position: chr17:18103535-18103246 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 146-445
Cow position: chr17:3642686-3642383 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 34

Conread position: 146-445
Cow position: chr17:6259994-6260295 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 42

Conread position: 146-445
Cow position: chr17:11087574-11087274 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 34

Conread position: 146-445
Cow position: chr17:24029850-24029557 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 189

Conread position: 146-445
Cow position: chr17:40804969-40805265 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 33

Conread position: 146-450
Cow position: chr17:22132378-22132687 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 147-445
Cow position: chr17:4060248-4060551 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 149-444
Cow position: chr17:250310-250612 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 149-444
Cow position: chr17:20087593-20087296 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 26

Conread position: 150-343
Cow position: chr17:2248436-2248243 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 150-426
Cow position: chr17:19269210-19268935 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 19

Conread position: 150-445
Cow position: chr17:2579771-2580068 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr17:14894309-14894606 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 23

Conread position: 150-451
Cow position: chr17:21354242-21354545 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 57

Conread position: 151-283
Cow position: chr17:602284-602151 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 152-445
Cow position: chr17:1880248-1880536 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 30

Conread position: 153-283
Cow position: chr17:27345956-27346086 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 12, 116

Conread position: 154-445
Cow position: chr17:16857373-16857073 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 163-342
Cow position: chr17:24634115-24634294 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 163-445
Cow position: chr17:5226784-5227068 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 228

Conread position: 163-446
Cow position: chr17:6119869-6120158 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 0

Conread position: 163-449
Cow position: chr17:228147-227858 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 163-449
Cow position: chr17:34156289-34156578 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 30

Conread position: 164-325
Cow position: chr17:181524-181684 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 91

Conread position: 164-420
Cow position: chr17:43952402-43952143 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position: chr17:2262263-2262548 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position: chr17:15435952-15436236 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr17:1382653-1382369 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 258

Conread position: 164-449
Cow position: chr17:8209267-8209557 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr17:15143206-15142917 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr17:23324293-23324004 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 89

Conread position: 164-449
Cow position: chr17:31767878-31767589 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 170-444
Cow position: chr17:24782335-24782610 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 149

Conread position: 170-449
Cow position: chr17:14216858-14216583 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 161

Conread position: 170-449
Cow position: chr17:20665558-20665275 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 177-439
Cow position: chr17:38945837-38946095 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 121

Conread position: 188-439
Cow position: chr17:2030332-2030591 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 175
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 69, 156

Conread position: 195-445
Cow position: chr17:15324021-15324274 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 202-446
Cow position: chr17:151671-151425 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 33

Conread position: 203-444
Cow position: chr17:13695785-13695546 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 154, 114

Conread position: 206-446
Cow position: chr17:20183643-20183877 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 41

Conread position: 206-449
Cow position: chr17:11376580-11376334 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 209-390
Cow position: chr17:14051903-14051720 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 91, 50

Conread position: 228-436
Cow position: chr17:18194057-18194269 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 296-449
Cow position: chr17:9081146-9080990 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 331-449
Cow position: chr17:43988829-43988950 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.